Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02584

Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02583 and BACOVA_02584 are separated by 25 nucleotidesBACOVA_02584 and BACOVA_02585 are separated by 12 nucleotides BACOVA_02583: BACOVA_02583 - efflux transporter, RND family, MFP subunit, at 348,589 to 349,839 _02583 BACOVA_02584: BACOVA_02584 - efflux ABC transporter, permease protein, at 349,865 to 352,243 _02584 BACOVA_02585: BACOVA_02585 - efflux ABC transporter, permease protein, at 352,256 to 354,652 _02585 Position (kb) 349 350 351 352 353Strain fitness (log2 ratio) -2 -1 0 1 2 3at 348.894 kb on + strand, within BACOVA_02583at 348.894 kb on + strand, within BACOVA_02583at 348.964 kb on - strand, within BACOVA_02583at 348.964 kb on - strand, within BACOVA_02583at 348.968 kb on - strand, within BACOVA_02583at 348.968 kb on - strand, within BACOVA_02583at 349.033 kb on - strand, within BACOVA_02583at 349.036 kb on + strand, within BACOVA_02583at 349.205 kb on + strand, within BACOVA_02583at 349.210 kb on - strand, within BACOVA_02583at 349.252 kb on + strand, within BACOVA_02583at 349.261 kb on - strand, within BACOVA_02583at 349.261 kb on - strand, within BACOVA_02583at 349.279 kb on - strand, within BACOVA_02583at 349.315 kb on - strand, within BACOVA_02583at 349.323 kb on - strand, within BACOVA_02583at 349.418 kb on - strand, within BACOVA_02583at 349.420 kb on + strand, within BACOVA_02583at 349.420 kb on + strand, within BACOVA_02583at 349.422 kb on + strand, within BACOVA_02583at 349.522 kb on - strand, within BACOVA_02583at 349.568 kb on + strand, within BACOVA_02583at 349.569 kb on - strand, within BACOVA_02583at 349.569 kb on - strand, within BACOVA_02583at 349.676 kb on - strand, within BACOVA_02583at 349.676 kb on - strand, within BACOVA_02583at 349.748 kb on - strandat 349.766 kb on + strandat 349.788 kb on + strandat 349.799 kb on - strandat 349.803 kb on + strandat 349.913 kb on + strandat 349.918 kb on + strandat 349.925 kb on - strandat 349.938 kb on + strandat 349.946 kb on - strandat 349.950 kb on + strandat 349.964 kb on - strandat 349.993 kb on + strandat 350.030 kb on + strandat 350.031 kb on - strandat 350.067 kb on + strandat 350.067 kb on + strandat 350.068 kb on - strandat 350.068 kb on - strandat 350.068 kb on - strandat 350.102 kb on + strandat 350.122 kb on - strand, within BACOVA_02584at 350.182 kb on + strand, within BACOVA_02584at 350.210 kb on - strand, within BACOVA_02584at 350.216 kb on + strand, within BACOVA_02584at 350.217 kb on - strand, within BACOVA_02584at 350.217 kb on - strand, within BACOVA_02584at 350.244 kb on + strand, within BACOVA_02584at 350.383 kb on - strand, within BACOVA_02584at 350.399 kb on - strand, within BACOVA_02584at 350.399 kb on - strand, within BACOVA_02584at 350.462 kb on - strand, within BACOVA_02584at 350.462 kb on - strand, within BACOVA_02584at 350.462 kb on - strand, within BACOVA_02584at 350.503 kb on - strand, within BACOVA_02584at 350.599 kb on - strand, within BACOVA_02584at 350.606 kb on - strand, within BACOVA_02584at 350.606 kb on - strand, within BACOVA_02584at 350.606 kb on - strand, within BACOVA_02584at 350.606 kb on - strand, within BACOVA_02584at 350.610 kb on - strand, within BACOVA_02584at 350.625 kb on + strand, within BACOVA_02584at 350.647 kb on + strand, within BACOVA_02584at 350.653 kb on - strand, within BACOVA_02584at 350.681 kb on - strand, within BACOVA_02584at 350.707 kb on - strand, within BACOVA_02584at 350.748 kb on + strand, within BACOVA_02584at 350.767 kb on + strand, within BACOVA_02584at 350.774 kb on + strand, within BACOVA_02584at 350.775 kb on - strand, within BACOVA_02584at 350.826 kb on + strand, within BACOVA_02584at 350.827 kb on - strand, within BACOVA_02584at 350.911 kb on + strand, within BACOVA_02584at 350.933 kb on + strand, within BACOVA_02584at 350.934 kb on - strand, within BACOVA_02584at 350.936 kb on - strand, within BACOVA_02584at 350.952 kb on + strand, within BACOVA_02584at 350.955 kb on + strand, within BACOVA_02584at 350.956 kb on - strand, within BACOVA_02584at 350.956 kb on - strand, within BACOVA_02584at 350.992 kb on - strand, within BACOVA_02584at 350.996 kb on - strand, within BACOVA_02584at 350.996 kb on - strand, within BACOVA_02584at 351.104 kb on + strand, within BACOVA_02584at 351.106 kb on + strand, within BACOVA_02584at 351.132 kb on + strand, within BACOVA_02584at 351.133 kb on - strand, within BACOVA_02584at 351.172 kb on + strand, within BACOVA_02584at 351.192 kb on + strand, within BACOVA_02584at 351.222 kb on - strand, within BACOVA_02584at 351.222 kb on - strand, within BACOVA_02584at 351.350 kb on - strand, within BACOVA_02584at 351.365 kb on + strand, within BACOVA_02584at 351.371 kb on - strand, within BACOVA_02584at 351.419 kb on + strand, within BACOVA_02584at 351.420 kb on - strand, within BACOVA_02584at 351.425 kb on - strand, within BACOVA_02584at 351.546 kb on - strand, within BACOVA_02584at 351.546 kb on - strand, within BACOVA_02584at 351.547 kb on + strand, within BACOVA_02584at 351.566 kb on - strand, within BACOVA_02584at 351.630 kb on + strand, within BACOVA_02584at 351.644 kb on + strand, within BACOVA_02584at 351.656 kb on - strand, within BACOVA_02584at 351.658 kb on + strand, within BACOVA_02584at 351.658 kb on + strand, within BACOVA_02584at 351.659 kb on - strand, within BACOVA_02584at 351.659 kb on - strand, within BACOVA_02584at 351.659 kb on - strand, within BACOVA_02584at 351.702 kb on + strand, within BACOVA_02584at 351.715 kb on - strand, within BACOVA_02584at 351.715 kb on - strand, within BACOVA_02584at 351.723 kb on + strand, within BACOVA_02584at 351.723 kb on + strand, within BACOVA_02584at 351.725 kb