Strain Fitness in Escherichia fergusonii Becca around EFB2_00007

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
6,717	+				+0.6
6,717	+				-0.9
6,717	+				-1.1
6,718	-				-1.1
6,718	-				+0.3
6,718	-				+0.1
6,743	-				+1.6
6,764	+				-0.9
6,764	+				+0.6
6,764	+				-0.1
6,764	+				+0.1
6,764	+				+1.3
6,764	+				+0.9
6,764	+				-1.9
6,764	+				-0.1
6,764	+				-0.3
6,764	+				-2.1
6,764	+				+0.7
6,764	+				+0.5
6,764	+				-0.2
6,765	-				-0.8
6,765	-				-0.7
6,765	-				-0.9
6,765	-				+2.2
6,765	-				-2.3
6,765	-				-0.5
6,765	-				-3.2
6,765	-				+1.5
6,765	-				+0.1
6,765	-				-0.9
6,765	-				-2.0
6,799	-				-0.0
6,799	-				+1.1
6,799	-				+0.4
6,799	-				+0.6
6,852	+				+1.6
6,852	+				-3.4
6,887	+		EFB2_00006	0.13	+0.6
6,887	+		EFB2_00006	0.13	-0.6
6,887	+		EFB2_00006	0.13	-0.5
6,888	-		EFB2_00006	0.14	+0.4
6,888	-		EFB2_00006	0.14	+1.4
6,916	+		EFB2_00006	0.17	-2.5
6,917	-		EFB2_00006	0.17	+1.3
6,934	+		EFB2_00006	0.19	+0.1
6,934	+		EFB2_00006	0.19	+0.1
6,934	+		EFB2_00006	0.19	-2.7
6,935	-		EFB2_00006	0.19	-0.6
6,935	-		EFB2_00006	0.19	-0.2
6,935	-		EFB2_00006	0.19	-3.5
6,935	-		EFB2_00006	0.19	+1.3
6,935	-		EFB2_00006	0.19	-1.6
6,970	+		EFB2_00006	0.24	-1.9
6,970	+		EFB2_00006	0.24	+0.9
6,970	+		EFB2_00006	0.24	+0.0
6,971	-		EFB2_00006	0.24	+0.4
6,978	+		EFB2_00006	0.25	-0.3
6,978	+		EFB2_00006	0.25	+1.2
6,978	+		EFB2_00006	0.25	-2.1
6,978	+		EFB2_00006	0.25	-1.7
6,978	+		EFB2_00006	0.25	-1.3
6,978	+		EFB2_00006	0.25	+0.9
6,978	+		EFB2_00006	0.25	+1.9
6,978	+		EFB2_00006	0.25	-0.8
6,978	+		EFB2_00006	0.25	-1.0
6,978	+		EFB2_00006	0.25	-2.5
6,978	+		EFB2_00006	0.25	-0.9
6,978	+		EFB2_00006	0.25	-1.0
6,978	+		EFB2_00006	0.25	-0.3
6,978	+		EFB2_00006	0.25	+1.3
6,978	+		EFB2_00006	0.25	-1.2
6,979	-		EFB2_00006	0.25	-0.2
6,979	-		EFB2_00006	0.25	-0.5
6,979	-		EFB2_00006	0.25	-0.9
6,979	-		EFB2_00006	0.25	-0.2
6,979	-		EFB2_00006	0.25	+1.9
6,979	-		EFB2_00006	0.25	+0.5
6,979	-		EFB2_00006	0.25	-0.5
6,979	-		EFB2_00006	0.25	-1.0
6,979	-		EFB2_00006	0.25	+0.5
6,979	-		EFB2_00006	0.25	+0.0
6,979	-		EFB2_00006	0.25	+1.0
6,979	-		EFB2_00006	0.25	+0.0
6,979	-		EFB2_00006	0.25	-0.7
6,979	-		EFB2_00006	0.25	+0.3
6,982	+		EFB2_00006	0.25	+0.6
6,982	+		EFB2_00006	0.25	+1.7
6,982	+		EFB2_00006	0.25	+1.7
6,982	+		EFB2_00006	0.25	+0.3
6,982	+		EFB2_00006	0.25	+0.4
6,982	+		EFB2_00006	0.25	-1.0
6,983	-		EFB2_00006	0.25	-0.3
6,983	-		EFB2_00006	0.25	+0.6
6,983	-		EFB2_00006	0.25	+0.2
6,983	-		EFB2_00006	0.25	-0.7
6,983	-		EFB2_00006	0.25	+1.6
6,983	-		EFB2_00006	0.25	-0.6
6,983	-		EFB2_00006	0.25	+1.1
6,983	-		EFB2_00006	0.25	+0.3
6,983	-		EFB2_00006	0.25	+2.5
