Strain Fitness in Escherichia fergusonii Becca around EFB2_00989

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,012,537	+		EFB2_00987	0.38	+0.6
1,012,537	+		EFB2_00987	0.38	+2.9
1,012,604	+		EFB2_00987	0.45	-2.2
1,012,604	+		EFB2_00987	0.45	+0.7
1,012,604	+		EFB2_00987	0.45	-1.2
1,012,605	-		EFB2_00987	0.45	-1.5
1,012,605	-		EFB2_00987	0.45	+0.9
1,012,605	-		EFB2_00987	0.45	-1.2
1,012,659	+		EFB2_00987	0.51	-0.2
1,012,659	+		EFB2_00987	0.51	-1.0
1,012,659	+		EFB2_00987	0.51	-0.8
1,012,659	+		EFB2_00987	0.51	+0.5
1,012,659	+		EFB2_00987	0.51	-0.6
1,012,660	-		EFB2_00987	0.51	-1.2
1,012,720	+		EFB2_00987	0.58	-2.8
1,012,721	-		EFB2_00987	0.58	-0.4
1,012,721	-		EFB2_00987	0.58	-2.1
1,012,721	-		EFB2_00987	0.58	+0.1
1,012,721	-		EFB2_00987	0.58	+0.8
1,012,721	-		EFB2_00987	0.58	-0.7
1,012,885	+		EFB2_00987	0.77	-2.3
1,012,885	+		EFB2_00987	0.77	+0.4
1,012,886	-		EFB2_00987	0.77	-0.3
1,012,886	-		EFB2_00987	0.77	-0.6
1,012,886	-		EFB2_00987	0.77	-0.3
1,012,886	-		EFB2_00987	0.77	-3.0
1,012,888	+		EFB2_00987	0.77	-0.3
1,012,889	-		EFB2_00987	0.77	-0.7
1,012,935	+		EFB2_00987	0.82	-1.0
1,012,936	-		EFB2_00987	0.82	+1.8
1,012,942	+		EFB2_00987	0.83	+0.9
1,012,942	+		EFB2_00987	0.83	+0.2
1,012,943	-		EFB2_00987	0.83	+0.2
1,012,943	-		EFB2_00987	0.83	+1.5
1,012,943	-		EFB2_00987	0.83	-0.1
1,012,962	+		EFB2_00987	0.85	+1.7
1,012,962	+		EFB2_00987	0.85	-0.3
1,012,962	+		EFB2_00987	0.85	+0.6
1,012,962	+		EFB2_00987	0.85	-2.9
1,012,963	-		EFB2_00987	0.85	-1.2
1,012,963	-		EFB2_00987	0.85	-1.9
1,012,977	+		EFB2_00987	0.87	+1.7
1,012,977	+		EFB2_00987	0.87	-0.4
1,012,977	+		EFB2_00987	0.87	+0.2
1,012,977	+		EFB2_00987	0.87	-1.8
1,012,977	+		EFB2_00987	0.87	-0.1
1,012,978	-		EFB2_00987	0.87	+1.2
1,012,978	-		EFB2_00987	0.87	-2.6
1,012,978	-		EFB2_00987	0.87	-2.7
1,012,978	-		EFB2_00987	0.87	+0.6
1,012,978	-		EFB2_00987	0.87	-1.2
1,012,978	-		EFB2_00987	0.87	-0.3
1,012,978	-		EFB2_00987	0.87	-0.8
1,013,004	+		EFB2_00987	0.90	-2.4
1,013,004	+		EFB2_00987	0.90	-2.0
1,013,005	-				-2.0
1,013,005	-				+0.3
1,013,047	+				-0.5
1,013,047	+				+0.2
1,013,047	+				-1.1
1,013,047	+				+1.1
1,013,048	-				-0.3
1,013,048	-				-0.5
1,013,048	-				-2.6
1,013,048	-				-2.0
1,013,048	-				+0.8
1,013,048	-				-2.2
1,013,048	-				-3.1
1,013,068	+				-0.1
1,013,068	+				-0.6
1,013,069	-				-3.0
1,013,069	-				+0.6
1,013,069	-				-0.1
1,013,069	-				+0.3
1,013,069	-				-0.1
1,013,069	-				-0.2
1,013,069	-				+1.9
1,013,069	-				+1.3
1,013,079	-				-0.6
1,013,079	-				-0.8
1,013,079	-				+1.0
1,013,079	-				-1.8
1,013,079	-				+0.6
1,013,114	+				+0.1
1,013,114	+				+1.1
1,013,114	+				+2.6
1,013,114	+				-0.1
1,013,115	-				+2.5
