Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03443 and BACOVA_03444 are separated by 13 nucleotides BACOVA_03444 and BACOVA_03445 overlap by 17 nucleotides
BACOVA_03443: BACOVA_03443 - TonB-linked outer membrane protein, SusC/RagA family, at 179,875 to 183,096
_03443
BACOVA_03444: BACOVA_03444 - SusD family protein, at 183,110 to 184,966
_03444
BACOVA_03445: BACOVA_03445 - IPT/TIG domain protein, at 184,950 to 186,332
_03445
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 182.112 kb on + strand, within BACOVA_03443 at 182.115 kb on - strand, within BACOVA_03443 at 182.121 kb on + strand, within BACOVA_03443 at 182.139 kb on + strand, within BACOVA_03443 at 182.148 kb on + strand, within BACOVA_03443 at 182.174 kb on + strand, within BACOVA_03443 at 182.174 kb on + strand, within BACOVA_03443 at 182.181 kb on + strand, within BACOVA_03443 at 182.188 kb on - strand, within BACOVA_03443 at 182.281 kb on + strand, within BACOVA_03443 at 182.281 kb on + strand, within BACOVA_03443 at 182.281 kb on + strand, within BACOVA_03443 at 182.282 kb on - strand, within BACOVA_03443 at 182.282 kb on - strand, within BACOVA_03443 at 182.330 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.334 kb on + strand, within BACOVA_03443 at 182.335 kb on - strand, within BACOVA_03443 at 182.335 kb on - strand, within BACOVA_03443 at 182.368 kb on - strand, within BACOVA_03443 at 182.368 kb on - strand, within BACOVA_03443 at 182.375 kb on + strand, within BACOVA_03443 at 182.401 kb on - strand, within BACOVA_03443 at 182.428 kb on - strand, within BACOVA_03443 at 182.428 kb on - strand, within BACOVA_03443 at 182.536 kb on + strand, within BACOVA_03443 at 182.536 kb on + strand, within BACOVA_03443 at 182.537 kb on - strand, within BACOVA_03443 at 182.548 kb on - strand, within BACOVA_03443 at 182.550 kb on + strand, within BACOVA_03443 at 182.551 kb on - strand, within BACOVA_03443 at 182.556 kb on + strand, within BACOVA_03443 at 182.581 kb on - strand, within BACOVA_03443 at 182.581 kb on - strand, within BACOVA_03443 at 182.581 kb on - strand, within BACOVA_03443 at 182.582 kb on + strand, within BACOVA_03443 at 182.588 kb on + strand, within BACOVA_03443 at 182.588 kb on + strand, within BACOVA_03443 at 182.589 kb on - strand, within BACOVA_03443 at 182.590 kb on + strand, within BACOVA_03443 at 182.591 kb on - strand, within BACOVA_03443 at 182.634 kb on + strand, within BACOVA_03443 at 182.664 kb on - strand, within BACOVA_03443 at 182.722 kb on - strand, within BACOVA_03443 at 182.722 kb on - strand, within BACOVA_03443 at 182.737 kb on - strand, within BACOVA_03443 at 182.740 kb on + strand, within BACOVA_03443 at 182.741 kb on - strand, within BACOVA_03443 at 182.742 kb on + strand, within