Strain Fitness in Escherichia fergusonii Becca around EFB2_00844

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
865,240	+		EFB2_00842	0.57	+2.3
865,251	+		EFB2_00842	0.58	+0.1
865,251	+		EFB2_00842	0.58	+1.5
865,252	-		EFB2_00842	0.58	+0.7
865,252	-		EFB2_00842	0.58	-2.6
865,302	+		EFB2_00842	0.64	-0.6
865,302	+		EFB2_00842	0.64	+2.9
865,302	+		EFB2_00842	0.64	-0.8
865,302	+		EFB2_00842	0.64	+0.1
865,303	-		EFB2_00842	0.64	+0.4
865,303	-		EFB2_00842	0.64	+0.0
865,303	-		EFB2_00842	0.64	-1.7
865,303	-		EFB2_00842	0.64	+0.5
865,303	-		EFB2_00842	0.64	+0.5
865,336	+		EFB2_00842	0.68	+0.2
865,336	+		EFB2_00842	0.68	+0.5
865,337	-		EFB2_00842	0.69	-2.4
865,339	+		EFB2_00842	0.69	-0.4
865,339	+		EFB2_00842	0.69	+0.5
865,339	+		EFB2_00842	0.69	+0.3
865,340	-		EFB2_00842	0.69	-2.2
865,340	-		EFB2_00842	0.69	-0.2
865,340	-		EFB2_00842	0.69	+0.5
865,340	-		EFB2_00842	0.69	+1.0
865,340	-		EFB2_00842	0.69	-1.0
865,340	-		EFB2_00842	0.69	+2.1
865,340	-		EFB2_00842	0.69	+0.4
865,346	+		EFB2_00842	0.70	+1.3
865,347	-		EFB2_00842	0.70	+2.2
865,362	+		EFB2_00842	0.72	+0.0
865,371	+		EFB2_00842	0.73	+2.9
865,371	+		EFB2_00842	0.73	-0.9
865,372	-		EFB2_00842	0.73	+1.7
865,372	-		EFB2_00842	0.73	-0.8
865,372	-		EFB2_00842	0.73	+0.1
865,381	+		EFB2_00842	0.74	-0.7
865,381	+		EFB2_00842	0.74	-1.8
865,382	-		EFB2_00842	0.74	-0.0
865,392	+		EFB2_00842	0.75	+1.4
865,392	+		EFB2_00842	0.75	-1.2
865,392	+		EFB2_00842	0.75	-3.1
865,393	-		EFB2_00842	0.75	-2.1
865,393	-		EFB2_00842	0.75	-0.0
865,393	-		EFB2_00842	0.75	-1.7
865,407	+		EFB2_00842	0.77	+0.3
865,407	+		EFB2_00842	0.77	-1.5
865,407	+		EFB2_00842	0.77	+0.5
865,407	+		EFB2_00842	0.77	+0.7
865,407	+		EFB2_00842	0.77	+0.2
865,407	+		EFB2_00842	0.77	+1.8
865,407	+		EFB2_00842	0.77	+0.8
865,407	+		EFB2_00842	0.77	+0.3
865,407	+		EFB2_00842	0.77	+0.3
865,407	+		EFB2_00842	0.77	-0.3
865,407	+		EFB2_00842	0.77	-1.9
865,407	+		EFB2_00842	0.77	-1.0
865,407	+		EFB2_00842	0.77	+0.3
865,407	+		EFB2_00842	0.77	-1.8
865,407	+		EFB2_00842	0.77	-1.8
865,407	+		EFB2_00842	0.77	-0.0
865,407	+		EFB2_00842	0.77	+0.7
865,408	-		EFB2_00842	0.77	+0.7
865,408	-		EFB2_00842	0.77	-1.0
865,408	-		EFB2_00842	0.77	+0.1
865,408	-		EFB2_00842	0.77	+1.1
865,408	-		EFB2_00842	0.77	-1.0
865,408	-		EFB2_00842	0.77	-0.1
865,408	-		EFB2_00842	0.77	+1.0
865,408	-		EFB2_00842	0.77	+0.5
865,408	-		EFB2_00842	0.77	+4.9
865,408	-		EFB2_00842	0.77	-1.2
865,408	-		EFB2_00842	0.77	-1.0
865,408	-		EFB2_00842	0.77	-0.1
865,408	-		EFB2_00842	0.77	+0.8
865,408	-		EFB2_00842	0.77	-0.3
865,408	-		EFB2_00842	0.77	+2.2
865,410	+		EFB2_00842	0.78	-3.1
865,410	+		EFB2_00842	0.78	+0.3
865,410	+		EFB2_00842	0.78	+0.4
