Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04226 and BACOVA_04227 are separated by 77 nucleotides BACOVA_04227 and BACOVA_04228 are separated by 19 nucleotides BACOVA_04228 and BACOVA_04229 are separated by 114 nucleotides BACOVA_04229 and BACOVA_04230 overlap by 8 nucleotides BACOVA_04230 and BACOVA_04231 are separated by 283 nucleotides
BACOVA_04226: BACOVA_04226 - gliding motility-associated protein GldE, at 105,365 to 106,720
_04226
BACOVA_04227: BACOVA_04227 - single-strand binding family protein, at 106,798 to 107,349
_04227
BACOVA_04228: BACOVA_04228 - A/G-specific adenine glycosylase, at 107,369 to 108,418
_04228
BACOVA_04229: BACOVA_04229 - hypothetical protein, at 108,533 to 108,637
_04229
BACOVA_04230: BACOVA_04230 - DNA-binding protein HU, at 108,630 to 108,905
_04230
BACOVA_04231: BACOVA_04231 - S1 RNA binding domain protein, at 109,189 to 110,763
_04231
Position (kb)
107
108
109 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 106.406 kb on - strand, within BACOVA_04226 at 106.506 kb on - strand, within BACOVA_04226 at 106.541 kb on - strand, within BACOVA_04226 at 106.750 kb on - strand at 106.788 kb on - strand at 106.796 kb on - strand at 106.832 kb on - strand at 107.335 kb on - strand at 107.341 kb on - strand at 107.364 kb on - strand at 107.364 kb on - strand at 107.373 kb on + strand at 107.384 kb on + strand at 107.424 kb on + strand at 107.425 kb on - strand at 107.425 kb on - strand at 107.486 kb on + strand, within BACOVA_04228 at 107.493 kb on - strand, within BACOVA_04228 at 107.500 kb on - strand, within BACOVA_04228 at 107.511 kb on + strand, within BACOVA_04228 at 107.512 kb on - strand, within BACOVA_04228 at 107.512 kb on - strand, within BACOVA_04228 at 107.544 kb on + strand, within BACOVA_04228 at 107.648 kb on + strand, within BACOVA_04228 at 107.648 kb on + strand, within BACOVA_04228 at 107.649 kb on - strand, within BACOVA_04228 at 107.680 kb on + strand, within BACOVA_04228 at 107.699 kb on - strand, within BACOVA_04228 at 107.702 kb on + strand, within BACOVA_04228 at 107.703 kb on - strand, within BACOVA_04228 at 107.704 kb on + strand, within BACOVA_04228 at 107.705 kb on - strand, within BACOVA_04228 at 107.730 kb on + strand, within BACOVA_04228 at 107.731 kb on - strand, within BACOVA_04228 at 107.863 kb on + strand, within BACOVA_04228 at 107.920 kb on + strand, within BACOVA_04228 at 107.987 kb on + strand, within BACOVA_04228 at 108.047 kb on - strand, within BACOVA_04228 at 108.052 kb on - strand, within BACOVA_04228 at 108.068 kb on - strand, within BACOVA_04228 at 108.184 kb on - strand, within BACOVA_04228 at 108.201 kb on + strand, within BACOVA_04228 at 108.242 kb on + strand, within BACOVA_04228 at 108.242 kb on + strand, within BACOVA_04228 at 108.262 kb on + strand, within BACOVA_04228 at 108.282 kb on + strand, within BACOVA_04228 at 108.282 kb on + strand, within BACOVA_04228 at 108.314 kb on - strand at 108.393 kb on - strand at 108.419 kb on - strand at 108.435 kb on + strand at 108.436 kb on - strand at 108.438 kb on + strand at 108.443 kb on - strand at 108.450 kb on - strand at 108.450 kb on - strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.457 kb on - strand at 108.457 kb on - strand at 108.494 kb on - strand at 108.510 kb on + strand at 108.510 kb on + strand at 108.543 kb on + strand at 108.543 kb on + strand at 108.919 kb on + strand at 108.919 kb on + strand at 109.001 kb on + strand at 109.079 kb on + strand at 109.079 kb on + strand at 109.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 106,406 - BACOVA_04226 0.77 -0.6 106,506 - BACOVA_04226 0.84 +0.2 106,541 - BACOVA_04226 0.87 -0.1 106,750 - +0.8 106,788 - +1.9 106,796 - -0.2 106,832 - +0.1 107,335 - -2.8 107,341 - -0.9 107,364 - +0.8 107,364 - +0.9 107,373 + +0.2 107,384 + -0.3 107,424 + +0.8 107,425 - -0.8 107,425 - -0.8 107,486 + BACOVA_04228 0.11 +0.4 107,493 - BACOVA_04228 0.12 +0.8 107,500 - BACOVA_04228 0.12 -0.4 107,511 + BACOVA_04228 0.14 -0.2 107,512 - BACOVA_04228 0.14 +0.3 107,512 - BACOVA_04228 0.14 +0.1 107,544 + BACOVA_04228 0.17 +0.7 107,648 + BACOVA_04228 0.27 +0.7 107,648 + BACOVA_04228 0.27 +0.8 107,649 - BACOVA_04228 0.27 +1.0 107,680 + BACOVA_04228 0.30 +0.2 107,699 - BACOVA_04228 0.31 +0.2 107,702 + BACOVA_04228 0.32 +1.2 107,703 - BACOVA_04228 0.32 +0.9 107,704 + BACOVA_04228 0.32 -0.1 107,705 - BACOVA_04228 0.32 -0.3 107,730 + BACOVA_04228 0.34 -1.2 107,731 - BACOVA_04228 0.34 +0.6 107,863 + BACOVA_04228 0.47 -2.4 107,920 + BACOVA_04228 0.52 +0.8 107,987 + BACOVA_04228 0.59 -1.1 108,047 - BACOVA_04228 0.65 -2.7 108,052 - BACOVA_04228 0.65 -0.6 108,068 - BACOVA_04228 0.67 -0.3 108,184 - BACOVA_04228 0.78 -0.4 108,201 + BACOVA_04228 0.79 +0.2 108,242 + BACOVA_04228 0.83 +0.4 108,242 + BACOVA_04228 0.83 -0.2 108,262 + BACOVA_04228 0.85 -0.1 108,282 + BACOVA_04228 0.87 +0.6 108,282 + BACOVA_04228 0.87 -1.4 108,314 - -1.1 108,393 - +0.1 108,419 - +0.3 108,435 + +0.6 108,436 - +0.5 108,438 + -0.7 108,443 - +0.1 108,450 - +0.1 108,450 - -0.4 108,456 + -0.9 108,456 + +0.8 108,457 - -0.3 108,457 - -1.2 108,494 - +0.2 108,510 + +0.5 108,510 + -0.5 108,543 + -0.6 108,543 + +1.1 108,919 + +1.3 108,919 + -0.2 109,001 + +2.0 109,079 + -0.6 109,079 + +1.0 109,151 + -0.0
Or see this region's nucleotide sequence