Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02265

Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02264 and BACOVA_02265 are separated by 111 nucleotidesBACOVA_02265 and BACOVA_02266 are separated by 70 nucleotides BACOVA_02264: BACOVA_02264 - radical SAM domain protein, at 39,826 to 41,184 _02264 BACOVA_02265: BACOVA_02265 - hypothetical protein, at 41,296 to 41,709 _02265 BACOVA_02266: BACOVA_02266 - pseudouridine synthase, RluA family, at 41,780 to 42,733 _02266 Position (kb) 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 40.357 kb on - strand, within BACOVA_02264at 40.369 kb on + strand, within BACOVA_02264at 40.370 kb on - strand, within BACOVA_02264at 40.426 kb on + strand, within BACOVA_02264at 40.448 kb on - strand, within BACOVA_02264at 40.454 kb on - strand, within BACOVA_02264at 40.507 kb on + strand, within BACOVA_02264at 40.507 kb on + strand, within BACOVA_02264at 40.508 kb on - strand, within BACOVA_02264at 40.568 kb on - strand, within BACOVA_02264at 40.617 kb on + strand, within BACOVA_02264at 40.736 kb on + strand, within BACOVA_02264at 40.737 kb on - strand, within BACOVA_02264at 40.859 kb on - strand, within BACOVA_02264at 40.872 kb on + strand, within BACOVA_02264at 40.897 kb on + strand, within BACOVA_02264at 40.921 kb on - strand, within BACOVA_02264at 40.921 kb on - strand, within BACOVA_02264at 40.921 kb on - strand, within BACOVA_02264at 40.936 kb on + strand, within BACOVA_02264at 40.937 kb on - strand, within BACOVA_02264at 40.987 kb on + strand, within BACOVA_02264at 40.998 kb on + strand, within BACOVA_02264at 40.999 kb on - strand, within BACOVA_02264at 41.065 kb on - strandat 41.080 kb on - strandat 41.101 kb on - strandat 41.119 kb on + strandat 41.119 kb on + strandat 41.120 kb on - strandat 41.120 kb on - strandat 41.157 kb on + strandat 41.161 kb on + strandat 41.195 kb on + strandat 41.240 kb on + strandat 41.240 kb on + strandat 41.243 kb on - strandat 41.245 kb on + strandat 41.246 kb on - strandat 41.252 kb on - strandat 41.270 kb on + strandat 41.295 kb on + strandat 41.307 kb on - strandat 41.315 kb on - strandat 41.315 kb on - strandat 41.342 kb on + strand, within BACOVA_02265at 41.342 kb on + strand, within BACOVA_02265at 41.355 kb on + strand, within BACOVA_02265at 41.356 kb on - strand, within BACOVA_02265at 41.388 kb on + strand, within BACOVA_02265at 41.389 kb on - strand, within BACOVA_02265at 41.408 kb on - strand, within BACOVA_02265at 41.408 kb on - strand, within BACOVA_02265at 41.410 kb on - strand, within BACOVA_02265at 41.410 kb on - strand, within BACOVA_02265at 41.410 kb on - strand, within BACOVA_02265at 41.413 kb on - strand, within BACOVA_02265at 41.437 kb on + strand, within BACOVA_02265at 41.437 kb on + strand, within BACOVA_02265at 41.438 kb on - strand, within BACOVA_02265at 41.439 kb on + strand, within BACOVA_02265at 41.439 kb on + strand, within BACOVA_02265at 41.440 kb on - strand, within BACOVA_02265at 41.454 kb on + strand, within BACOVA_02265at 41.454 kb on + strand, within BACOVA_02265at 41.455 kb on - strand, within BACOVA_02265at 41.455 kb on - strand, within BACOVA_02265at 41.455 kb on - strand, within BACOVA_02265at 41.470 kb on - strand, within BACOVA_02265at 41.551 kb on + strand, within BACOVA_02265at 41.553 kb on + strand, within BACOVA_02265at 41.553 kb on + strand, within BACOVA_02265at 41.553 kb on + strand, within BACOVA_02265at 41.590 kb on + strand, within BACOVA_02265at 41.590 kb on + strand, within BACOVA_02265at 41.590 kb