BACOVA_03443 at 182.743 kb on - strand, within BACOVA_03443 at 182.745 kb on - strand, within BACOVA_03443 at 182.782 kb on - strand at 182.846 kb on + strand at 182.868 kb on + strand at 182.868 kb on + strand at 182.869 kb on - strand at 182.904 kb on - strand at 182.920 kb on + strand at 182.931 kb on + strand at 182.943 kb on + strand at 182.956 kb on + strand at 182.957 kb on - strand at 183.019 kb on - strand at 183.028 kb on + strand at 183.028 kb on + strand at 183.029 kb on - strand at 183.064 kb on - strand at 183.068 kb on - strand at 183.070 kb on - strand at 183.079 kb on - strand at 183.094 kb on + strand at 183.099 kb on - strand at 183.121 kb on + strand at 183.125 kb on - strand at 183.126 kb on + strand at 183.129 kb on + strand at 183.130 kb on - strand at 183.193 kb on - strand at 183.193 kb on - strand at 183.229 kb on + strand at 183.232 kb on + strand at 183.236 kb on + strand at 183.237 kb on - strand at 183.264 kb on - strand at 183.269 kb on + strand at 183.269 kb on + strand at 183.270 kb on - strand at 183.270 kb on - strand at 183.272 kb on - strand at 183.337 kb on + strand, within BACOVA_03444 at 183.337 kb on + strand, within BACOVA_03444 at 183.338 kb on - strand, within BACOVA_03444 at 183.338 kb on - strand, within BACOVA_03444 at 183.341 kb on + strand, within BACOVA_03444 at 183.341 kb on + strand, within BACOVA_03444 at 183.341 kb on + strand, within BACOVA_03444 at 183.342 kb on - strand, within BACOVA_03444 at 183.342 kb on - strand, within BACOVA_03444 at 183.438 kb on - strand, within BACOVA_03444 at 183.461 kb on + strand, within BACOVA_03444 at 183.462 kb on - strand, within BACOVA_03444 at 183.561 kb on - strand, within BACOVA_03444 at 183.564 kb on - strand, within BACOVA_03444 at 183.567 kb on - strand, within BACOVA_03444 at 183.567 kb on - strand, within BACOVA_03444 at 183.578 kb on + strand, within BACOVA_03444 at 183.579 kb on - strand, within BACOVA_03444 at 183.619 kb on + strand, within BACOVA_03444 at 183.770 kb on + strand, within BACOVA_03444 at 183.808 kb on + strand, within BACOVA_03444 at 183.809 kb on - strand, within BACOVA_03444 at 183.809 kb on - strand, within BACOVA_03444 at 183.809 kb on - strand, within BACOVA_03444 at 183.821 kb on - strand, within BACOVA_03444 at 183.831 kb on - strand, within BACOVA_03444 at 183.921 kb on - strand, within BACOVA_03444 at 183.982 kb on - strand, within BACOVA_03444 at 184.030 kb on + strand, within BACOVA_03444 at 184.088 kb on + strand, within BACOVA_03444 at 184.088 kb on + strand, within BACOVA_03444 at 184.089 kb on - strand, within BACOVA_03444 at 184.091 kb on - strand, within BACOVA_03444 at 184.091 kb on - strand, within BACOVA_03444 at 184.091 kb on - strand, within BACOVA_03444 at 184.101 