6,983	-		EFB2_00006	0.25	-1.2
6,983	-		EFB2_00006	0.25	-0.6
6,983	-		EFB2_00006	0.25	+0.0
6,983	-		EFB2_00006	0.25	+0.7
6,983	-		EFB2_00006	0.25	+0.9
6,983	-		EFB2_00006	0.25	+0.5
6,983	-		EFB2_00006	0.25	-0.6
6,983	-		EFB2_00006	0.25	-0.1
6,998	+		EFB2_00006	0.27	-2.6
6,999	-		EFB2_00006	0.27	-0.7
6,999	-		EFB2_00006	0.27	+0.2
6,999	-		EFB2_00006	0.27	+0.6
6,999	-		EFB2_00006	0.27	+1.3
6,999	-		EFB2_00006	0.27	+0.5
6,999	-		EFB2_00006	0.27	-1.1
7,017	+		EFB2_00006	0.29	+1.1
7,017	+		EFB2_00006	0.29	-2.0
7,017	+		EFB2_00006	0.29	-1.6
7,018	-		EFB2_00006	0.30	-0.1
7,018	-		EFB2_00006	0.30	+1.2
7,018	-		EFB2_00006	0.30	+0.5
7,018	-		EFB2_00006	0.30	+1.2
7,018	-		EFB2_00006	0.30	-1.8
7,018	-		EFB2_00006	0.30	-0.6
7,045	+		EFB2_00006	0.33	+1.7
7,046	-		EFB2_00006	0.33	-1.1
7,046	-		EFB2_00006	0.33	-0.1
7,046	-		EFB2_00006	0.33	+1.0
7,046	-		EFB2_00006	0.33	+1.9
7,046	-		EFB2_00006	0.33	+0.3
7,123	+		EFB2_00006	0.42	+2.4
7,123	+		EFB2_00006	0.42	-1.9
7,123	+		EFB2_00006	0.42	+1.6
7,123	+		EFB2_00006	0.42	+0.5
7,123	+		EFB2_00006	0.42	-1.1
7,123	+		EFB2_00006	0.42	+0.6
7,123	+		EFB2_00006	0.42	-1.0
7,124	-		EFB2_00006	0.43	-0.6
7,124	-		EFB2_00006	0.43	-0.7
7,140	+		EFB2_00006	0.45	+1.3
7,147	+		EFB2_00006	0.45	+0.8
7,147	+		EFB2_00006	0.45	-1.5
7,147	+		EFB2_00006	0.45	-2.3
7,147	+		EFB2_00006	0.45	-2.5
7,147	+		EFB2_00006	0.45	-2.0
7,147	+		EFB2_00006	0.45	+1.3
7,147	+		EFB2_00006	0.45	+0.8
7,148	-		EFB2_00006	0.46	-0.8
7,148	-		EFB2_00006	0.46	+0.9
7,148	-		EFB2_00006	0.46	-0.5
7,150	+		EFB2_00006	0.46	-1.1
7,150	+		EFB2_00006	0.46	-2.7
7,150	+		EFB2_00006	0.46	+2.2
7,150	+		EFB2_00006	0.46	-0.6
7,150	+		EFB2_00006	0.46	-3.2
7,150	+		EFB2_00006	0.46	-0.3
7,150	+		EFB2_00006	0.46	+0.7
7,150	+		EFB2_00006	0.46	+1.1
7,150	+		EFB2_00006	0.46	+0.3
7,150	+		EFB2_00006	0.46	+0.1
7,150	+		EFB2_00006	0.46	+0.5
7,150	+		EFB2_00006	0.46	-0.2
7,151	-		EFB2_00006	0.46	+1.5
7,151	-		EFB2_00006	0.46	+1.2
7,151	-		EFB2_00006	0.46	-0.2
7,151	-		EFB2_00006	0.46	+0.2
7,151	-		EFB2_00006	0.46	+1.6
7,222	-		EFB2_00006	0.55	-0.8
7,284	+		EFB2_00006	0.62	+1.3
7,285	-		EFB2_00006	0.62	+2.7
7,285	-		EFB2_00006	0.62	-0.6
7,285	-		EFB2_00006	0.62	+0.9
7,285	-		EFB2_00006	0.62	+0.8
7,309	+		EFB2_00006	0.65	+0.1
7,309	+		EFB2_00006	0.65	+0.4
7,309	+		EFB2_00006	0.65	-0.9
7,310	-		EFB2_00006	0.65	+0.1
7,310	-		EFB2_00006	0.65	+0.0
7,310	-		EFB2_00006	0.65	-0.8
7,333	+		EFB2_00006	0.68	+1.7
7,333	+		EFB2_00006	0.68	+0.5
7,333	+		EFB2_00006	0.68	+0.4
7,334	-		EFB2_00006	0.68	+1.4
7,334	-		EFB2_00006	0.68	-0.8
7,334	-		EFB2_00006	0.68	+0.2
7,334	-		EFB2_00006	0.68	-1.2
