Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02475 and BACOVA_02476 are separated by 162 nucleotides BACOVA_02476 and BACOVA_02477 are separated by 68 nucleotides BACOVA_02477 and BACOVA_02478 are separated by 253 nucleotides
BACOVA_02475: BACOVA_02475 - hypothetical protein, at 239,868 to 241,442
_02475
BACOVA_02476: BACOVA_02476 - putative DNA-binding protein, at 241,605 to 242,129
_02476
BACOVA_02477: BACOVA_02477 - hypothetical protein, at 242,198 to 242,290
_02477
BACOVA_02478: BACOVA_02478 - transglycosylase, at 242,544 to 244,871
_02478
Position (kb) 242
243 Strain fitness (log2 ratio) -2
-1
0
1 at 241.241 kb on - strand, within BACOVA_02475 at 241.244 kb on + strand, within BACOVA_02475 at 241.244 kb on + strand, within BACOVA_02475 at 241.247 kb on - strand, within BACOVA_02475 at 241.250 kb on - strand, within BACOVA_02475 at 241.256 kb on + strand, within BACOVA_02475 at 241.265 kb on + strand, within BACOVA_02475 at 241.265 kb on + strand, within BACOVA_02475 at 241.266 kb on - strand, within BACOVA_02475 at 241.272 kb on + strand, within BACOVA_02475 at 241.273 kb on - strand, within BACOVA_02475 at 241.357 kb on + strand at 241.357 kb on + strand at 241.358 kb on - strand at 241.358 kb on - strand at 241.409 kb on + strand at 241.431 kb on - strand at 241.432 kb on + strand at 241.433 kb on - strand at 241.469 kb on + strand at 241.469 kb on + strand at 241.471 kb on + strand at 241.483 kb on + strand at 241.526 kb on + strand at 241.567 kb on + strand at 241.604 kb on + strand at 241.605 kb on - strand at 241.618 kb on - strand at 241.664 kb on + strand, within BACOVA_02476 at 241.671 kb on + strand, within BACOVA_02476 at 241.672 kb on - strand, within BACOVA_02476 at 241.674 kb on + strand, within BACOVA_02476 at 241.717 kb on - strand, within BACOVA_02476 at 241.810 kb on + strand, within BACOVA_02476 at 241.853 kb on + strand, within BACOVA_02476 at 241.854 kb on - strand, within BACOVA_02476 at 241.944 kb on - strand, within BACOVA_02476 at 242.014 kb on - strand, within BACOVA_02476 at 242.034 kb on - strand, within BACOVA_02476 at 242.146 kb on - strand at 242.265 kb on + strand, within BACOVA_02477 at 242.265 kb on + strand, within BACOVA_02477 at 242.289 kb on - strand at 242.289 kb on - strand at 242.302 kb on - strand at 242.303 kb on + strand at 242.304 kb on - strand at 242.311 kb on + strand at 242.311 kb on + strand at 242.311 kb on + strand at 242.312 kb on - strand at 242.313 kb on + strand at 242.314 kb on - strand at 242.328 kb on - strand at 242.328 kb on - strand at 242.366 kb on + strand at 242.367 kb on - strand at 242.367 kb on - strand at 242.369 kb on + strand at 242.369 kb on + strand at 242.370 kb on - strand at 242.370 kb on - strand at 242.370 kb on - strand at 242.418 kb on + strand at 242.419 kb on - strand at 242.426 kb on - strand at 242.447 kb on - strand at 242.454 kb on + strand at 242.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 241,241 - BACOVA_02475 0.87 -0.5 241,244 + BACOVA_02475 0.87 -1.8 241,244 + BACOVA_02475 0.87 -1.3 241,247 - BACOVA_02475 0.88 +1.3 241,250 - BACOVA_02475 0.88 -0.6 241,256 + BACOVA_02475 0.88 -2.5 241,265 + BACOVA_02475 0.89 -0.0 241,265 + BACOVA_02475 0.89 +1.1 241,266 - BACOVA_02475 0.89 -0.1 241,272 + BACOVA_02475 0.89 +0.5 241,273 - BACOVA_02475 0.89 +0.6 241,357 + -1.2 241,357 + -0.1 241,358 - -1.4 241,358 - -1.1 241,409 + +1.5 241,431 - -1.3 241,432 + +0.5 241,433 - +1.0 241,469 + +0.2 241,469 + -0.3 241,471 + +0.9 241,483 + +1.3 241,526 + +1.0 241,567 + -2.3 241,604 + +0.5 241,605 - -0.4 241,618 - +1.1 241,664 + BACOVA_02476 0.11 +1.0 241,671 + BACOVA_02476 0.13 +0.8 241,672 - BACOVA_02476 0.13 +1.1 241,674 + BACOVA_02476 0.13 -0.2 241,717 - BACOVA_02476 0.21 -1.2 241,810 + BACOVA_02476 0.39 +1.1 241,853 + BACOVA_02476 0.47 -1.5 241,854 - BACOVA_02476 0.47 +0.1 241,944 - BACOVA_02476 0.65 -1.0 242,014 - BACOVA_02476 0.78 +0.2 242,034 - BACOVA_02476 0.82 +0.4 242,146 - +0.0 242,265 + BACOVA_02477 0.72 -0.6 242,265 + BACOVA_02477 0.72 -0.1 242,289 - +0.0 242,289 - +0.3 242,302 - -2.1 242,303 + +0.3 242,304 - -1.4 242,311 + -0.1 242,311 + -0.5 242,311 + -0.1 242,312 - -0.4 242,313 + +0.7 242,314 - +0.3 242,328 - -0.3 242,328 - -0.3 242,366 + +0.5 242,367 - -0.1 242,367 - -0.3 242,369 + -0.8 242,369 + +0.3 242,370 - -1.3 242,370 - -0.3 242,370 - -1.8 242,418 + +0.4 242,419 - -0.4 242,426 - -0.2 242,447 - +0.0 242,454 + -1.1 242,529 + -0.6
Or see this region's nucleotide sequence