kb on - strand, within BACOVA_03444 at 184.101 kb on - strand, within BACOVA_03444 at 184.101 kb on - strand, within BACOVA_03444 at 184.101 kb on - strand, within BACOVA_03444 at 184.104 kb on + strand, within BACOVA_03444 at 184.104 kb on + strand, within BACOVA_03444 at 184.105 kb on - strand, within BACOVA_03444 at 184.109 kb on + strand, within BACOVA_03444 at 184.109 kb on + strand, within BACOVA_03444 at 184.110 kb on - strand, within BACOVA_03444 at 184.110 kb on - strand, within BACOVA_03444 at 184.123 kb on + strand, within BACOVA_03444 at 184.132 kb on + strand, within BACOVA_03444 at 184.162 kb on + strand, within BACOVA_03444 at 184.188 kb on - strand, within BACOVA_03444 at 184.193 kb on + strand, within BACOVA_03444 at 184.238 kb on - strand, within BACOVA_03444 at 184.299 kb on + strand, within BACOVA_03444 at 184.324 kb on + strand, within BACOVA_03444 at 184.394 kb on + strand, within BACOVA_03444 at 184.395 kb on - strand, within BACOVA_03444 at 184.395 kb on - strand, within BACOVA_03444 at 184.395 kb on - strand, within BACOVA_03444 at 184.512 kb on - strand, within BACOVA_03444 at 184.514 kb on + strand, within BACOVA_03444 at 184.514 kb on + strand, within BACOVA_03444 at 184.563 kb on + strand, within BACOVA_03444 at 184.564 kb on - strand, within BACOVA_03444 at 184.595 kb on - strand, within BACOVA_03444 at 184.595 kb on - strand, within BACOVA_03444 at 184.642 kb on + strand, within BACOVA_03444 at 184.664 kb on - strand, within BACOVA_03444 at 184.724 kb on + strand, within BACOVA_03444 at 184.724 kb on + strand, within BACOVA_03444 at 184.724 kb on + strand, within BACOVA_03444 at 184.730 kb on + strand, within BACOVA_03444 at 184.730 kb on + strand, within BACOVA_03444 at 184.730 kb on + strand, within BACOVA_03444 at 184.730 kb on + strand, within BACOVA_03444 at 184.738 kb on + strand, within BACOVA_03444 at 184.738 kb on + strand, within BACOVA_03444 at 184.739 kb on - strand, within BACOVA_03444 at 184.851 kb on - strand at 184.876 kb on + strand at 184.877 kb on - strand at 184.881 kb on + strand at 184.881 kb on + strand at 184.881 kb on + strand at 184.882 kb on - strand at 184.882 kb on - strand at 184.933 kb on + strand at 184.934 kb on - strand at 184.964 kb on + strand at 184.973 kb on + strand at 184.973 kb on + strand at 184.977 kb on - strand at 184.991 kb on + strand at 184.991 kb on + strand at 184.992 kb on - strand at 184.999 kb on + strand at 185.083 kb on + strand at 185.084 kb on - strand at 185.086 kb on - strand at 185.086 kb on - strand at 185.102 kb on + strand, within BACOVA_03445 at 185.102 kb on + strand, within BACOVA_03445 at 185.103 kb on - strand, within BACOVA_03445 at 185.128 kb on + strand, within BACOVA_03445 at 185.128 kb on + strand, within BACOVA_03445 at 185.193 kb on - strand, within BACOVA_03445 at 185.197 kb on - strand, within BACOVA_03445 at 185.231 kb on + strand, within BACOVA_03445 at 185.236 kb on - strand, within BACOVA_03445 at 185.261 kb on + strand, within BACOVA_03445 at 185.266 kb on + strand, within BACOVA_03445 at 185.267 kb on - strand, within BACOVA_03445 at 185.296 kb on + strand, within BACOVA_03445 at 185.319 kb on - strand, within BACOVA_03445 at 185.353 kb on + strand, within BACOVA_03445 at 185.354 kb on - strand, within BACOVA_03445 at 185.355 kb on + strand, within BACOVA_03445 at 185.396 kb on + strand, within BACOVA_03445 at 185.410 kb on - strand, within BACOVA_03445 at 185.446 kb on + strand, within BACOVA_03445 at 185.446 kb on + strand, within BACOVA_03445 at 185.455 kb on - strand, within BACOVA_03445 at 185.517 kb on + strand, within BACOVA_03445 at 185.517 kb on + strand, within BACOVA_03445 at 185.538 kb on - strand, within BACOVA_03445 at 185.643 kb on + strand, within BACOVA_03445 at 185.658 kb on + strand, within BACOVA_03445 at 185.661 kb on - strand, within BACOVA_03445 at 185.661 kb on - strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.718 kb on + strand, within BACOVA_03445 at 185.719 kb on - strand, within BACOVA_03445 at 185.763 kb on + strand, within BACOVA_03445 at 185.815 kb on - strand, within BACOVA_03445 at 185.816 kb on + strand, within BACOVA_03445 at 185.817 kb on - strand, within BACOVA_03445 at 185.826 kb on - strand, within BACOVA_03445 at 185.870 kb on + strand, within BACOVA_03445 at 185.914 kb on + strand, within BACOVA_03445
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 182,112 + BACOVA_03443 0.69 +1.7 182,115 - BACOVA_03443 0.70 -0.3 182,121 + BACOVA_03443 0.70 +0.5 182,139 + BACOVA_03443 0.70 -0.3 182,148 + BACOVA_03443 0.71 -0.2 182,174 + BACOVA_03443 0.71 -0.2 182,174 + BACOVA_03443 0.71 -0.0 182,181 + BACOVA_03443 0.72 +0.7 182,188 - BACOVA_03443 0.72 -0.2 182,281 + BACOVA_03443 0.75 +0.3 182,281 + BACOVA_03443 0.75 -2.5 182,281 + BACOVA_03443 0.75 +0.4 182,282 - BACOVA_03443 0.75 -0.4 182,282 - BACOVA_03443 0.75 +0.1 182,330 + BACOVA_03443 0.76 -0.7 182,334 + BACOVA_03443 0.76 +0.9 182,334 + BACOVA_03443 0.76 +0.9 182,334 + BACOVA_03443 0.76 -1.2 182,334 + BACOVA_03443 0.76 -0.2 182,334 + BACOVA_03443 0.76 +0.2 182,335 - BACOVA_03443 0.76 -3.0 182,335 - BACOVA_03443 0.76 +1.2 182,368 - BACOVA_03443 0.77 -0.6 182,368 - BACOVA_03443 0.77 +0.5 182,375 + BACOVA_03443 0.78 -1.0 182,401 - BACOVA_03443 0.78 -0.7 182,428 - BACOVA_03443 0.79 +0.3 182,428 - BACOVA_03443 0.79 +0.0 182,536 + BACOVA_03443 0.83 -0.5 182,536 + BACOVA_03443 0.83 -0.9 182,537 - BACOVA_03443 0.83 +0.7 182,548 - BACOVA_03443 0.83 +0.5 182,550 + BACOVA_03443 0.83 +0.1 