Strain Fitness in Escherichia fergusonii Becca around EFB2_01027

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,058,253	+		EFB2_01026	0.41	+0.1
1,058,253	+		EFB2_01026	0.41	+1.1
1,058,253	+		EFB2_01026	0.41	+1.2
1,058,253	+		EFB2_01026	0.41	-1.6
1,058,253	+		EFB2_01026	0.41	+1.0
1,058,254	-		EFB2_01026	0.41	-2.0
1,058,254	-		EFB2_01026	0.41	+3.1
1,058,254	-		EFB2_01026	0.41	-2.6
1,058,254	-		EFB2_01026	0.41	+0.9
1,058,254	-		EFB2_01026	0.41	+1.0
1,058,254	-		EFB2_01026	0.41	+0.2
1,058,254	-		EFB2_01026	0.41	-0.5
1,058,270	+		EFB2_01026	0.42	+1.0
1,058,270	+		EFB2_01026	0.42	+1.0
1,058,270	+		EFB2_01026	0.42	+1.7
1,058,271	-		EFB2_01026	0.42	+1.2
1,058,277	+		EFB2_01026	0.42	-1.4
1,058,277	+		EFB2_01026	0.42	+0.6
1,058,277	+		EFB2_01026	0.42	+0.1
1,058,277	+		EFB2_01026	0.42	-1.0
1,058,277	+		EFB2_01026	0.42	+1.1
1,058,277	+		EFB2_01026	0.42	+0.8
1,058,277	+		EFB2_01026	0.42	-3.4
1,058,277	+		EFB2_01026	0.42	+0.8
1,058,277	+		EFB2_01026	0.42	-1.4
1,058,277	+		EFB2_01026	0.42	+0.6
1,058,277	+		EFB2_01026	0.42	+2.7
1,058,277	+		EFB2_01026	0.42	-2.8
1,058,277	+		EFB2_01026	0.42	+1.3
1,058,277	+		EFB2_01026	0.42	+0.4
1,058,277	+		EFB2_01026	0.42	-0.3
1,058,277	+		EFB2_01026	0.42	-1.4
1,058,277	+		EFB2_01026	0.42	+1.7
1,058,277	+		EFB2_01026	0.42	+0.9
1,058,277	+		EFB2_01026	0.42	+0.9
1,058,277	+		EFB2_01026	0.42	-1.9
1,058,277	+		EFB2_01026	0.42	+0.3
1,058,277	+		EFB2_01026	0.42	+1.3
1,058,277	+		EFB2_01026	0.42	+0.9
1,058,277	+		EFB2_01026	0.42	+0.1
1,058,277	+		EFB2_01026	0.42	+1.2
1,058,277	+		EFB2_01026	0.42	-1.0
1,058,277	+		EFB2_01026	0.42	-3.0
1,058,277	+		EFB2_01026	0.42	+0.5
1,058,277	+		EFB2_01026	0.42	-0.5
1,058,277	+		EFB2_01026	0.42	+1.1
1,058,277	+		EFB2_01026	0.42	-0.2
1,058,277	+		EFB2_01026	0.42	-1.1
1,058,277	+		EFB2_01026	0.42	+0.2
1,058,277	+		EFB2_01026	0.42	-0.3
1,058,277	+		EFB2_01026	0.42	+0.3
1,058,277	+		EFB2_01026	0.42	+0.0
1,058,277	+		EFB2_01026	0.42	+0.6
1,058,277	+		EFB2_01026	0.42	+0.3
1,058,277	+		EFB2_01026	0.42	-1.4
1,058,277	+		EFB2_01026	0.42	-1.9
1,058,277	+		EFB2_01026	0.42	-0.9
1,058,277	+		EFB2_01026	0.42	+1.6
1,058,277	+		EFB2_01026	0.42	+0.6
1,058,277	+		EFB2_01026	0.42	+0.9
1,058,277	+		EFB2_01026	0.42	-0.5
1,058,277	+		EFB2_01026	0.42	+0.8
1,058,277	+		EFB2_01026	0.42	-1.2
1,058,277	+		EFB2_01026	0.42	-1.2
1,058,277	+		EFB2_01026	0.42	-0.3
1,058,277	+		EFB2_01026	0.42	-0.1
1,058,277	+		EFB2_01026	0.42	-1.1
1,058,277	+		EFB2_01026	0.42	-2.2
1,058,277	+		EFB2_01026	0.42	+1.9
1,058,277	+		EFB2_01026	0.42	-2.0
1,058,277	+		EFB2_01026	0.42	+0.5
1,058,278	-		EFB2_01026	0.43	-0.0
1,058,278	-		EFB2_01026	0.43	-0.1
1,058,278	-		EFB2_01026	0.43	+0.7
