Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03266

Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03265 and BACOVA_03266 are separated by 275 nucleotidesBACOVA_03266 and BACOVA_03267 are separated by 287 nucleotides BACOVA_03265: BACOVA_03265 - TonB-dependent receptor, at 360,364 to 362,247 _03265 BACOVA_03266: BACOVA_03266 - hypothetical protein, at 362,523 to 362,627 _03266 BACOVA_03267: BACOVA_03267 - TrkA C-terminal domain protein, at 362,915 to 364,600 _03267 Position (kb) 362 363Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 361.605 kb on - strand, within BACOVA_03265at 361.607 kb on - strand, within BACOVA_03265at 361.610 kb on + strand, within BACOVA_03265at 361.610 kb on + strand, within BACOVA_03265at 361.669 kb on + strand, within BACOVA_03265at 361.678 kb on + strand, within BACOVA_03265at 361.678 kb on + strand, within BACOVA_03265at 361.679 kb on - strand, within BACOVA_03265at 361.731 kb on - strand, within BACOVA_03265at 361.741 kb on - strand, within BACOVA_03265at 361.755 kb on + strand, within BACOVA_03265at 361.755 kb on + strand, within BACOVA_03265at 361.757 kb on + strand, within BACOVA_03265at 361.757 kb on + strand, within BACOVA_03265at 361.757 kb on + strand, within BACOVA_03265at 361.757 kb on + strand, within BACOVA_03265at 361.757 kb on + strand, within BACOVA_03265at 361.758 kb on - strand, within BACOVA_03265at 361.761 kb on + strand, within BACOVA_03265at 361.761 kb on + strand, within BACOVA_03265at 361.761 kb on + strand, within BACOVA_03265at 361.762 kb on - strand, within BACOVA_03265at 361.762 kb on - strand, within BACOVA_03265at 361.762 kb on - strand, within BACOVA_03265at 361.764 kb on - strand, within BACOVA_03265at 361.816 kb on + strand, within BACOVA_03265at 361.911 kb on + strand, within BACOVA_03265at 361.911 kb on + strand, within BACOVA_03265at 361.912 kb on - strand, within BACOVA_03265at 361.913 kb on + strand, within BACOVA_03265at 361.913 kb on + strand, within BACOVA_03265at 361.914 kb on - strand, within BACOVA_03265at 361.915 kb on + strand, within BACOVA_03265at 361.916 kb on - strand, within BACOVA_03265at 361.916 kb on - strand, within BACOVA_03265at 361.934 kb on + strand, within BACOVA_03265at 361.972 kb on + strand, within BACOVA_03265at 361.975 kb on - strand, within BACOVA_03265at 361.976 kb on + strand, within BACOVA_03265at 361.976 kb on + strand, within BACOVA_03265at 361.977 kb on - strand, within BACOVA_03265at 361.977 kb on - strand, within BACOVA_03265at 361.977 kb on - strand, within BACOVA_03265at 362.056 kb on - strand, within BACOVA_03265at 362.063 kb on + strandat 362.063 kb on + strandat 362.064 kb on - strandat 362.064 kb on - strandat 362.064 kb on - strandat 362.091 kb on + strandat 362.091 kb on + strandat 362.099 kb on - strandat 362.101 kb on - strandat 362.124 kb on + strandat 362.125 kb on - strandat 362.140 kb on + strandat 362.147 kb on - strandat 362.165 kb on - strandat 362.192 kb on - strandat 362.224 kb on + strandat 362.263 kb on - strandat 362.266 kb on - strandat 362.290 kb on - strandat 362.371 kb on + strandat 362.397 kb on + strandat 362.402 kb on + strandat 362.403 kb on - strandat 362.403 kb on - strandat 362.419 kb on - strandat 362.441 kb on + strandat 362.495 kb on + strandat 362.496 kb on - strandat 362.496 kb on - strandat 362.496 kb on - strandat 362.496 kb on - strandat 362.496 kb on - strandat 362.497 kb on + strandat 362.498 kb on - strandat 362.498 kb on - strandat 362.498 kb on - strandat 362.501 kb on + strandat 362.501 kb on + strandat 362.501 kb on + strandat 362.501 kb on + strandat 362.501 