7,334	-		EFB2_00006	0.68	-1.1
7,334	-		EFB2_00006	0.68	-0.3
7,334	-		EFB2_00006	0.68	+0.4
7,371	+		EFB2_00006	0.73	-0.4
7,371	+		EFB2_00006	0.73	+0.7
7,371	+		EFB2_00006	0.73	-0.1
7,371	+		EFB2_00006	0.73	+0.2
7,371	+		EFB2_00006	0.73	+0.8
7,371	+		EFB2_00006	0.73	-0.4
7,372	-		EFB2_00006	0.73	-1.2
7,400	+		EFB2_00006	0.77	+0.5
7,400	+		EFB2_00006	0.77	-0.1
7,400	+		EFB2_00006	0.77	+0.3
7,400	+		EFB2_00006	0.77	+1.1
7,400	+		EFB2_00006	0.77	+1.8
7,400	+		EFB2_00006	0.77	+1.6
7,400	+		EFB2_00006	0.77	+0.4
7,400	+		EFB2_00006	0.77	+0.4
7,400	+		EFB2_00006	0.77	-1.0
7,400	+		EFB2_00006	0.77	-3.3
7,400	+		EFB2_00006	0.77	+0.7
7,400	+		EFB2_00006	0.77	+1.0
7,400	+		EFB2_00006	0.77	-0.8
7,400	+		EFB2_00006	0.77	-0.1
7,400	+		EFB2_00006	0.77	-0.2
7,400	+		EFB2_00006	0.77	+1.4
7,400	+		EFB2_00006	0.77	+1.2
7,400	+		EFB2_00006	0.77	+1.1
7,400	+		EFB2_00006	0.77	-0.7
7,401	-		EFB2_00006	0.77	+2.1
7,401	-		EFB2_00006	0.77	-0.3
7,401	-		EFB2_00006	0.77	-0.8
7,401	-		EFB2_00006	0.77	+1.0
7,401	-		EFB2_00006	0.77	-3.5
7,401	-		EFB2_00006	0.77	-2.0
7,401	-		EFB2_00006	0.77	-0.6
7,401	-		EFB2_00006	0.77	+0.4
7,401	-		EFB2_00006	0.77	+0.3
7,401	-		EFB2_00006	0.77	-1.4
7,401	-		EFB2_00006	0.77	+1.3
7,401	-		EFB2_00006	0.77	+1.6
7,401	-		EFB2_00006	0.77	-0.6
7,401	-		EFB2_00006	0.77	+0.4
7,401	-		EFB2_00006	0.77	-0.3
7,401	-		EFB2_00006	0.77	-0.7
7,401	-		EFB2_00006	0.77	+0.5
7,401	-		EFB2_00006	0.77	-0.3
7,404	+		EFB2_00006	0.77	+0.0
7,404	+		EFB2_00006	0.77	-1.3
7,407	+		EFB2_00006	0.77	+0.3
7,408	-		EFB2_00006	0.77	+0.7
7,465	+		EFB2_00006	0.85	+0.3
7,465	+		EFB2_00006	0.85	-2.6
7,465	+		EFB2_00006	0.85	-1.0
7,497	+		EFB2_00006	0.88	+1.0
7,497	+		EFB2_00006	0.88	-1.8
7,497	+		EFB2_00006	0.88	+0.7
7,498	-		EFB2_00006	0.89	-2.6
7,498	-		EFB2_00006	0.89	-0.5
7,498	-		EFB2_00006	0.89	+0.3
7,566	+				-0.3
7,566	+				-1.6
7,566	+				-2.6
7,566	+				+1.7
7,567	-				+0.1
7,567	-				-0.1
7,567	-				-0.2
7,576	+				+0.0
7,576	+				+2.4
7,576	+				+0.5
7,576	+				-1.8
7,576	+				+0.6
7,576	+				+0.9
7,576	+				+1.0
7,576	+				-0.5
7,576	+				+0.2
7,576	+				-0.3
7,576	+				+1.4
7,576	+				+0.1
7,576	+				+0.8
7,576	+				-2.7
7,576	+				-0.8
7,576	+				-0.1
7,576	+				-2.1
7,576	+				+0.5
7,576	+				+0.1
7,576	+				-0.3
7,576	+				-0.1
7,576	+				-1.0
7,576	+				-0.3
7,576	+				+1.4
7,577	-				-1.3
7,577	-				-1.0
7,577	-				-2.0
7,577	-				-0.8
7,577	-				+0.4
7,577	-				+0.9
7,577	-				-0.5
7,577	-				+0.6
7,577	-				+0.5
7,577	-				-0.9
7,577	-				+1.9
7,577	-				+0.5
7,577	-				+1.0
7,577	-				-0.4
7,577	-				-0.5
7,577	-				+0.4
7,577	-				-0.4
7,577	-				+0.1
