Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03242 and BACOVA_03243 are separated by 331 nucleotides BACOVA_03243 and BACOVA_03244 overlap by 4 nucleotides BACOVA_03244 and BACOVA_03245 are separated by 20 nucleotides BACOVA_03245 and BACOVA_03246 are separated by 35 nucleotides BACOVA_03246 and BACOVA_03247 are separated by 341 nucleotides
BACOVA_03242: BACOVA_03242 - putative DNA-binding protein, at 334,515 to 334,994
_03242
BACOVA_03243: BACOVA_03243 - hypothetical protein, at 335,326 to 335,592
_03243
BACOVA_03244: BACOVA_03244 - hypothetical protein, at 335,589 to 335,723
_03244
BACOVA_03245: BACOVA_03245 - hypothetical protein, at 335,744 to 335,947
_03245
BACOVA_03246: BACOVA_03246 - putative DNA-binding protein, at 335,983 to 336,582
_03246
BACOVA_03247: BACOVA_03247 - hypothetical protein, at 336,924 to 337,028
_03247
Position (kb) 335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.830 kb on + strand, within BACOVA_03242 at 334.869 kb on - strand, within BACOVA_03242 at 334.927 kb on - strand, within BACOVA_03242 at 334.931 kb on - strand, within BACOVA_03242 at 334.931 kb on - strand, within BACOVA_03242 at 334.982 kb on - strand at 334.985 kb on + strand at 334.986 kb on - strand at 335.028 kb on + strand at 335.061 kb on - strand at 335.063 kb on + strand at 335.064 kb on - strand at 335.098 kb on + strand at 335.098 kb on + strand at 335.098 kb on + strand at 335.105 kb on - strand at 335.109 kb on - strand at 335.162 kb on + strand at 335.163 kb on - strand at 335.164 kb on + strand at 335.193 kb on + strand at 335.193 kb on + strand at 335.194 kb on - strand at 335.244 kb on - strand at 335.279 kb on - strand at 335.288 kb on - strand at 335.293 kb on + strand at 335.294 kb on - strand at 335.294 kb on - strand at 335.298 kb on - strand at 335.300 kb on + strand at 335.310 kb on + strand at 335.314 kb on - strand at 335.314 kb on - strand at 335.314 kb on - strand at 335.320 kb on - strand at 335.321 kb on + strand at 335.321 kb on + strand at 335.326 kb on - strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.331 kb on - strand at 335.430 kb on + strand, within BACOVA_03243 at 335.431 kb on - strand, within BACOVA_03243 at 335.437 kb on + strand, within BACOVA_03243 at 335.440 kb on - strand, within BACOVA_03243 at 335.464 kb on - strand, within BACOVA_03243 at 335.480 kb on + strand, within BACOVA_03243 at 335.480 kb on + strand, within BACOVA_03243 at 335.480 kb on + strand, within BACOVA_03243 at 335.518 kb on + strand, within BACOVA_03243 at 335.518 kb on + strand, within BACOVA_03243 at 335.518 kb on + strand, within BACOVA_03243 at 335.530 kb on - strand, within BACOVA_03243 at 335.537 kb on + strand, within BACOVA_03243 at 335.538 kb on - strand, within BACOVA_03243 at 335.567 kb on - strand at 335.589 kb on - strand at 335.598 kb on + strand at 335.598 kb on + strand at 335.607 kb on - strand, within BACOVA_03244 at 335.607 