1,058,278	-		EFB2_01026	0.43	-1.4
1,058,278	-		EFB2_01026	0.43	+0.4
1,058,278	-		EFB2_01026	0.43	+0.5
1,058,278	-		EFB2_01026	0.43	+1.0
1,058,278	-		EFB2_01026	0.43	-1.6
1,058,278	-		EFB2_01026	0.43	-1.6
1,058,278	-		EFB2_01026	0.43	+1.7
1,058,278	-		EFB2_01026	0.43	+1.9
1,058,278	-		EFB2_01026	0.43	+1.1
1,058,278	-		EFB2_01026	0.43	-0.8
1,058,278	-		EFB2_01026	0.43	-0.3
1,058,278	-		EFB2_01026	0.43	+0.9
1,058,278	-		EFB2_01026	0.43	-0.4
1,058,278	-		EFB2_01026	0.43	+1.9
1,058,278	-		EFB2_01026	0.43	+1.0
1,058,278	-		EFB2_01026	0.43	+0.2
1,058,278	-		EFB2_01026	0.43	-0.2
1,058,278	-		EFB2_01026	0.43	-0.8
1,058,278	-		EFB2_01026	0.43	+0.4
1,058,278	-		EFB2_01026	0.43	+0.1
1,058,278	-		EFB2_01026	0.43	-1.8
1,058,278	-		EFB2_01026	0.43	-0.7
1,058,278	-		EFB2_01026	0.43	-1.8
1,058,278	-		EFB2_01026	0.43	+2.0
1,058,278	-		EFB2_01026	0.43	-0.5
1,058,278	-		EFB2_01026	0.43	-0.4
1,058,278	-		EFB2_01026	0.43	+2.2
1,058,278	-		EFB2_01026	0.43	+1.2
1,058,278	-		EFB2_01026	0.43	-2.2
1,058,278	-		EFB2_01026	0.43	-0.2
1,058,278	-		EFB2_01026	0.43	+1.0
1,058,278	-		EFB2_01026	0.43	+0.2
1,058,278	-		EFB2_01026	0.43	+0.5
1,058,278	-		EFB2_01026	0.43	+0.0
1,058,278	-		EFB2_01026	0.43	-0.7
1,058,278	-		EFB2_01026	0.43	+0.2
1,058,278	-		EFB2_01026	0.43	-1.0
1,058,278	-		EFB2_01026	0.43	-0.4
1,058,278	-		EFB2_01026	0.43	-0.8
1,058,278	-		EFB2_01026	0.43	+0.9
1,058,278	-		EFB2_01026	0.43	+0.2
1,058,278	-		EFB2_01026	0.43	-0.8
1,058,278	-		EFB2_01026	0.43	-1.4
1,058,278	-		EFB2_01026	0.43	-1.0
1,058,278	-		EFB2_01026	0.43	+0.7
1,058,278	-		EFB2_01026	0.43	+0.1
1,058,278	-		EFB2_01026	0.43	-0.1
1,058,278	-		EFB2_01026	0.43	+1.3
1,058,278	-		EFB2_01026	0.43	-0.4
1,058,278	-		EFB2_01026	0.43	+0.3
1,058,278	-		EFB2_01026	0.43	-1.9
1,058,325	+		EFB2_01026	0.45	-0.6
1,058,325	+		EFB2_01026	0.45	+0.8
1,058,325	+		EFB2_01026	0.45	+0.5
1,058,326	-		EFB2_01026	0.46	-0.3
1,058,326	-		EFB2_01026	0.46	-0.1
1,058,326	-		EFB2_01026	0.46	+0.8
1,058,326	-		EFB2_01026	0.46	+0.1
1,058,326	-		EFB2_01026	0.46	+0.1
1,058,328	+		EFB2_01026	0.46	+2.9
1,058,328	+		EFB2_01026	0.46	+3.7
1,058,329	-		EFB2_01026	0.46	+0.7
1,058,329	-		EFB2_01026	0.46	+1.3
1,058,329	-		EFB2_01026	0.46	+1.2
1,058,433	+		EFB2_01026	0.52	-0.3
1,058,434	-		EFB2_01026	0.52	-1.3
1,058,434	-		EFB2_01026	0.52	-1.7
1,058,434	-		EFB2_01026	0.52	-1.7
1,058,439	+		EFB2_01026	0.52	-2.5
1,058,439	+		EFB2_01026	0.52	-0.4
1,058,439	+		EFB2_01026	0.52	-2.3
1,058,439	+		EFB2_01026	0.52	-0.1
1,058,440	-		EFB2_01026	0.53	-1.8
1,058,440	-		EFB2_01026	0.53	+1.4
1,058,440	-		EFB2_01026	0.53	+1.0
1,058,440	-		EFB2_01026	0.53	-2.3
1,058,440	-		EFB2_01026	0.53	-0.9
1,058,440	-		EFB2_01026	0.53	-0.5