865,410	+		EFB2_00842	0.78	+0.7
865,411	-		EFB2_00842	0.78	+0.8
865,411	-		EFB2_00842	0.78	+0.3
865,411	-		EFB2_00842	0.78	-3.0
865,411	-		EFB2_00842	0.78	-0.7
865,411	-		EFB2_00842	0.78	-2.8
865,411	-		EFB2_00842	0.78	+1.7
865,411	-		EFB2_00842	0.78	-1.5
865,425	+		EFB2_00842	0.79	-2.7
865,425	+		EFB2_00842	0.79	+0.5
865,425	+		EFB2_00842	0.79	+1.7
865,426	-		EFB2_00842	0.80	-3.0
865,426	-		EFB2_00842	0.80	+1.2
865,491	+		EFB2_00842	0.88	+0.5
865,491	+		EFB2_00842	0.88	-0.6
865,491	+		EFB2_00842	0.88	+0.0
865,491	+		EFB2_00842	0.88	+0.2
865,491	+		EFB2_00842	0.88	-0.3
865,491	+		EFB2_00842	0.88	-1.3
865,491	+		EFB2_00842	0.88	-0.7
865,491	+		EFB2_00842	0.88	-0.6
865,492	-		EFB2_00842	0.88	+0.6
865,492	-		EFB2_00842	0.88	+1.6
865,492	-		EFB2_00842	0.88	-0.5
865,492	-		EFB2_00842	0.88	-1.4
865,492	-		EFB2_00842	0.88	-0.3
865,492	-		EFB2_00842	0.88	-0.8
865,492	-		EFB2_00842	0.88	-0.6
865,492	-		EFB2_00842	0.88	+0.5
865,492	-		EFB2_00842	0.88	-3.6
865,493	+		EFB2_00842	0.88	+1.5
865,493	+		EFB2_00842	0.88	+0.8
865,493	+		EFB2_00842	0.88	-0.8
865,493	+		EFB2_00842	0.88	-0.9
865,493	+		EFB2_00842	0.88	-1.9
865,494	-		EFB2_00842	0.88	+0.7
865,494	-		EFB2_00842	0.88	+0.0
865,494	-		EFB2_00842	0.88	+3.9
865,494	-		EFB2_00842	0.88	+0.7
865,494	-		EFB2_00842	0.88	-3.6
865,494	-		EFB2_00842	0.88	+0.7
865,494	-		EFB2_00842	0.88	-0.5
865,494	-		EFB2_00842	0.88	+0.5
865,494	-		EFB2_00842	0.88	+0.7
865,494	-		EFB2_00842	0.88	-0.9
865,494	-		EFB2_00842	0.88	+1.7
865,505	-		EFB2_00842	0.89	+0.7
865,560	+				-0.1
865,561	-				-0.6
865,561	-				-1.1
865,561	-				+1.1
865,571	+				-0.4
865,576	-				+1.1
865,596	-				+0.3
865,623	+				-1.4
865,630	+				-1.2
865,633	+				+0.8
865,650	-				-3.2
865,653	+				+0.0
865,654	-				-2.6
865,692	-				+1.7
865,698	-		EFB2_00843	0.10	-0.1
865,722	-		EFB2_00843	0.16	-0.2
865,817	-		EFB2_00843	0.39	+1.3
865,819	-		EFB2_00843	0.39	-0.6
865,819	-		EFB2_00843	0.39	-0.9
865,819	-		EFB2_00843	0.39	+0.5
865,819	-		EFB2_00843	0.39	-2.1
865,823	+		EFB2_00843	0.40	+0.9
865,824	-		EFB2_00843	0.41	-0.0
865,839	+		EFB2_00843	0.44	+1.3
865,866	+		EFB2_00843	0.51	+0.2
865,866	+		EFB2_00843	0.51	-0.6
865,867	-		EFB2_00843	0.51	-2.7
865,921	+		EFB2_00843	0.64	-1.0
865,921	+		EFB2_00843	0.64	-2.6
865,921	+		EFB2_00843	0.64	-1.5
865,921	+		EFB2_00843	0.64	+0.1
865,922	-		EFB2_00843	0.64	+0.4
865,922	-		EFB2_00843	0.64	+1.0
865,922	-		EFB2_00843	0.64	-1.0
865,922	-		EFB2_00843	0.64	-0.9
865,978	-		EFB2_00843	0.78	+0.2
865,982	-		EFB2_00843	0.79	-0.5
865,982	-		EFB2_00843	0.79	+0.4
865,988	+		EFB2_00843	0.81	-2.6
865,988	+		EFB2_00843	0.81	+1.0
865,988	+		EFB2_00843	0.81	-2.1