kb on + strandat 362.502 kb on - strandat 362.513 kb on + strandat 362.520 kb on + strandat 362.625 kb on + strandat 362.626 kb on - strandat 362.631 kb on - strandat 362.668 kb on + strandat 362.686 kb on - strandat 362.844 kb on - strandat 362.878 kb on - strandat 362.880 kb on + strandat 362.880 kb on + strandat 362.881 kb on - strandat 362.905 kb on + strandat 362.905 kb on + strandat 362.906 kb on - strandat 362.909 kb on - strandat 362.909 kb on - strandat 362.912 kb on - strandat 362.917 kb on - strandat 362.937 kb on - strandat 363.056 kb on - strandat 363.056 kb on - strandat 363.087 kb on + strand, within BACOVA_03267at 363.102 kb on + strand, within BACOVA_03267at 363.106 kb on - strand, within BACOVA_03267at 363.113 kb on + strand, within BACOVA_03267at 363.114 kb on - strand, within BACOVA_03267at 363.152 kb on + strand, within BACOVA_03267at 363.170 kb on + strand, within BACOVA_03267at 363.170 kb on + strand, within BACOVA_03267at 363.170 kb on + strand, within BACOVA_03267at 363.171 kb on - strand, within BACOVA_03267at 363.171 kb on - strand, within BACOVA_03267at 363.171 kb on - strand, within BACOVA_03267at 363.171 kb on - strand, within BACOVA_03267at 363.171 kb on - strand, within BACOVA_03267at 363.171 kb on - strand, within BACOVA_03267at 363.171 kb on - strand, within BACOVA_03267at 363.172 kb on + strand, within BACOVA_03267at 363.172 kb on + strand, within BACOVA_03267at 363.173 kb on - strand, within BACOVA_03267at 363.173 kb on - strand, within BACOVA_03267at 363.173 kb on - strand, within BACOVA_03267at 363.200 kb on + strand, within BACOVA_03267at 363.227 kb on + strand, within BACOVA_03267at 363.227 kb on + strand, within BACOVA_03267at 363.289 kb on + strand, within BACOVA_03267at 363.291 kb on + strand, within BACOVA_03267at 363.295 kb on + strand, within BACOVA_03267at 363.295 kb on + strand, within BACOVA_03267at 363.296 kb on - strand, within BACOVA_03267at 363.335 kb on - strand, within BACOVA_03267at 363.335 kb on - strand, within BACOVA_03267at 363.418 kb on + strand, within BACOVA_03267at 363.418 kb on + strand, within BACOVA_03267at 363.419 kb on - strand, within BACOVA_03267at 363.425 kb on + strand, within BACOVA_03267at 363.426 kb on - strand, within BACOVA_03267at 363.426 kb on - strand, within BACOVA_03267at 363.433 kb on + strand, within BACOVA_03267at 363.437 kb on + strand, within BACOVA_03267at 363.437 kb on + strand, within BACOVA_03267at 363.438 kb on - strand, within BACOVA_03267at 363.439 kb on + strand, within BACOVA_03267at 363.439 kb on + strand, within BACOVA_03267at 363.445 kb on + strand, within BACOVA_03267at 363.468 kb on - strand, within BACOVA_03267at 363.492 kb on - strand, within BACOVA_03267at 363.527 kb on + strand, within BACOVA_03267at 363.561 kb on - strand, within BACOVA_03267at 363.561 kb on - strand, within BACOVA_03267at 363.584 kb on + strand, within BACOVA_03267

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Per-strain Table

Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C)
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361,605 - BACOVA_03265 0.66 -2.3
361,607 - BACOVA_03265 0.66 +1.2
361,610 + BACOVA_03265 0.66 +0.5
361,610 + BACOVA_03265 0.66 -0.1
361,669 + BACOVA_03265 0.69 +0.2
361,678 + BACOVA_03265 0.70 -0.7
361,678 + BACOVA_03265 0.70 -1.8
361,679 - BACOVA_03265 0.70 +0.5
361,731 - BACOVA_03265 0.73 -0.9
361,741 - BACOVA_03265 0.73 +0.2
361,755 + BACOVA_03265 0.74 -0.9
361,755 + BACOVA_03265 0.74 -0.4
361,757 + BACOVA_03265 0.74 +1.0
361,757 + BACOVA_03265 0.74 -0.9
361,757 + BACOVA_03265 0.74 -0.7
361,757 + BACOVA_03265 0.74 -2.1