kb on - strand, within BACOVA_03244 at 335.610 kb on - strand, within BACOVA_03244 at 335.620 kb on + strand, within BACOVA_03244 at 335.621 kb on - strand, within BACOVA_03244 at 335.717 kb on + strand at 335.718 kb on - strand at 335.721 kb on + strand at 335.722 kb on - strand at 335.722 kb on - strand at 335.722 kb on - strand at 335.744 kb on - strand at 335.748 kb on + strand at 335.749 kb on - strand at 335.754 kb on + strand at 335.755 kb on - strand at 335.755 kb on - strand at 335.755 kb on - strand at 335.755 kb on - strand at 335.758 kb on - strand at 335.758 kb on - strand at 335.760 kb on + strand at 335.771 kb on + strand, within BACOVA_03245 at 335.771 kb on + strand, within BACOVA_03245 at 335.810 kb on - strand, within BACOVA_03245 at 335.840 kb on + strand, within BACOVA_03245 at 335.840 kb on + strand, within BACOVA_03245 at 335.842 kb on + strand, within BACOVA_03245 at 335.843 kb on - strand, within BACOVA_03245 at 335.843 kb on - strand, within BACOVA_03245 at 335.845 kb on + strand, within BACOVA_03245 at 335.845 kb on + strand, within BACOVA_03245 at 335.845 kb on + strand, within BACOVA_03245 at 335.845 kb on + strand, within BACOVA_03245 at 335.846 kb on - strand, within BACOVA_03245 at 335.846 kb on - strand, within BACOVA_03245 at 335.848 kb on + strand, within BACOVA_03245 at 335.853 kb on + strand, within BACOVA_03245 at 335.853 kb on + strand, within BACOVA_03245 at 335.853 kb on + strand, within BACOVA_03245 at 335.854 kb on - strand, within BACOVA_03245 at 335.854 kb on - strand, within BACOVA_03245 at 335.855 kb on + strand, within BACOVA_03245 at 335.855 kb on + strand, within BACOVA_03245 at 335.856 kb on - strand, within BACOVA_03245 at 335.889 kb on + strand, within BACOVA_03245 at 335.906 kb on + strand, within BACOVA_03245 at 335.907 kb on - strand, within BACOVA_03245 at 335.945 kb on + strand at 335.946 kb on - strand at 335.963 kb on + strand at 335.964 kb on - strand at 335.985 kb on - strand at 335.986 kb on + strand at 335.987 kb on - strand at 335.987 kb on - strand at 335.992 kb on + strand at 335.992 kb on + strand at 335.994 kb on + strand at 335.994 kb on + strand at 335.995 kb on - strand at 335.997 kb on - strand at 335.997 kb on - strand at 335.998 kb on + strand at 335.999 kb on - strand at 336.042 kb on + strand at 336.043 kb on - strand, within BACOVA_03246 at 336.099 kb on + strand, within BACOVA_03246 at 336.099 kb on + strand, within BACOVA_03246 at 336.121 kb on + strand, within BACOVA_03246 at 336.137 kb on + strand, within BACOVA_03246 at 336.138 kb on - strand, within BACOVA_03246 at 336.175 kb on - strand, within BACOVA_03246 at 336.177 kb on + strand, within BACOVA_03246 at 336.187 kb on - strand, within BACOVA_03246 at 336.198 kb on + strand, within BACOVA_03246 at 336.232 kb on + strand, within BACOVA_03246 at 336.331 kb on + strand, within BACOVA_03246 at 336.332 kb on - strand, within BACOVA_03246 