on + strand, within BACOVA_02584at 351.761 kb on + strand, within BACOVA_02584at 351.810 kb on - strand, within BACOVA_02584at 351.890 kb on - strand, within BACOVA_02584at 351.890 kb on - strand, within BACOVA_02584at 351.891 kb on + strand, within BACOVA_02584at 351.895 kb on + strand, within BACOVA_02584at 351.901 kb on - strand, within BACOVA_02584at 352.039 kb on - strandat 352.039 kb on - strandat 352.039 kb on - strandat 352.084 kb on - strandat 352.122 kb on + strandat 352.123 kb on - strandat 352.123 kb on - strandat 352.127 kb on - strandat 352.194 kb on + strandat 352.194 kb on + strandat 352.248 kb on - strandat 352.252 kb on + strandat 352.260 kb on + strandat 352.261 kb on - strandat 352.342 kb on - strandat 352.357 kb on + strandat 352.361 kb on - strandat 352.362 kb on + strandat 352.363 kb on - strandat 352.363 kb on - strandat 352.363 kb on - strandat 352.366 kb on + strandat 352.366 kb on + strandat 352.366 kb on + strandat 352.367 kb on - strandat 352.367 kb on - strandat 352.367 kb on - strandat 352.367 kb on - strandat 352.367 kb on - strandat 352.370 kb on + strandat 352.387 kb on - strandat 352.394 kb on - strandat 352.416 kb on - strandat 352.444 kb on + strandat 352.505 kb on - strand, within BACOVA_02585at 352.541 kb on - strand, within BACOVA_02585at 352.541 kb on - strand, within BACOVA_02585at 352.547 kb on + strand, within BACOVA_02585at 352.547 kb on + strand, within BACOVA_02585at 352.633 kb on - strand, within BACOVA_02585at 352.639 kb on + strand, within BACOVA_02585at 352.640 kb on - strand, within BACOVA_02585at 352.662 kb on + strand, within BACOVA_02585at 352.706 kb on - strand, within BACOVA_02585at 352.709 kb on - strand, within BACOVA_02585at 352.711 kb on - strand, within BACOVA_02585at 352.735 kb on - strand, within BACOVA_02585at 352.793 kb on - strand, within BACOVA_02585at 352.808 kb on - strand, within BACOVA_02585at 352.954 kb on + strand, within BACOVA_02585at 352.973 kb on + strand, within BACOVA_02585at 353.038 kb on + strand, within BACOVA_02585at 353.039 kb on - strand, within BACOVA_02585at 353.039 kb on - strand, within BACOVA_02585at 353.042 kb on + strand, within BACOVA_02585at 353.049 kb on + strand, within BACOVA_02585at 353.051 kb on + strand, within BACOVA_02585at 353.063 kb on + strand, within BACOVA_02585at 353.064 kb on - strand, within BACOVA_02585at 353.083 kb on + strand, within BACOVA_02585at 353.083 kb on + strand, within BACOVA_02585at 353.086 kb on - strand, within BACOVA_02585at 353.086 kb on - strand, within BACOVA_02585at 353.086 kb on - strand, within BACOVA_02585at 353.110 kb on + strand, within BACOVA_02585at 353.116 kb on + strand, within BACOVA_02585at 353.154 kb on + strand, within BACOVA_02585at 353.174 kb on - strand, within BACOVA_02585at 353.229 kb on + strand, within BACOVA_02585