1,013,115	-				-0.4
1,013,115	-				-0.9
1,013,115	-				+1.3
1,013,133	+				-0.8
1,013,133	+				-0.7
1,013,133	+				-1.1
1,013,133	+				-0.4
1,013,133	+				+0.6
1,013,133	+				-0.3
1,013,133	+				+0.2
1,013,133	+				-0.9
1,013,133	+				+0.3
1,013,133	+				+0.3
1,013,133	+				+0.1
1,013,133	+				-1.8
1,013,134	-				-0.4
1,013,134	-				-0.4
1,013,134	-				-1.5
1,013,134	-				-2.4
1,013,134	-				+0.5
1,013,134	-				-0.3
1,013,134	-				-0.8
1,013,134	-				-0.9
1,013,134	-				-1.1
1,013,134	-				+0.1
1,013,134	-				-0.3
1,013,160	+				-3.4
1,013,160	+				+0.0
1,013,160	+				-1.2
1,013,160	+				+0.7
1,013,160	+				-4.1
1,013,160	+				-1.9
1,013,160	+				+1.1
1,013,160	+				+0.8
1,013,160	+				+1.4
1,013,161	-				-3.2
1,013,161	-				-0.3
1,013,161	-				-0.0
1,013,161	-				-1.4
1,013,161	-				+1.5
1,013,161	-				-0.3
1,013,161	-				+0.6
1,013,161	-				-0.9
1,013,161	-				-0.4
1,013,161	-				+0.4
1,013,161	-				+0.1
1,013,161	-				-0.6
1,013,162	+				+1.0
1,013,162	+				-0.8
1,013,162	+				+1.6
1,013,163	-				-1.9
1,013,163	-				-2.6
1,013,163	-				-0.6
1,013,163	-				+0.1
1,013,163	-				-1.6
1,013,163	-				-0.4
1,013,163	-				+0.7
1,013,163	-				-1.3
1,013,163	-				+0.6
1,013,190	+				+0.9
1,013,190	+				-0.3
1,013,190	+				+0.9
1,013,190	+				+0.2
1,013,191	-				+0.3
1,013,191	-				+0.9
1,013,191	-				-0.2
1,013,212	+				+0.3
1,013,212	+				-0.2
1,013,212	+				+4.5
1,013,212	+				-0.1
1,013,213	-				+0.7
1,013,213	-				-1.7
1,013,213	-				-0.2
1,013,213	-				-1.1
1,013,233	+				-0.9
1,013,307	-		EFB2_00988	0.31	+0.8
1,013,362	+		EFB2_00988	0.55	-1.4
1,013,363	-		EFB2_00988	0.55	-3.2
1,013,363	-		EFB2_00988	0.55	+1.2
1,013,363	-		EFB2_00988	0.55	-1.7
1,013,376	+		EFB2_00988	0.61	-2.1
1,013,376	+		EFB2_00988	0.61	+0.9
1,013,376	+		EFB2_00988	0.61	+1.0
1,013,376	+		EFB2_00988	0.61	+0.8
1,013,376	+		EFB2_00988	0.61	-1.0
1,013,376	+		EFB2_00988	0.61	-3.3
1,013,376	+		EFB2_00988	0.61	+0.6
1,013,376	+		EFB2_00988	0.61	-2.8
1,013,376	+		EFB2_00988	0.61	+2.4
1,013,376	+		EFB2_00988	0.61	+0.2
1,013,376	+		EFB2_00988	0.61	-2.1
1,013,376	+		EFB2_00988	0.61	-0.7
1,013,376	+		EFB2_00988	0.61	-0.4
1,013,376	+		EFB2_00988	0.61	-3.2
1,013,376	+		EFB2_00988	0.61	-2.5
1,013,376	+		EFB2_00988	0.61	-0.7
1,013,376	+		EFB2_00988	0.61	-0.3
1,013,376	+		EFB2_00988	0.61	+0.4
1,013,376	+		EFB2_00988	0.61	-0.9
1,013,376	+		EFB2_00988	0.61	+1.3
1,013,377	-		EFB2_00988	0.61	+0.8
1,013,377	-		EFB2_00988	0.61	-2.1
1,013,377	-		EFB2_00988	0.61	-0.3
1,013,377	-		EFB2_00988	0.61	-0.2
1,013,377	-		EFB2_00988	0.61	+0.1
1,013,377	-		EFB2_00988	0.61	+1.4
1,013,377	-		EFB2_00988	0.61	+0.4
1,013,377	-		EFB2_00988	0.61	-2.6
1,013,377	-		EFB2_00988	0.61	+0.3