361,757 + BACOVA_03265 0.74 -1.5
361,758 - BACOVA_03265 0.74 -1.1
361,761 + BACOVA_03265 0.74 -1.6
361,761 + BACOVA_03265 0.74 -1.1
361,761 + BACOVA_03265 0.74 -1.1
361,762 - BACOVA_03265 0.74 -1.2
361,762 - BACOVA_03265 0.74 -1.0
361,762 - BACOVA_03265 0.74 -0.4
361,764 - BACOVA_03265 0.74 +1.4
361,816 + BACOVA_03265 0.77 -0.9
361,911 + BACOVA_03265 0.82 -0.3
361,911 + BACOVA_03265 0.82 +0.4
361,912 - BACOVA_03265 0.82 +0.7
361,913 + BACOVA_03265 0.82 -0.1
361,913 + BACOVA_03265 0.82 -1.1
361,914 - BACOVA_03265 0.82 -0.8
361,915 + BACOVA_03265 0.82 -0.7
361,916 - BACOVA_03265 0.82 -0.5
361,916 - BACOVA_03265 0.82 +0.6
361,934 + BACOVA_03265 0.83 -0.7
361,972 + BACOVA_03265 0.85 +2.3
361,975 - BACOVA_03265 0.86 -0.4
361,976 + BACOVA_03265 0.86 +1.1
361,976 + BACOVA_03265 0.86 -1.2
361,977 - BACOVA_03265 0.86 -0.2
361,977 - BACOVA_03265 0.86 -0.3
361,977 - BACOVA_03265 0.86 +0.1
362,056 - BACOVA_03265 0.90 -0.4
362,063 + -1.5
362,063 + +0.7
362,064 - -1.9
362,064 - +1.0
362,064 - -1.0
362,091 + +1.9
362,091 + -0.4
362,099 - -2.8
362,101 - -0.3
362,124 + -0.4
362,125 - -1.5
362,140 + +2.7
362,147 - +0.6
362,165 - -1.6
362,192 - +0.6
362,224 + -1.3
362,263 - -0.4
362,266 - -2.2
362,290 - -0.3
362,371 + -0.4
362,397 + +1.0
362,402 + +0.1
362,403 - -0.4
362,403 - +0.8
362,419 - +0.0
362,441 + -0.6
362,495 + -0.4
362,496 - -2.8
362,496 - -1.0
362,496 - -1.6
362,496 - -0.6
362,496 - +1.1
362,497 + -0.6
362,498 - -0.7
362,498 - -0.1
362,498 - -0.3
362,501 + -2.1
362,501 + -2.3
362,501 + -1.4
362,501 + -0.5
362,501 + -0.1
362,502 - +1.5
362,513 + -0.8
362,520 + +0.1
362,625 + -1.7
362,626 - -0.0
362,631 - -3.1
362,668 + -1.1
362,686 - +0.5
362,844 - -0.1
362,878 - -0.1
362,880 + +1.0
362,880 + +0.3
362,881 - -2.5
362,905 + +0.9
362,905 + -0.9
362,906 - +0.9
362,909 - -0.6
362,909 - +1.3
362,912 - -0.1
362,917 - +0.2
362,937 - +0.7
363,056 - -0.1
363,056 - +0.4
363,087 + BACOVA_03267 0.10 +0.2
363,102 + BACOVA_03267 0.11 +0.0
363,106 - BACOVA_03267 0.11 -0.1
363,113 + BACOVA_03267 0.12 -1.6
363,114 - BACOVA_03267 0.12 +0.5
363,152 + BACOVA_03267 0.14 +0.0
363,170 + BACOVA_03267 0.15 -0.2
363,170 + BACOVA_03267 0.15 -0.4
363,170 + BACOVA_03267 0.15 -1.2
363,171 - BACOVA_03267 0.15 -0.1
363,171 - BACOVA_03267 0.15 -1.8
363,171 - BACOVA_03267 0.15 -1.2
363,171 - BACOVA_03267 0.15 +0.2
363,171 - BACOVA_03267 0.15 +0.7
363,171 - BACOVA_03267 0.15 +0.7
363,171 - BACOVA_03267 0.15 -0.4
363,172 + BACOVA_03267 0.15 -0.5
363,172 + BACOVA_03267 0.15 +0.1
363,173 - BACOVA_03267 0.15 -0.8
363,173 - BACOVA_03267 0.15 -0.5
363,173 - BACOVA_03267 0.15 +0.7
363,200 + BACOVA_03267 0.17 -0.6
363,227 + BACOVA_03267 0.19 +0.8
363,227 + BACOVA_03267 0.19 -1.4
363,289 + BACOVA_03267 0.22 +0.2
363,291 + BACOVA_03267 0.22 +0.3
363,295 + BACOVA_03267 0.23 -0.5
363,295 + BACOVA_03267 0.23 -0.1
363,296 - BACOVA_03267 0.23 -1.1
363,335 - BACOVA_03267 0.25 +0.4
363,335 - BACOVA_03267 0.25 -0.1
363,418 + BACOVA_03267 0.30 -0.0
363,418 + BACOVA_03267 0.30 +1.0
363,419 - BACOVA_03267 0.30 -0.7
363,425 + BACOVA_03267 0.30 -0.6
363,426 - BACOVA_03267 0.30 -1.2
363,426 - BACOVA_03267 0.30 +0.1
363,433 + BACOVA_03267 0.31 +0.5
363,437 + BACOVA_03267 0.31 -0.9
363,437 + BACOVA_03267 0.31 -0.4
363,438 - BACOVA_03267 0.31 -0.3
363,439 + BACOVA_03267 0.31 +0.1
363,439 + BACOVA_03267 0.31 -0.2
363,445 + BACOVA_03267 0.31 -0.3
363,468 - BACOVA_03267 0.33 -0.2
363,492 - BACOVA_03267 0.34 -0.1
363,527 + BACOVA_03267 0.36 -2.4
363,561 - BACOVA_03267 0.38 +2.5
363,561 - BACOVA_03267 0.38 -0.8
363,584 + BACOVA_03267 0.40 -4.0

Or see this region's nucleotide sequence