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Per-strain Table

Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C)
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348,894 + BACOVA_02583 0.24 -0.1
348,894 + BACOVA_02583 0.24 -0.8
348,964 - BACOVA_02583 0.30 +0.9
348,964 - BACOVA_02583 0.30 +0.6
348,968 - BACOVA_02583 0.30 -0.1
348,968 - BACOVA_02583 0.30 -0.6
349,033 - BACOVA_02583 0.35 +0.4
349,036 + BACOVA_02583 0.36 +0.7
349,205 + BACOVA_02583 0.49 +1.2
349,210 - BACOVA_02583 0.50 +0.8
349,252 + BACOVA_02583 0.53 -1.0
349,261 - BACOVA_02583 0.54 +0.9
349,261 - BACOVA_02583 0.54 -0.2
349,279 - BACOVA_02583 0.55 +0.6
349,315 - BACOVA_02583 0.58 -0.2
349,323 - BACOVA_02583 0.59 -1.0
349,418 - BACOVA_02583 0.66 +1.3
349,420 + BACOVA_02583 0.66 +0.3
349,420 + BACOVA_02583 0.66 -0.3
349,422 + BACOVA_02583 0.67 +0.6
349,522 - BACOVA_02583 0.75 +1.2
349,568 + BACOVA_02583 0.78 +0.1
349,569 - BACOVA_02583 0.78 -1.7
349,569 - BACOVA_02583 0.78 +0.3
349,676 - BACOVA_02583 0.87 -0.0
349,676 - BACOVA_02583 0.87 +0.2
349,748 - +0.7
349,766 + +0.6
349,788 + -0.3
349,799 - -0.2
349,803 + +0.7
349,913 + -0.7
349,918 + +0.6
349,925 - +0.7
349,938 + -0.4
349,946 - -0.6
349,950 + -0.8
349,964 - +1.5
349,993 + -0.0
350,030 + -0.0
350,031 - -0.3
350,067 + +1.3
350,067 + -0.0
350,068 - -0.1
350,068 - +0.7
350,068 - -0.0
350,102 + -0.9
350,122 - BACOVA_02584 0.11 -1.3
350,182 + BACOVA_02584 0.13 -2.1
350,210 - BACOVA_02584 0.15 -1.3
350,216 + BACOVA_02584 0.15 -0.9
350,217 - BACOVA_02584 0.15 +0.7
350,217 - BACOVA_02584 0.15 +0.6
350,244 + BACOVA_02584 0.16 +0.5
350,383 - BACOVA_02584 0.22 -0.6
350,399 - BACOVA_02584 0.22 -0.3
350,399 - BACOVA_02584 0.22 +0.7
350,462 - BACOVA_02584 0.25 -0.0
350,462 - BACOVA_02584 0.25 +0.7
350,462 - BACOVA_02584 0.25 +2.0
350,503 - BACOVA_02584 0.27 +1.1
350,599 - BACOVA_02584 0.31 +0.2
350,606 - BACOVA_02584 0.31 -0.3
350,606 - BACOVA_02584 0.31 -0.9
350,606 - BACOVA_02584 0.31 -0.0
350,606 - BACOVA_02584 0.31 -0.6
350,610 - BACOVA_02584 0.31 -0.9
350,625 + BACOVA_02584 0.32 -0.2
350,647 + BACOVA_02584 0.33 -2.4
350,653 - BACOVA_02584 0.33 +0.5
350,681 - BACOVA_02584 0.34 -0.3
350,707 - BACOVA_02584 0.35 -1.0
350,748 + BACOVA_02584 0.37 +0.1
350,767 + BACOVA_02584 0.38 -1.7
350,774 + BACOVA_02584 0.38 +1.3
350,775 - BACOVA_02584 0.38 -0.7
350,826 + BACOVA_02584 0.40 -0.2
350,827 - BACOVA_02584 0.40 -0.5
350,911 + BACOVA_02584 0.44 -1.2
350,933 + BACOVA_02584 0.45 +0.3
350,934 - BACOVA_02584 0.45 +0.1
350,936 - BACOVA_02584 0.45 +1.1
350,952 + BACOVA_02584 0.46 +1.1
350,955 + BACOVA_02584 0.46 -2.4
350,956 - BACOVA_02584 0.46 -2.0
350,956 - BACOVA_02584 0.46 +0.2
350,992 - BACOVA_02584 0.47 -2.1
350,996 - BACOVA_02584 0.48 -0.4
350,996 - BACOVA_02584 0.48 -0.5
351,104 + BACOVA_02584 0.52 +0.0
351,106 + BACOVA_02584 0.52 +0.6
351,132 + BACOVA_02584 0.53 +0.9
351,133 - BACOVA_02584 0.53 -0.0