at 336.340 kb on - strand, within BACOVA_03246 at 336.434 kb on - strand, within BACOVA_03246 at 336.491 kb on - strand, within BACOVA_03246 at 336.510 kb on + strand, within BACOVA_03246 at 336.520 kb on + strand, within BACOVA_03246 at 336.521 kb on - strand, within BACOVA_03246 at 336.521 kb on - strand, within BACOVA_03246 at 336.549 kb on + strand at 336.569 kb on + strand at 336.570 kb on - strand at 336.571 kb on + strand at 336.572 kb on - strand at 336.572 kb on - strand at 336.587 kb on + strand at 336.603 kb on + strand at 336.603 kb on + strand at 336.606 kb on - strand at 336.625 kb on + strand at 336.626 kb on - strand at 336.626 kb on - strand at 336.641 kb on + strand at 336.663 kb on + strand at 336.679 kb on - strand at 336.727 kb on + strand at 336.756 kb on + strand at 336.757 kb on - strand at 336.762 kb on + strand at 336.763 kb on - strand at 336.775 kb on + strand at 336.775 kb on + strand at 336.783 kb on + strand at 336.784 kb on - strand at 336.793 kb on + strand at 336.793 kb on + strand at 336.794 kb on - strand at 336.811 kb on + strand at 336.811 kb on + strand at 336.811 kb on + strand at 336.815 kb on + strand at 336.816 kb on - strand at 336.819 kb on + strand at 336.819 kb on + strand at 336.819 kb on + strand at 336.819 kb on + strand at 336.820 kb on - strand at 336.827 kb on - strand at 336.830 kb on + strand at 336.865 kb on + strand at 336.882 kb on - strand at 336.896 kb on - strand at 336.896 kb on - strand at 336.920 kb on + strand at 336.921 kb on - strand at 336.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 334,830 + BACOVA_03242 0.66 +1.0 334,869 - BACOVA_03242 0.74 -0.7 334,927 - BACOVA_03242 0.86 +1.0 334,931 - BACOVA_03242 0.87 +1.5 334,931 - BACOVA_03242 0.87 -1.9 334,982 - +0.2 334,985 + -0.5 334,986 - +0.4 335,028 + +0.1 335,061 - -1.1 335,063 + -0.4 335,064 - +1.0 335,098 + -0.1 335,098 + -0.3 335,098 + +1.7 335,105 - -0.5 335,109 - +0.6 335,162 + -0.1 335,163 - -0.3 335,164 + +0.3 335,193 + -0.2 335,193 + +0.1 335,194 - -0.2 335,244 - +0.5 335,279 - +0.4 335,288 - +0.7 335,293 + -1.0 335,294 - +0.9 335,294 - -1.1 335,298 - +0.2 335,300 + +1.0 335,310 + -0.1 335,314 - +0.3 335,314 - +0.3 335,314 - +0.5 335,320 - -1.2 335,321 + -1.4 335,321 + -0.1 335,326 - -0.8 335,330 + -0.2 335,330 + +0.3 335,330 + -0.5 335,330 + -0.5 335,330 + -0.1 335,330 + -0.9 335,331 - +0.4 335,430 + BACOVA_03243 0.39 +0.7 335,431 - BACOVA_03243 0.39 +0.1 335,437 + BACOVA_03243 0.42 -0.1 335,440 - BACOVA_03243 0.43 -0.9 335,464 - BACOVA_03243 0.52 -0.4 335,480 + BACOVA_03243 0.58 -0.0 335,480 + BACOVA_03243 0.58 +0.5 335,480 + BACOVA_03243 0.58 -0.5 335,518 + BACOVA_03243 0.72 +0.1 335,518 + BACOVA_03243 0.72 +0.0 335,518 + BACOVA_03243 0.72 -0.9 335,530 - BACOVA_03243 0.76 +0.7 335,537 + BACOVA_03243 0.79 -0.7 335,538 - BACOVA_03243 0.79 -1.9 335,567 - -0.5 335,589 - -1.2 335,598 + -0.3 335,598 + +1.1 335,607 - BACOVA_03244 0.13 -0.1 