866,001	+		EFB2_00843	0.84	-2.7
866,001	+		EFB2_00843	0.84	-1.4
866,001	+		EFB2_00843	0.84	-1.8
866,002	-		EFB2_00843	0.84	+0.5
866,007	+		EFB2_00843	0.85	+0.8
866,007	+		EFB2_00843	0.85	-1.2
866,007	+		EFB2_00843	0.85	-2.4
866,007	+		EFB2_00843	0.85	-0.4
866,007	+		EFB2_00843	0.85	-1.7
866,008	-		EFB2_00843	0.85	+0.6
866,008	-		EFB2_00843	0.85	-0.2
866,008	-		EFB2_00843	0.85	-1.5
866,008	-		EFB2_00843	0.85	+1.6
866,008	-		EFB2_00843	0.85	-2.1
866,008	-		EFB2_00843	0.85	+0.9
866,008	-		EFB2_00843	0.85	-2.8
866,008	-		EFB2_00843	0.85	+1.3
866,013	+		EFB2_00843	0.87	+0.5
866,040	+				+0.0
866,054	+				+1.4
866,081	+				-2.6
866,082	-				-1.0
866,082	-				-2.6
866,118	+				+0.9
866,119	-				-1.3
866,174	+				-0.8
866,234	+				+0.2
866,237	+				+0.3
866,238	-				-1.0
866,256	+				-0.1
866,257	-				-0.4
866,293	-		EFB2_00844	0.11	-0.6
866,294	+		EFB2_00844	0.11	-2.8
866,318	+		EFB2_00844	0.14	-2.0
866,368	+		EFB2_00844	0.20	-2.3
866,369	-		EFB2_00844	0.20	-1.8
866,397	+		EFB2_00844	0.23	+0.3
866,397	+		EFB2_00844	0.23	-0.5
866,397	+		EFB2_00844	0.23	+1.4
866,397	+		EFB2_00844	0.23	-0.9
866,420	-		EFB2_00844	0.26	-0.1
866,459	+		EFB2_00844	0.30	+1.2
866,459	+		EFB2_00844	0.30	-0.1
866,459	+		EFB2_00844	0.30	-0.6
866,460	-		EFB2_00844	0.31	-0.6
866,460	-		EFB2_00844	0.31	+0.3
866,460	-		EFB2_00844	0.31	+0.1
866,535	+		EFB2_00844	0.40	+1.6
866,535	+		EFB2_00844	0.40	+2.0
866,535	+		EFB2_00844	0.40	+0.5
866,535	+		EFB2_00844	0.40	+1.3
866,535	+		EFB2_00844	0.40	+0.5
866,535	+		EFB2_00844	0.40	-1.4
866,535	+		EFB2_00844	0.40	-1.5
866,535	+		EFB2_00844	0.40	-0.0
866,535	+		EFB2_00844	0.40	-1.3
866,535	+		EFB2_00844	0.40	-0.5
866,536	-		EFB2_00844	0.40	+1.3
866,536	-		EFB2_00844	0.40	-0.1
866,536	-		EFB2_00844	0.40	-0.1
866,536	-		EFB2_00844	0.40	-2.2
866,536	-		EFB2_00844	0.40	-0.2
866,536	-		EFB2_00844	0.40	-1.2
866,611	-		EFB2_00844	0.49	+0.8
866,792	+		EFB2_00844	0.70	+1.3
866,792	+		EFB2_00844	0.70	+1.1
866,793	-		EFB2_00844	0.70	+1.6
866,796	+		EFB2_00844	0.70	-0.4
866,796	+		EFB2_00844	0.70	-0.3
866,796	+		EFB2_00844	0.70	-2.0
866,796	+		EFB2_00844	0.70	-0.3
866,796	+		EFB2_00844	0.70	-0.9
866,796	+		EFB2_00844	0.70	-1.3
866,796	+		EFB2_00844	0.70	+0.4
866,796	+		EFB2_00844	0.70	-1.0
866,796	+		EFB2_00844	0.70	+1.0
866,796	+		EFB2_00844	0.70	+1.5
866,796	+		EFB2_00844	0.70	-0.4
866,796	+		EFB2_00844	0.70	-1.6
866,796	+		EFB2_00844	0.70	-2.6
866,796	+		EFB2_00844	0.70	+0.9
866,796	+		EFB2_00844	0.70	-0.9
866,796	+		EFB2_00844	0.70	+0.2
866,796	+		EFB2_00844	0.70	-0.0
866,796	+		EFB2_00844	0.70	-0.4
866,796	+		EFB2_00844	0.70	-2.1
866,796	+		EFB2_00844	0.70	+0.2
866,796	+		EFB2_00844	0.70	+0.2