1,013,377	-		EFB2_00988	0.61	-0.0
1,013,377	-		EFB2_00988	0.61	+0.6
1,013,377	-		EFB2_00988	0.61	+1.3
1,013,377	-		EFB2_00988	0.61	+0.6
1,013,377	-		EFB2_00988	0.61	+0.1
1,013,377	-		EFB2_00988	0.61	-0.9
1,013,377	-		EFB2_00988	0.61	-1.3
1,013,377	-		EFB2_00988	0.61	-1.0
1,013,377	-		EFB2_00988	0.61	-0.3
1,013,377	-		EFB2_00988	0.61	-1.1
1,013,377	-		EFB2_00988	0.61	-0.7
1,013,377	-		EFB2_00988	0.61	-1.2
1,013,384	-		EFB2_00988	0.65	-0.4
1,013,384	-		EFB2_00988	0.65	+0.6
1,013,427	-		EFB2_00988	0.83	+0.5
1,013,479	+				-0.9
1,013,479	+				+0.3
1,013,479	+				+0.2
1,013,479	+				+1.6
1,013,480	-				-2.5
1,013,480	-				-2.3
1,013,481	+				-0.1
1,013,481	+				+1.0
1,013,481	+				-2.2
1,013,481	+				+0.1
1,013,481	+				+1.2
1,013,482	-				-0.6
1,013,482	-				-2.3
1,013,482	-				-0.1
1,013,482	-				-0.0
1,013,482	-				+0.0
1,013,482	-				-1.9
1,013,482	-				-0.2
1,013,482	-				+1.0
1,013,482	-				-3.1
1,013,482	-				+1.8
1,013,482	-				+2.1
1,013,482	-				+1.8
1,013,482	-				+0.3
1,013,483	+				+1.2
1,013,483	+				-0.4
1,013,483	+				+0.3
1,013,483	+				+0.8
1,013,483	+				-0.5
1,013,483	+				+2.2
1,013,483	+				-0.6
1,013,483	+				-2.1
1,013,483	+				-1.1
1,013,483	+				+2.3
1,013,483	+				-0.2
1,013,483	+				+0.1
1,013,483	+				-0.6
1,013,483	+				-0.3
1,013,483	+				-1.5
1,013,483	+				-1.0
1,013,483	+				-0.4
1,013,483	+				+2.1
1,013,483	+				-0.1
1,013,483	+				-0.2
1,013,483	+				-1.9
1,013,483	+				+0.3
1,013,483	+				+0.9
1,013,483	+				+0.3
1,013,483	+				-2.4
1,013,483	+				-1.8
1,013,483	+				-2.2
1,013,483	+				-0.2
1,013,483	+				-1.0
1,013,483	+				-0.5
1,013,502	+				-1.0
1,014,168	+				-1.1
1,014,168	+				-0.5
1,014,276	+				-2.2
1,014,276	+				-2.0
1,014,277	-				-1.3
1,014,277	-				-2.2
1,014,286	-				-0.6
1,014,286	-				+0.4
1,014,296	-				-1.2
1,014,296	-				-2.4
1,014,323	+				-1.8
1,014,323	+				+0.7
1,014,324	-				-1.6
1,014,354	+				-1.0
1,014,354	+				-2.8
1,014,354	+				+0.3
1,014,365	+				-2.3
1,014,368	+				-0.5
1,014,368	+				+0.4
1,014,368	+				-1.6
1,014,378	+				-1.9
1,014,378	+				+0.7
1,014,379	-				-2.5
1,014,379	-				-2.1
1,014,379	-				-2.5
1,014,379	-				-1.5
1,014,379	-				-3.0
1,014,379	-				+0.8
1,014,379	-				+1.1
1,014,433	+				-0.6
1,014,434	-				+0.2
1,014,434	-				-0.7
1,014,434	-				+2.3
1,014,446	+				+0.8
1,014,447	-				-2.6
1,014,468	+				-1.6
1,014,468	+				-0.6
1,014,468	+				+0.6
1,014,468	+				+0.0
1,014,468	+				+0.6
1,014,469	-				+0.3
1,014,469	-				-0.2
1,014,469	-				-1.0
1,014,469	-				-1.4
1,014,469	-				-0.4
1,014,469	-				+0.3
1,014,469	-				+0.8
1,014,469	-				+1.7
1,014,482	+				+1.0
1,014,482	+				-1.4
1,014,482	+				-1.5
1,014,482	+				+0.4
1,014,483	-				-0.8