182,551 - BACOVA_03443 0.83 +0.9 182,556 + BACOVA_03443 0.83 -0.2 182,581 - BACOVA_03443 0.84 -0.1 182,581 - BACOVA_03443 0.84 +1.5 182,581 - BACOVA_03443 0.84 +0.2 182,582 + BACOVA_03443 0.84 -0.1 182,588 + BACOVA_03443 0.84 -1.2 182,588 + BACOVA_03443 0.84 +1.9 182,589 - BACOVA_03443 0.84 -0.6 182,590 + BACOVA_03443 0.84 -0.7 182,591 - BACOVA_03443 0.84 -0.7 182,634 + BACOVA_03443 0.86 -0.5 182,664 - BACOVA_03443 0.87 -0.7 182,722 - BACOVA_03443 0.88 +0.0 182,722 - BACOVA_03443 0.88 -1.1 182,737 - BACOVA_03443 0.89 +0.3 182,740 + BACOVA_03443 0.89 +2.0 182,741 - BACOVA_03443 0.89 -1.4 182,742 + BACOVA_03443 0.89 +0.4 182,743 - BACOVA_03443 0.89 +0.3 182,745 - BACOVA_03443 0.89 -1.1 182,782 - -0.2 182,846 + -0.5 182,868 + +0.2 182,868 + +1.2 182,869 - +0.3 182,904 - +0.9 182,920 + +1.8 182,931 + -0.4 182,943 + +1.5 182,956 + +0.2 182,957 - -0.9 183,019 - -0.4 183,028 + +0.1 183,028 + -0.1 183,029 - +0.2 183,064 - +0.7 183,068 - -1.0 183,070 - -2.1 183,079 - +0.8 183,094 + +0.0 183,099 - -0.2 183,121 + +0.5 183,125 - -0.9 183,126 + -0.3 183,129 + -0.5 183,130 - -0.9 183,193 - +0.0 183,193 - +0.1 183,229 + -0.4 183,232 + -0.2 183,236 + +0.2 183,237 - +0.1 183,264 - -0.6 183,269 + -0.4 183,269 + +0.4 183,270 - +0.5 183,270 - +0.4 183,272 - -1.0 183,337 + BACOVA_03444 0.12 -0.5 183,337 + BACOVA_03444 0.12 -0.4 183,338 - BACOVA_03444 0.12 +0.9 183,338 - BACOVA_03444 0.12 +0.9 183,341 + BACOVA_03444 0.12 -1.9 183,341 + BACOVA_03444 0.12 -0.3 183,341 + BACOVA_03444 0.12 -0.5 183,342 - BACOVA_03444 0.12 +1.9 183,342 - BACOVA_03444 0.12 -0.3 183,438 - BACOVA_03444 0.18 -0.3 183,461 + BACOVA_03444 0.19 +0.4 183,462 - BACOVA_03444 0.19 +1.0 183,561 - BACOVA_03444 0.24 +0.9 183,564 - BACOVA_03444 0.24 +1.9 183,567 - BACOVA_03444 0.25 +0.1 183,567 - BACOVA_03444 0.25 +0.7 183,578 + BACOVA_03444 0.25 +0.7 183,579 - BACOVA_03444 0.25 -0.1 183,619 + BACOVA_03444 0.27 -0.8 183,770 + BACOVA_03444 0.36 -0.9 183,808 + BACOVA_03444 0.38 +0.4 183,809 - BACOVA_03444 0.38 +0.1 183,809 - BACOVA_03444 0.38 +0.7 183,809 - BACOVA_03444 0.38 -1.8 183,821 - BACOVA_03444 0.38 +0.1 183,831 - BACOVA_03444 0.39 -0.6 183,921 - BACOVA_03444 0.44 +0.2 183,982 - BACOVA_03444 0.47 -0.7 184,030 + BACOVA_03444 0.50 +0.4 184,088 + BACOVA_03444 0.53 +0.5 184,088 + BACOVA_03444 0.53 -0.0 184,089 - BACOVA_03444 0.53 +0.2 184,091 - BACOVA_03444 0.53 -0.5 184,091 - BACOVA_03444 0.53 -0.9 184,091 - BACOVA_03444 0.53 -0.2 184,101 - BACOVA_03444 0.53 -0.2 184,101 - BACOVA_03444 0.53 -0.3 184,101 - BACOVA_03444 0.53 +0.3 184,101 - BACOVA_03444 0.53 -2.9 184,104 + BACOVA_03444 0.54 +1.3 184,104 + BACOVA_03444 0.54 +1.2 184,105 - BACOVA_03444 0.54 -0.6 184,109 + BACOVA_03444 0.54 +0.7 184,109 + BACOVA_03444 0.54 -0.8 184,110 - BACOVA_03444 0.54 -0.3 