866,797	-		EFB2_00844	0.71	+0.5
866,797	-		EFB2_00844	0.71	+0.3
866,797	-		EFB2_00844	0.71	-2.6
866,797	-		EFB2_00844	0.71	-0.6
866,797	-		EFB2_00844	0.71	+1.6
866,797	-		EFB2_00844	0.71	-1.1
866,797	-		EFB2_00844	0.71	-0.8
866,797	-		EFB2_00844	0.71	+0.3
866,797	-		EFB2_00844	0.71	-1.6
866,797	-		EFB2_00844	0.71	+0.5
866,797	-		EFB2_00844	0.71	+0.7
866,797	-		EFB2_00844	0.71	-0.4
866,797	-		EFB2_00844	0.71	+0.2
866,797	-		EFB2_00844	0.71	+0.3
866,797	-		EFB2_00844	0.71	+0.2
866,797	-		EFB2_00844	0.71	-0.7
866,798	+		EFB2_00844	0.71	-1.3
866,798	+		EFB2_00844	0.71	-0.5
866,798	+		EFB2_00844	0.71	+0.2
866,799	-		EFB2_00844	0.71	-0.1
866,799	-		EFB2_00844	0.71	-0.2
866,807	+		EFB2_00844	0.72	-1.4
866,807	+		EFB2_00844	0.72	+1.1
866,807	+		EFB2_00844	0.72	+0.8
866,808	-		EFB2_00844	0.72	+0.9
866,808	-		EFB2_00844	0.72	-3.1
866,808	-		EFB2_00844	0.72	-0.5
866,808	-		EFB2_00844	0.72	-1.5
866,808	-		EFB2_00844	0.72	-2.8
866,808	-		EFB2_00844	0.72	-1.7
866,808	-		EFB2_00844	0.72	+1.2
866,808	-		EFB2_00844	0.72	+2.2
866,819	+		EFB2_00844	0.73	-0.2
866,819	+		EFB2_00844	0.73	-1.1
866,820	-		EFB2_00844	0.73	+0.8
866,820	-		EFB2_00844	0.73	+0.7
866,889	-		EFB2_00844	0.81	+0.7
866,914	+		EFB2_00844	0.84	+0.6
866,968	+				+1.5
866,968	+				-1.2
866,968	+				-3.4
866,968	+				-1.2
866,968	+				-0.5
866,969	-				-0.6
866,969	-				-0.4
866,969	-				+0.3
866,969	-				-1.2
866,969	-				+0.2
866,969	-				+0.3
866,969	-				+1.0
866,969	-				-0.6
866,969	-				-0.1
866,969	-				-1.2
866,993	+				-2.0
866,993	+				+0.7
866,994	-				-2.9
866,994	-				+2.0
866,994	-				-1.1
867,001	+				-3.6
867,001	+				+0.6
867,001	+				+1.2
867,002	-				-3.0
867,052	+				-0.9
867,052	+				+0.9
867,052	+				-0.1
867,052	+				+1.3
867,053	-				-0.2
867,088	+				+0.7
867,088	+				-0.9
867,088	+				-2.0
867,088	+				+0.2
867,088	+				-0.9
867,089	-				+0.6
867,089	-				+0.7
867,089	-				-1.2
867,089	-				+0.4
867,089	-				-1.8
867,089	-				-0.0
867,089	-				+0.4
867,089	-				-1.5
867,089	-				-1.8
867,089	-				-1.5
867,098	+				+0.8
867,100	+				+0.1
867,100	+				-0.7
867,100	+				+0.7
867,100	+				-1.5
867,100	+				+0.8
867,100	+				-2.0
867,100	+				-0.4
867,100	+				-0.3
867,100	+				-1.2
867,100	+				+0.9
867,100	+				-0.4
867,101	-				-0.2
867,101	-				+1.3
867,101	-				+0.6
867,101	-				+0.8
867,101	-				-0.8
867,101	-				+0.7
867,101	-				-0.7
867,101	-				+1.9
867,101	-				-1.4
867,101	-				-1.2
867,101	-				+0.9
867,109	+				-0.9
867,109	+				-0.6
867,110	-				+1.1
867,110	-				+1.6
867,110	-				+1.6
867,110	-				-1.4
867,145	-				+1.4
867,175	+				+2.4
867,175	+				+1.3
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