1,014,530	-				-1.3
1,014,530	-				+1.9
1,014,530	-				+1.6
1,014,530	-				+0.4
1,014,575	+		EFB2_00990	0.11	+1.3
1,014,575	+		EFB2_00990	0.11	-1.3
1,014,575	+		EFB2_00990	0.11	-0.4
1,014,576	-		EFB2_00990	0.11	+0.4
1,014,576	-		EFB2_00990	0.11	-2.9
1,014,576	-		EFB2_00990	0.11	+0.6
1,014,576	-		EFB2_00990	0.11	+0.1
1,014,670	-		EFB2_00990	0.19	-0.4
1,014,684	+		EFB2_00990	0.20	-1.4
1,014,684	+		EFB2_00990	0.20	-0.7
1,014,685	-		EFB2_00990	0.20	-1.2
1,014,685	-		EFB2_00990	0.20	-0.2
1,014,686	+		EFB2_00990	0.20	-2.4
1,014,686	+		EFB2_00990	0.20	-0.4
1,014,686	+		EFB2_00990	0.20	+1.1
1,014,686	+		EFB2_00990	0.20	-0.8
1,014,686	+		EFB2_00990	0.20	+0.1
1,014,686	+		EFB2_00990	0.20	-0.6
1,014,687	-		EFB2_00990	0.20	+1.3
1,014,687	-		EFB2_00990	0.20	-1.3
1,014,687	-		EFB2_00990	0.20	-0.4
1,014,687	-		EFB2_00990	0.20	+0.1
1,014,687	-		EFB2_00990	0.20	+1.9
1,014,687	-		EFB2_00990	0.20	-0.3
1,014,687	-		EFB2_00990	0.20	+0.7
1,014,687	-		EFB2_00990	0.20	+0.1
1,014,687	-		EFB2_00990	0.20	-2.4
1,014,738	-		EFB2_00990	0.24	+1.4
1,014,738	-		EFB2_00990	0.24	-2.5
1,014,738	-		EFB2_00990	0.24	-1.1
1,014,741	+		EFB2_00990	0.25	+0.2
1,014,742	-		EFB2_00990	0.25	+0.6
1,014,742	-		EFB2_00990	0.25	-1.6
1,014,742	-		EFB2_00990	0.25	+1.5
1,014,742	-		EFB2_00990	0.25	-0.8
1,014,759	+		EFB2_00990	0.26	+0.4
1,014,759	+		EFB2_00990	0.26	-0.9
1,014,759	+		EFB2_00990	0.26	+0.2
1,014,759	+		EFB2_00990	0.26	-1.2
1,014,760	-		EFB2_00990	0.26	-0.5
1,014,803	+		EFB2_00990	0.30	-1.2
1,014,803	+		EFB2_00990	0.30	-0.6
1,014,803	+		EFB2_00990	0.30	-0.1
1,014,803	+		EFB2_00990	0.30	+1.8
1,014,803	+		EFB2_00990	0.30	-1.6
1,014,803	+		EFB2_00990	0.30	+1.2
1,014,803	+		EFB2_00990	0.30	-0.5
1,014,804	-		EFB2_00990	0.30	+1.6
1,014,831	+		EFB2_00990	0.32	-0.6
1,014,831	+		EFB2_00990	0.32	-1.1
1,014,831	+		EFB2_00990	0.32	-0.1
1,014,831	+		EFB2_00990	0.32	+2.0
1,014,831	+		EFB2_00990	0.32	-3.0
1,014,832	-		EFB2_00990	0.32	+2.9
1,014,832	-		EFB2_00990	0.32	-1.1
1,014,832	-		EFB2_00990	0.32	-0.8
1,014,910	+		EFB2_00990	0.38	+0.1
1,014,911	-		EFB2_00990	0.39	+1.7
1,014,918	+		EFB2_00990	0.39	+0.2
1,014,918	+		EFB2_00990	0.39	+2.6
1,014,918	+		EFB2_00990	0.39	-2.5
1,014,918	+		EFB2_00990	0.39	-2.2
1,014,918	+		EFB2_00990	0.39	-3.2
1,014,919	-		EFB2_00990	0.39	-3.4
1,014,919	-		EFB2_00990	0.39	+1.6
1,014,919	-		EFB2_00990	0.39	+0.2
1,014,919	-		EFB2_00990	0.39	+0.6
1,014,919	-		EFB2_00990	0.39	+0.6
1,014,919	-		EFB2_00990	0.39	-2.6
1,014,919	-		EFB2_00990	0.39	-1.2
1,014,919	-		EFB2_00990	0.39	-2.6
1,014,925	-		EFB2_00990	0.40	+0.8
1,014,925	-		EFB2_00990	0.40	+0.9
1,014,936	+		EFB2_00990	0.41	-1.2
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