335,607 - BACOVA_03244 0.13 +0.6 335,610 - BACOVA_03244 0.16 -1.2 335,620 + BACOVA_03244 0.23 +0.6 335,621 - BACOVA_03244 0.24 +2.1 335,717 + +0.3 335,718 - +0.3 335,721 + -0.1 335,722 - -0.5 335,722 - -2.9 335,722 - +0.3 335,744 - -0.5 335,748 + -0.3 335,749 - +0.4 335,754 + -0.6 335,755 - +1.2 335,755 - +0.7 335,755 - +0.9 335,755 - -0.4 335,758 - -0.3 335,758 - -0.9 335,760 + +0.5 335,771 + BACOVA_03245 0.13 -1.9 335,771 + BACOVA_03245 0.13 -0.7 335,810 - BACOVA_03245 0.32 +1.0 335,840 + BACOVA_03245 0.47 +0.1 335,840 + BACOVA_03245 0.47 -2.3 335,842 + BACOVA_03245 0.48 -1.7 335,843 - BACOVA_03245 0.49 -2.0 335,843 - BACOVA_03245 0.49 -1.0 335,845 + BACOVA_03245 0.50 +1.3 335,845 + BACOVA_03245 0.50 -0.6 335,845 + BACOVA_03245 0.50 -1.5 335,845 + BACOVA_03245 0.50 +0.9 335,846 - BACOVA_03245 0.50 -0.5 335,846 - BACOVA_03245 0.50 +0.0 335,848 + BACOVA_03245 0.51 -0.7 335,853 + BACOVA_03245 0.53 -0.3 335,853 + BACOVA_03245 0.53 -0.3 335,853 + BACOVA_03245 0.53 +1.4 335,854 - BACOVA_03245 0.54 -0.2 335,854 - BACOVA_03245 0.54 +1.1 335,855 + BACOVA_03245 0.54 -0.5 335,855 + BACOVA_03245 0.54 -0.5 335,856 - BACOVA_03245 0.55 -0.2 335,889 + BACOVA_03245 0.71 +0.2 335,906 + BACOVA_03245 0.79 +0.5 335,907 - BACOVA_03245 0.80 -0.1 335,945 + -0.7 335,946 - -0.4 335,963 + -0.4 335,964 - -0.3 335,985 - +1.2 335,986 + -1.4 335,987 - -2.2 335,987 - +0.1 335,992 + +0.0 335,992 + -0.4 335,994 + -1.3 335,994 + +1.5 335,995 - -0.1 335,997 - -1.9 335,997 - -0.7 335,998 + -1.0 335,999 - +0.0 336,042 + +0.5 336,043 - BACOVA_03246 0.10 +0.4 336,099 + BACOVA_03246 0.19 -0.4 336,099 + BACOVA_03246 0.19 -0.5 336,121 + BACOVA_03246 0.23 +2.2 336,137 + BACOVA_03246 0.26 -0.5 336,138 - BACOVA_03246 0.26 +0.2 336,175 - BACOVA_03246 0.32 +0.3 336,177 + BACOVA_03246 0.32 -0.1 336,187 - BACOVA_03246 0.34 -0.9 336,198 + BACOVA_03246 0.36 -0.3 336,232 + BACOVA_03246 0.41 +0.4 336,331 + BACOVA_03246 0.58 -1.5 336,332 - BACOVA_03246 0.58 -0.1 336,340 - BACOVA_03246 0.59 +0.7 336,434 - BACOVA_03246 0.75 -1.0 336,491 - BACOVA_03246 0.85 +0.0 336,510 + BACOVA_03246 0.88 +0.8 336,520 + BACOVA_03246 0.90 +0.7 336,521 - BACOVA_03246 0.90 +0.5 336,521 - BACOVA_03246 0.90 +1.5 336,549 + -0.5 336,569 + -0.4 336,570 - -1.5 336,571 + +0.4 336,572 - -1.1 336,572 - -0.1 336,587 + -0.6 336,603 + -1.9 336,603 + +0.1 336,606 - +0.2 336,625 + +0.8 336,626 - -1.2 336,626 - -0.1 336,641 + +0.4 336,663 + -1.0 336,679 - -1.9 336,727 + -1.2 336,756 + -2.4 336,757 - -1.0 336,762 + +1.1 336,763 - +0.7 336,775 + +0.5 336,775 + -0.9 336,783 + -0.2 336,784 - +0.4 336,793 + -0.1 336,793 + +1.0 336,794 - -0.2 336,811 + -0.2 336,811 + -1.2 336,811 + -0.1 336,815 + -0.1 336,816 - +0.3 336,819 + +0.0 336,819 + -1.4 336,819 + +1.0 336,819 + +0.2 336,820 - -0.8 336,827 - +0.3 336,830 + -0.1 336,865 + +0.2 336,882 - +0.3 336,896 - -0.2 336,896 - -1.0 336,920 + -0.2 336,921 - -1.2 336,921 - +0.0
Or see this region's nucleotide sequence