1,058,447	+		EFB2_01026	0.53	+1.9
1,058,447	+		EFB2_01026	0.53	+1.8
1,058,447	+		EFB2_01026	0.53	-0.2
1,058,447	+		EFB2_01026	0.53	-1.0
1,058,447	+		EFB2_01026	0.53	-0.2
1,058,447	+		EFB2_01026	0.53	+0.5
1,058,448	-		EFB2_01026	0.53	+0.3
1,058,461	+		EFB2_01026	0.54	+0.8
1,058,461	+		EFB2_01026	0.54	+1.2
1,058,462	-		EFB2_01026	0.54	+0.4
1,058,462	-		EFB2_01026	0.54	-3.7
1,058,462	-		EFB2_01026	0.54	-0.2
1,058,462	-		EFB2_01026	0.54	+1.7
1,058,506	+		EFB2_01026	0.57	+1.0
1,058,506	+		EFB2_01026	0.57	-0.3
1,058,507	-		EFB2_01026	0.57	+2.3
1,058,507	-		EFB2_01026	0.57	-1.5
1,058,507	-		EFB2_01026	0.57	+0.9
1,058,507	-		EFB2_01026	0.57	+0.1
1,058,507	-		EFB2_01026	0.57	-1.5
1,058,602	+		EFB2_01026	0.62	-0.1
1,058,603	-		EFB2_01026	0.63	-0.6
1,058,605	-		EFB2_01026	0.63	+4.9
1,058,631	+		EFB2_01026	0.64	-0.7
1,058,631	+		EFB2_01026	0.64	-2.8
1,058,631	+		EFB2_01026	0.64	-0.7
1,058,631	+		EFB2_01026	0.64	+0.1
1,058,631	+		EFB2_01026	0.64	+0.9
1,058,631	+		EFB2_01026	0.64	+0.6
1,058,631	+		EFB2_01026	0.64	-1.4
1,058,631	+		EFB2_01026	0.64	+1.1
1,058,631	+		EFB2_01026	0.64	-1.1
1,058,631	+		EFB2_01026	0.64	-2.6
1,058,631	+		EFB2_01026	0.64	+2.1
1,058,631	+		EFB2_01026	0.64	+0.3
1,058,631	+		EFB2_01026	0.64	-0.5
1,058,631	+		EFB2_01026	0.64	+0.0
1,058,631	+		EFB2_01026	0.64	-0.4
1,058,631	+		EFB2_01026	0.64	-1.3
1,058,631	+		EFB2_01026	0.64	+0.3
1,058,631	+		EFB2_01026	0.64	-0.1
1,058,631	+		EFB2_01026	0.64	-0.6
1,058,631	+		EFB2_01026	0.64	-0.3
1,058,631	+		EFB2_01026	0.64	+1.9
1,058,632	-		EFB2_01026	0.64	+0.3
1,058,632	-		EFB2_01026	0.64	-0.3
1,058,632	-		EFB2_01026	0.64	+0.8
1,058,632	-		EFB2_01026	0.64	-3.1
1,058,632	-		EFB2_01026	0.64	-2.0
1,058,632	-		EFB2_01026	0.64	+0.2
1,058,632	-		EFB2_01026	0.64	-0.4
1,058,632	-		EFB2_01026	0.64	-0.4
1,058,632	-		EFB2_01026	0.64	-0.3
1,058,632	-		EFB2_01026	0.64	-2.7
1,058,632	-		EFB2_01026	0.64	-0.4
1,058,632	-		EFB2_01026	0.64	+0.3
1,058,632	-		EFB2_01026	0.64	-0.1
1,058,632	-		EFB2_01026	0.64	-2.2
1,058,632	-		EFB2_01026	0.64	+1.4
1,058,632	-		EFB2_01026	0.64	+1.1
1,058,632	-		EFB2_01026	0.64	-2.6
1,058,632	-		EFB2_01026	0.64	+2.6
1,058,632	-		EFB2_01026	0.64	+1.1
1,058,686	+		EFB2_01026	0.68	-3.3
1,058,687	-		EFB2_01026	0.68	-3.0
1,058,687	-		EFB2_01026	0.68	-1.0
1,058,722	+		EFB2_01026	0.70	+0.6
1,058,722	+		EFB2_01026	0.70	+0.4
1,058,723	-		EFB2_01026	0.70	+2.7
1,058,723	-		EFB2_01026	0.70	+0.3
1,058,723	-		EFB2_01026	0.70	+0.8
1,058,723	-		EFB2_01026	0.70	-0.8
1,058,723	-		EFB2_01026	0.70	-0.5
1,058,723	-		EFB2_01026	0.70	+1.9
1,058,723	-		EFB2_01026	0.70	+0.9
1,058,723	-		EFB2_01026	0.70	+0.1
1,058,733	+		EFB2_01026	0.71	+0.7