351,172 + BACOVA_02584 0.55 -0.9
351,192 + BACOVA_02584 0.56 -1.2
351,222 - BACOVA_02584 0.57 -0.0
351,222 - BACOVA_02584 0.57 +0.4
351,350 - BACOVA_02584 0.62 -0.1
351,365 + BACOVA_02584 0.63 -0.5
351,371 - BACOVA_02584 0.63 -0.6
351,419 + BACOVA_02584 0.65 -0.3
351,420 - BACOVA_02584 0.65 +0.1
351,425 - BACOVA_02584 0.66 -1.3
351,546 - BACOVA_02584 0.71 +0.1
351,546 - BACOVA_02584 0.71 +1.7
351,547 + BACOVA_02584 0.71 -0.9
351,566 - BACOVA_02584 0.72 -0.8
351,630 + BACOVA_02584 0.74 -0.3
351,644 + BACOVA_02584 0.75 +0.6
351,656 - BACOVA_02584 0.75 -0.7
351,658 + BACOVA_02584 0.75 -0.6
351,658 + BACOVA_02584 0.75 +0.5
351,659 - BACOVA_02584 0.75 -0.5
351,659 - BACOVA_02584 0.75 +0.1
351,659 - BACOVA_02584 0.75 +1.8
351,702 + BACOVA_02584 0.77 -0.7
351,715 - BACOVA_02584 0.78 -0.8
351,715 - BACOVA_02584 0.78 -0.4
351,723 + BACOVA_02584 0.78 -0.3
351,723 + BACOVA_02584 0.78 -0.0
351,725 + BACOVA_02584 0.78 -0.5
351,761 + BACOVA_02584 0.80 -0.3
351,810 - BACOVA_02584 0.82 -0.3
351,890 - BACOVA_02584 0.85 +0.3
351,890 - BACOVA_02584 0.85 +0.4
351,891 + BACOVA_02584 0.85 -0.7
351,895 + BACOVA_02584 0.85 -0.2
351,901 - BACOVA_02584 0.86 +0.6
352,039 - -0.9
352,039 - +0.4
352,039 - +0.9
352,084 - +1.2
352,122 + +0.2
352,123 - +0.0
352,123 - -0.3
352,127 - -0.1
352,194 + -0.7
352,194 + +0.5
352,248 - -0.9
352,252 + -1.5
352,260 + -0.5
352,261 - -2.2
352,342 - -1.3
352,357 + +0.3
352,361 - +0.5
352,362 + +0.2
352,363 - -0.0
352,363 - -2.2
352,363 - -0.4
352,366 + -0.2
352,366 + -0.9
352,366 + +1.2
352,367 - -0.3
352,367 - +0.3
352,367 - +0.3
352,367 - -0.6
352,367 - -1.9
352,370 + +1.3
352,387 - -1.1
352,394 - -1.3
352,416 - -1.4
352,444 + -0.5
352,505 - BACOVA_02585 0.10 +0.6
352,541 - BACOVA_02585 0.12 +0.9
352,541 - BACOVA_02585 0.12 -0.5
352,547 + BACOVA_02585 0.12 +0.5
352,547 + BACOVA_02585 0.12 +0.4
352,633 - BACOVA_02585 0.16 -0.4
352,639 + BACOVA_02585 0.16 +0.6
352,640 - BACOVA_02585 0.16 -0.0
352,662 + BACOVA_02585 0.17 +2.3
352,706 - BACOVA_02585 0.19 +0.1
352,709 - BACOVA_02585 0.19 -0.9
352,711 - BACOVA_02585 0.19 -0.2
352,735 - BACOVA_02585 0.20 -0.4
352,793 - BACOVA_02585 0.22 -0.2
352,808 - BACOVA_02585 0.23 -0.4
352,954 + BACOVA_02585 0.29 +0.6
352,973 + BACOVA_02585 0.30 -0.3
353,038 + BACOVA_02585 0.33 -1.5
353,039 - BACOVA_02585 0.33 -0.9
353,039 - BACOVA_02585 0.33 -1.9
353,042 + BACOVA_02585 0.33 +3.0
353,049 + BACOVA_02585 0.33 +0.2
353,051 + BACOVA_02585 0.33 +1.6
353,063 + BACOVA_02585 0.34 +0.1
353,064 - BACOVA_02585 0.34 -0.5
353,083 + BACOVA_02585 0.35 -2.3
353,083 + BACOVA_02585 0.35 -1.5
353,086 - BACOVA_02585 0.35 +0.5
353,086 - BACOVA_02585 0.35 +0.9
353,086 - BACOVA_02585 0.35 -1.7
353,110 + BACOVA_02585 0.36 -0.5
353,116 + BACOVA_02585 0.36 -1.3
353,154 + BACOVA_02585 0.37 -1.9
353,174 - BACOVA_02585 0.38 +0.6
353,229 + BACOVA_02585 0.41 -1.3

Or see this region's nucleotide sequence