Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03241

Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03240 and BACOVA_03241 are separated by 23 nucleotidesBACOVA_03241 and BACOVA_03242 are separated by 142 nucleotidesBACOVA_03242 and BACOVA_03243 are separated by 331 nucleotides BACOVA_03240: BACOVA_03240 - outer membrane efflux protein, at 332,733 to 334,103 _03240 BACOVA_03241: BACOVA_03241 - hypothetical protein, at 334,127 to 334,372 _03241 BACOVA_03242: BACOVA_03242 - putative DNA-binding protein, at 334,515 to 334,994 _03242 BACOVA_03243: BACOVA_03243 - hypothetical protein, at 335,326 to 335,592 _03243 Position (kb) 334 335Strain fitness (log2 ratio) -2 -1 0 1 2at 333.135 kb on + strand, within BACOVA_03240at 333.135 kb on + strand, within BACOVA_03240at 333.136 kb on - strand, within BACOVA_03240at 333.137 kb on + strand, within BACOVA_03240at 333.163 kb on - strand, within BACOVA_03240at 333.164 kb on + strand, within BACOVA_03240at 333.212 kb on - strand, within BACOVA_03240at 333.215 kb on + strand, within BACOVA_03240at 333.215 kb on + strand, within BACOVA_03240at 333.216 kb on - strand, within BACOVA_03240at 333.243 kb on - strand, within BACOVA_03240at 333.243 kb on - strand, within BACOVA_03240at 333.243 kb on - strand, within BACOVA_03240at 333.249 kb on + strand, within BACOVA_03240at 333.250 kb on - strand, within BACOVA_03240at 333.250 kb on - strand, within BACOVA_03240at 333.259 kb on + strand, within BACOVA_03240at 333.302 kb on + strand, within BACOVA_03240at 333.303 kb on - strand, within BACOVA_03240at 333.308 kb on - strand, within BACOVA_03240at 333.315 kb on + strand, within BACOVA_03240at 333.465 kb on + strand, within BACOVA_03240at 333.500 kb on - strand, within BACOVA_03240at 333.500 kb on - strand, within BACOVA_03240at 333.500 kb on - strand, within BACOVA_03240at 333.554 kb on + strand, within BACOVA_03240at 333.627 kb on - strand, within BACOVA_03240at 333.634 kb on + strand, within BACOVA_03240at 333.635 kb on - strand, within BACOVA_03240at 333.659 kb on + strand, within BACOVA_03240at 333.663 kb on + strand, within BACOVA_03240at 333.664 kb on - strand, within BACOVA_03240at 333.664 kb on - strand, within BACOVA_03240at 333.664 kb on - strand, within BACOVA_03240at 333.777 kb on - strand, within BACOVA_03240at 333.781 kb on + strand, within BACOVA_03240at 333.781 kb on + strand, within BACOVA_03240at 333.873 kb on - strand, within BACOVA_03240at 333.873 kb on - strand, within BACOVA_03240at 333.990 kb on + strandat 333.991 kb on - strandat 334.023 kb on + strandat 334.056 kb on + strandat 334.056 kb on + strandat 334.057 kb on - strandat 334.065 kb on + strandat 334.066 kb on - strandat 334.066 kb on - strandat 334.074 kb on + strandat 334.075 kb on - strandat 334.105 kb on - strandat 334.160 kb on + strand, within BACOVA_03241at 334.175 kb on - strand, within BACOVA_03241at 334.187 kb on - strand, within BACOVA_03241at 334.235 kb on + strand, within BACOVA_03241at 334.257 kb on - strand, within BACOVA_03241at 334.257 kb on - strand, within BACOVA_03241at 334.279 kb on + strand, within BACOVA_03241at 334.279 kb on + strand, within BACOVA_03241at 334.279 kb on + strand, within BACOVA_03241at 334.298 kb on - strand, within BACOVA_03241at 334.379 kb on - strandat 334.384 kb on - strandat 334.401 kb on + strandat 334.402 kb on - strandat 334.408 kb on - strandat 334.439 kb on - strandat 334.497 kb on - strandat 334.516 kb on + strandat 334.517 kb on - strandat 334.637 kb on + strand, within BACOVA_03242at 334.638 kb on - strand, within BACOVA_03242at 334.641 kb on + strand, within BACOVA_03242at 334.642 kb on - strand, within BACOVA_03242at 334.703 kb on + strand, within BACOVA_03242at 334.830 kb on + strand, within BACOVA_03242at 334.869 kb on - strand, within BACOVA_03242at 334.927 kb on - strand, within BACOVA_03242at 334.931 kb on - strand, within BACOVA_03242at 334.931 kb on - strand, within BACOVA_03242at 334.982 kb on - strandat 334.985 kb on + strandat 334.986 kb on - strandat 335.028 kb on + strandat 335.061 kb on - strandat 335.063 kb on + strandat 335.064 kb on - strandat 335.098 kb on + strandat 335.098 kb on + strandat 335.098 kb on + strandat 335.105 kb on - strandat 335.109 kb on - strandat 335.162 kb on + strandat 335.163 kb on - strandat 335.164 kb on + strandat 335.193 kb on + strandat 335.193 kb on + strandat 335.194 kb on - strandat 335.244 kb on - strandat 335.279 kb on - strandat 335.288 kb on - strandat 335.293 kb on + strandat 335.294 kb on - strandat 335.294 kb on - strandat 335.298 kb on - strandat 335.300 kb on + strandat 335.310 kb on + strandat 335.314 kb on - strandat 335.314 kb on - strandat 335.314 kb on - strandat 335.320 kb on - strandat 335.321 kb on + strandat 335.321 kb on + strandat 335.326 kb on - strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.331 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C)
remove
333,135 + BACOVA_03240 0.29 +0.6
333,135 + BACOVA_03240 0.29 -0.7
333,136 - BACOVA_03240 0.29 +0.5
333,137 + BACOVA_03240 0.29 -0.8
333,163 - BACOVA_03240 0.31 -0.7
333,164 + BACOVA_03240 0.31 +0.5
333,212 - BACOVA_03240 0.35 -0.7
333,215 + BACOVA_03240 0.35 +0.0
333,215 + BACOVA_03240 0.35 -1.6
333,216 - BACOVA_03240 0.35 -0.2
333,243 - BACOVA_03240 0.37 -0.8
333,243 - BACOVA_03240 0.37 +0.2
333,243 - BACOVA_03240 0.37 +0.1
333,249 + BACOVA_03240 0.38 +0.1
333,250 - BACOVA_03240 0.38 -1.4
333,250 - BACOVA_03240 0.38 +1.0
333,259 + BACOVA_03240 0.38 -1.4
333,302 + BACOVA_03240 0.42 -0.1
333,303 - BACOVA_03240 0.42 +0.2
333,308 - BACOVA_03240 0.42 -1.2
333,315 + BACOVA_03240 0.42 -1.5
333,465 + BACOVA_03240 0.53 -0.1
333,500 - BACOVA_03240 0.56 +0.1
333,500 - BACOVA_03240 0.56 -2.4
333,500 - BACOVA_03240 0.56 -0.8
333,554 + BACOVA_03240 0.60 -1.4
333,627 - BACOVA_03240 0.65 -1.8
333,634 + BACOVA_03240 0.66 -0.4
333,635 - BACOVA_03240 0.66 +0.5
333,659 + BACOVA_03240 0.68 +0.3
333,663 + BACOVA_03240 0.68 -0.6
333,664 - BACOVA_03240 0.68 -1.1
333,664 - BACOVA_03240 0.68 -0.2
333,664 - BACOVA_03240 0.68 -0.1
333,777 - BACOVA_03240 0.76 +0.9
333,781 + BACOVA_03240 0.76 +0.4
333,781 + BACOVA_03240 0.76 -0.0
333,873 - BACOVA_03240 0.83 -1.1
333,873 - BACOVA_03240 0.83 -0.6
333,990 + +1.7
333,991 - +0.2
334,023 + +0.0
334,056 + +1.2
334,056 + -0.2
334,057 - -0.6
334,065 + -0.1
334,066 - +0.4
334,066 - +0.5
334,074 + -0.6
334,075 - +1.7
334,105 - +0.6
334,160 + BACOVA_03241 0.13 +1.1
334,175 - BACOVA_03241 0.20 -0.5
334,187 - BACOVA_03241 0.24 +0.9
334,235 + BACOVA_03241 0.44 +0.2
334,257 - BACOVA_03241 0.53 -0.1
334,257 - BACOVA_03241 0.53 +0.2
334,279 + BACOVA_03241 0.62 -0.0
334,279 + BACOVA_03241 0.62 +0.0
334,279 + BACOVA_03241 0.62 +0.2
334,298 - BACOVA_03241 0.70 +1.8
334,379 - -1.2
334,384 - -0.3
334,401 + -0.4
334,402 - -0.2
334,408 - -0.8
334,439 - +0.6
334,497 - -1.2
334,516 + -0.4
334,517 - -0.1
334,637 + BACOVA_03242 0.25 -1.7
334,638 - BACOVA_03242 0.26 +0.3
334,641 + BACOVA_03242 0.26 +1.0
334,642 - BACOVA_03242 0.26 +1.0
334,703 + BACOVA_03242 0.39 -0.2
334,830 + BACOVA_03242 0.66 +1.0
334,869 - BACOVA_03242 0.74 -0.7
334,927 - BACOVA_03242 0.86 +1.0
334,931 - BACOVA_03242 0.87 +1.5
334,931 - BACOVA_03242 0.87 -1.9
334,982 - +0.2
334,985 + -0.5
334,986 - +0.4
335,028 + +0.1
335,061 - -1.1
335,063 + -0.4
335,064 - +1.0
335,098 + -0.1
335,098 + -0.3
335,098 + +1.7
335,105 - -0.5
335,109 - +0.6
335,162 + -0.1
335,163 - -0.3
335,164 + +0.3
335,193 + -0.2
335,193 + +0.1
335,194 - -0.2
335,244 - +0.5
335,279 - +0.4
335,288 - +0.7
335,293 + -1.0
335,294 - +0.9
335,294 - -1.1
335,298 - +0.2
335,300 + +1.0
335,310 + -0.1
335,314 - +0.3
335,314 - +0.3
335,314 - +0.5
335,320 - -1.2
335,321 + -1.4
335,321 + -0.1
335,326 - -0.8
335,330 + -0.2
335,330 + +0.3
335,330 + -0.5
335,330 + -0.5
335,330 + -0.1
335,330 + -0.9
335,331 - +0.4

Or see this region's nucleotide sequence