7,577	-				+0.2
7,577	-				+0.8
7,577	-				-0.0
7,577	-				+2.5
7,577	-				-1.7
7,577	-				+0.5
7,577	-				+1.4
7,577	-				-0.8
7,577	-				-1.3
7,577	-				-1.0
7,588	+				+0.8
7,588	+				-1.3
7,589	-				-2.3
7,589	-				+0.7
7,589	-				-0.7
7,635	+				-2.5
7,655	+				-0.6
7,655	+				+0.6
7,655	+				+0.1
7,655	+				+0.0
7,656	-				+0.4
7,656	-				-1.6
7,656	-				-1.6
7,682	+				+0.1
7,682	+				-0.1
7,682	+				+1.9
7,683	-				-1.5
7,683	-				+0.6
7,683	-				+0.7
7,683	-				-0.2
7,685	+				+0.7
7,685	+				-0.7
7,685	+				+0.7
7,685	+				-3.7
7,685	+				+0.1
7,685	+				+0.5
7,685	+				+1.0
7,685	+				-0.6
7,685	+				-1.4
7,685	+				-3.0
7,685	+				+1.4
7,685	+				+0.4
7,685	+				-0.9
7,685	+				-0.8
7,685	+				+1.6
7,685	+				-3.3
7,685	+				-0.3
7,685	+				+0.6
7,685	+				-0.3
7,685	+				+0.8
7,685	+				-0.8
7,685	+				+1.3
7,685	+				-0.3
7,685	+				-0.6
7,685	+				-0.1
7,685	+				+1.1
7,685	+				-0.1
7,685	+				+0.0
7,685	+				+0.7
7,685	+				+0.6
7,685	+				+1.0
7,685	+				+0.3
7,685	+				-0.1
7,685	+				+0.6
7,685	+				+1.7
7,685	+				+0.4
7,685	+				+0.4
7,685	+				-2.1
7,685	+				+0.1
7,685	+				-2.4
7,685	+				-1.0
7,685	+				-0.0
7,685	+				+1.3
7,685	+				+1.8
7,685	+				+0.7
7,685	+				-1.6
7,685	+				-1.6
7,686	-				-0.1
7,686	-				+1.0
7,686	-				+0.5
7,686	-				+0.1
7,686	-				+0.2
7,686	-				+0.6
7,686	-				+0.3
7,686	-				-1.0
7,686	-				+0.3
7,686	-				+1.3
7,686	-				+0.9
7,686	-				+0.2
7,686	-				+1.8
7,686	-				+1.2
7,686	-				+1.0
7,686	-				-0.8
7,686	-				+0.2
7,686	-				+0.3
7,686	-				+1.2
7,686	-				-0.2
7,686	-				+0.7
7,686	-				+0.4
7,686	-				+0.3
7,686	-				+1.0
7,686	-				-0.2
7,686	-				-0.7
7,686	-				-1.6
7,686	-				-0.1
7,686	-				-2.0
7,686	-				-0.0
7,686	-				-2.6
7,686	-				-0.8
7,686	-				+1.2
7,686	-				+0.4
7,686	-				+0.4
7,686	-				+0.4
7,686	-				-1.7
7,686	-				+0.2
7,686	-				-1.0
7,686	-				-1.8
7,686	-				-0.6
7,686	-				-1.8
7,686	-				-2.6
7,686	-				-3.6
7,686	-				-0.7
7,686	-				-0.9
7,686	-				+0.6
7,687	+				-0.3
7,687	+				-2.3
7,687	+				-2.7
7,687	+				+0.7
7,687	+				+0.1
7,687	+				+1.2
7,687	+				-1.4
7,687	+				-1.1
7,688	-				+0.7
7,696	+				+0.5
7,696	+				+0.1
7,696	+				-2.8
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8,850	+		EFB2_00008	0.41	+0.1
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9,213	+				-1.2
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9,267	+				-1.2
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9,268	-				+1.0
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9,268	-				-1.3
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