184,110 - BACOVA_03444 0.54 +0.7 184,123 + BACOVA_03444 0.55 -0.9 184,132 + BACOVA_03444 0.55 -2.4 184,162 + BACOVA_03444 0.57 -0.1 184,188 - BACOVA_03444 0.58 +2.8 184,193 + BACOVA_03444 0.58 -0.8 184,238 - BACOVA_03444 0.61 -1.1 184,299 + BACOVA_03444 0.64 -0.9 184,324 + BACOVA_03444 0.65 +0.4 184,394 + BACOVA_03444 0.69 -0.2 184,395 - BACOVA_03444 0.69 +1.4 184,395 - BACOVA_03444 0.69 +0.3 184,395 - BACOVA_03444 0.69 +0.1 184,512 - BACOVA_03444 0.75 +0.7 184,514 + BACOVA_03444 0.76 -0.2 184,514 + BACOVA_03444 0.76 +0.9 184,563 + BACOVA_03444 0.78 +1.8 184,564 - BACOVA_03444 0.78 +0.1 184,595 - BACOVA_03444 0.80 +0.1 184,595 - BACOVA_03444 0.80 -0.9 184,642 + BACOVA_03444 0.82 -0.9 184,664 - BACOVA_03444 0.84 +1.7 184,724 + BACOVA_03444 0.87 +1.2 184,724 + BACOVA_03444 0.87 +0.4 184,724 + BACOVA_03444 0.87 -1.8 184,730 + BACOVA_03444 0.87 +0.5 184,730 + BACOVA_03444 0.87 +0.2 184,730 + BACOVA_03444 0.87 -0.8 184,730 + BACOVA_03444 0.87 -0.5 184,738 + BACOVA_03444 0.88 -0.5 184,738 + BACOVA_03444 0.88 +1.5 184,739 - BACOVA_03444 0.88 +0.1 184,851 - -0.5 184,876 + +0.3 184,877 - -1.2 184,881 + +0.9 184,881 + +0.7 184,881 + -1.5 184,882 - -2.2 184,882 - -2.0 184,933 + -1.3 184,934 - +0.2 184,964 + -1.3 184,973 + +0.1 184,973 + -0.4 184,977 - +0.3 184,991 + -0.2 184,991 + -0.1 184,992 - +1.0 184,999 + +0.6 185,083 + -0.9 185,084 - +0.6 185,086 - +0.5 185,086 - +0.5 185,102 + BACOVA_03445 0.11 -0.4 185,102 + BACOVA_03445 0.11 -0.5 185,103 - BACOVA_03445 0.11 +0.3 185,128 + BACOVA_03445 0.13 -0.5 185,128 + BACOVA_03445 0.13 -0.5 185,193 - BACOVA_03445 0.18 -0.1 185,197 - BACOVA_03445 0.18 -2.2 185,231 + BACOVA_03445 0.20 -0.8 185,236 - BACOVA_03445 0.21 +0.2 185,261 + BACOVA_03445 0.22 -1.7 185,266 + BACOVA_03445 0.23 +0.1 185,267 - BACOVA_03445 0.23 +1.4 185,296 + BACOVA_03445 0.25 -1.8 185,319 - BACOVA_03445 0.27 -1.5 185,353 + BACOVA_03445 0.29 +1.2 185,354 - BACOVA_03445 0.29 -0.4 185,355 + BACOVA_03445 0.29 -0.8 185,396 + BACOVA_03445 0.32 -1.1 185,410 - BACOVA_03445 0.33 +1.5 185,446 + BACOVA_03445 0.36 -0.2 185,446 + BACOVA_03445 0.36 -0.9 185,455 - BACOVA_03445 0.37 +1.5 185,517 + BACOVA_03445 0.41 +0.2 185,517 + BACOVA_03445 0.41 +1.5 185,538 - BACOVA_03445 0.43 +0.9 185,643 + BACOVA_03445 0.50 -2.4 185,658 + BACOVA_03445 0.51 +0.5 185,661 - BACOVA_03445 0.51 -0.9 185,661 - BACOVA_03445 0.51 -0.1 185,718 + BACOVA_03445 0.56 +0.2 185,718 + BACOVA_03445 0.56 +0.7 185,718 + BACOVA_03445 0.56 -1.4 185,719 - BACOVA_03445 0.56 -1.2 185,763 + BACOVA_03445 0.59 -0.5 185,815 - BACOVA_03445 0.63 -1.0 185,816 + BACOVA_03445 0.63 -0.1 185,817 - BACOVA_03445 0.63 +0.6 185,826 - BACOVA_03445 0.63 +0.1 185,870 + BACOVA_03445 0.67 +0.8 185,914 + BACOVA_03445 0.70 +0.9
Or see this region's nucleotide sequence