1,058,734	-		EFB2_01026	0.71	-2.3
1,058,758	+		EFB2_01026	0.72	-1.4
1,058,758	+		EFB2_01026	0.72	-1.4
1,058,825	+		EFB2_01026	0.76	+1.0
1,058,825	+		EFB2_01026	0.76	-2.3
1,058,826	-		EFB2_01026	0.76	+2.5
1,058,826	-		EFB2_01026	0.76	+1.4
1,058,826	-		EFB2_01026	0.76	+1.7
1,058,866	+		EFB2_01026	0.79	+1.0
1,058,866	+		EFB2_01026	0.79	+0.1
1,058,866	+		EFB2_01026	0.79	-2.1
1,058,866	+		EFB2_01026	0.79	-1.7
1,058,866	+		EFB2_01026	0.79	-3.0
1,058,866	+		EFB2_01026	0.79	-0.9
1,058,867	-		EFB2_01026	0.79	-0.5
1,058,867	-		EFB2_01026	0.79	+0.6
1,058,867	-		EFB2_01026	0.79	-2.4
1,058,867	-		EFB2_01026	0.79	-1.1
1,058,867	-		EFB2_01026	0.79	+0.0
1,058,867	-		EFB2_01026	0.79	+0.0
1,058,867	-		EFB2_01026	0.79	-1.7
1,058,869	+		EFB2_01026	0.79	-0.9
1,058,869	+		EFB2_01026	0.79	-0.6
1,058,869	+		EFB2_01026	0.79	+1.0
1,058,869	+		EFB2_01026	0.79	-0.3
1,058,869	+		EFB2_01026	0.79	-0.3
1,058,870	-		EFB2_01026	0.79	-3.0
1,058,870	-		EFB2_01026	0.79	-2.4
1,058,870	-		EFB2_01026	0.79	+0.8
1,058,878	+		EFB2_01026	0.79	+0.6
1,058,878	+		EFB2_01026	0.79	+0.1
1,058,878	+		EFB2_01026	0.79	+0.9
1,058,878	+		EFB2_01026	0.79	-0.6
1,058,878	+		EFB2_01026	0.79	-1.0
1,058,878	+		EFB2_01026	0.79	-0.9
1,058,878	+		EFB2_01026	0.79	-0.7
1,058,879	-		EFB2_01026	0.80	-0.3
1,058,879	-		EFB2_01026	0.80	-2.3
1,058,879	-		EFB2_01026	0.80	-1.9
1,058,879	-		EFB2_01026	0.80	+1.7
1,058,879	-		EFB2_01026	0.80	-0.8
1,058,917	+		EFB2_01026	0.82	+0.4
1,058,992	+		EFB2_01026	0.86	-0.8
1,058,993	-		EFB2_01026	0.87	-0.1
1,059,141	+				+1.9
1,059,141	+				-1.6
1,059,141	+				-0.3
1,059,141	+				+1.0
1,059,142	-				+0.6
1,059,142	-				+0.5
1,059,142	-				+0.3
1,059,178	+				+1.7
1,059,209	+				+0.3
1,059,209	+				+0.3
1,059,209	+				+1.7
1,059,209	+				-0.2
1,059,210	-				+1.2
1,059,210	-				-0.4
1,059,210	-				+0.1
1,059,230	+				-0.5
1,059,230	+				-0.6
1,059,230	+				-0.4
1,059,230	+				-0.4
1,059,230	+				-0.4
1,059,230	+				+1.6
1,059,230	+				+3.4
1,059,230	+				-0.6
1,059,230	+				+0.7
1,059,230	+				-2.3
1,059,230	+				-0.7
1,059,230	+				+0.9
1,059,231	-				-1.4
1,059,231	-				-1.5
1,059,231	-				-0.4
1,059,231	-				+0.1
1,059,231	-				+0.7
1,059,231	-				+1.3
1,059,231	-				-0.3
1,059,231	-				-1.3
1,059,231	-				+0.7
1,059,231	-				-2.3
1,059,231	-				-2.5
1,059,233	+				+0.0
1,059,234	-				+0.3
1,059,234	-				+1.1
1,059,234	-				-0.7
1,059,234	-				+0.9
1,059,253	+				-2.7
1,059,253	+				-0.2
1,059,254	-				+0.6
1,059,254	-				+2.5
1,059,309	+				+0.2
1,059,309	+				+0.9
1,059,315	-				+1.5
1,059,371	+		EFB2_01027	0.13	+0.6
1,059,372	-		EFB2_01027	0.13	-2.9
1,059,372	-		EFB2_01027	0.13	+0.9
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