on + strand, within BACOVA_02265at 41.591 kb on - strand, within BACOVA_02265at 41.598 kb on + strand, within BACOVA_02265at 41.598 kb on + strand, within BACOVA_02265at 41.599 kb on - strand, within BACOVA_02265at 41.599 kb on - strand, within BACOVA_02265at 41.599 kb on - strand, within BACOVA_02265at 41.599 kb on - strand, within BACOVA_02265at 41.645 kb on - strand, within BACOVA_02265at 41.649 kb on + strand, within BACOVA_02265at 41.649 kb on + strand, within BACOVA_02265at 41.649 kb on + strand, within BACOVA_02265at 41.649 kb on + strand, within BACOVA_02265at 41.650 kb on - strand, within BACOVA_02265at 41.650 kb on - strand, within BACOVA_02265at 41.670 kb on + strandat 41.676 kb on - strandat 41.676 kb on - strandat 41.695 kb on - strandat 41.695 kb on - strandat 41.713 kb on - strandat 41.748 kb on - strandat 41.772 kb on - strandat 41.777 kb on - strandat 41.925 kb on + strand, within BACOVA_02266at 41.941 kb on + strand, within BACOVA_02266at 41.944 kb on + strand, within BACOVA_02266at 41.944 kb on + strand, within BACOVA_02266at 41.944 kb on + strand, within BACOVA_02266at 41.945 kb on - strand, within BACOVA_02266at 41.945 kb on - strand, within BACOVA_02266at 41.945 kb on - strand, within BACOVA_02266at 41.954 kb on + strand, within BACOVA_02266at 41.955 kb on - strand, within BACOVA_02266at 42.046 kb on + strand, within BACOVA_02266at 42.046 kb on + strand, within BACOVA_02266at 42.046 kb on + strand, within BACOVA_02266at 42.048 kb on + strand, within BACOVA_02266at 42.049 kb on - strand, within BACOVA_02266at 42.059 kb on - strand, within BACOVA_02266at 42.082 kb on - strand, within BACOVA_02266at 42.096 kb on - strand, within BACOVA_02266at 42.100 kb on - strand, within BACOVA_02266at 42.100 kb on - strand, within BACOVA_02266at 42.109 kb on + strand, within BACOVA_02266at 42.133 kb on + strand, within BACOVA_02266at 42.133 kb on + strand, within BACOVA_02266at 42.151 kb on + strand, within BACOVA_02266at 42.170 kb on + strand, within BACOVA_02266at 42.170 kb on + strand, within BACOVA_02266at 42.174 kb on + strand, within BACOVA_02266at 42.213 kb on - strand, within BACOVA_02266at 42.213 kb on - strand, within BACOVA_02266at 42.238 kb on + strand, within BACOVA_02266at 42.238 kb on + strand, within BACOVA_02266at 42.322 kb on - strand, within BACOVA_02266at 42.329 kb on - strand, within BACOVA_02266at 42.332 kb on + strand, within BACOVA_02266at 42.332 kb on + strand, within BACOVA_02266at 42.333 kb on - strand, within BACOVA_02266at 42.333 kb on - strand, within BACOVA_02266at 42.337 kb on + strand, within BACOVA_02266at 42.337 kb on + strand, within BACOVA_02266at 42.338 kb on - strand, within BACOVA_02266at 42.340 kb on - strand, within BACOVA_02266at 42.409 kb on + strand, within BACOVA_02266at 42.409 kb on + strand, within BACOVA_02266at 42.409 kb on + strand, within BACOVA_02266at 42.410 kb on - strand, within BACOVA_02266at 42.411 kb on + strand, within BACOVA_02266at 42.411 kb on + strand, within BACOVA_02266at 42.423 kb on + strand, within BACOVA_02266at 42.424 kb on - strand, within BACOVA_02266at 42.446 kb on - strand, within BACOVA_02266at 42.449 kb on - strand, within BACOVA_02266at 42.533 kb on - strand, within BACOVA_02266at 42.542 kb on + strand, within BACOVA_02266at 42.543 kb on - strand, within BACOVA_02266at 42.557 kb on + strand, within BACOVA_02266at 42.560 kb on + strand, within BACOVA_02266at 42.561 kb on - strand, within BACOVA_02266at 42.617 kb on + strand, within BACOVA_02266at 42.643 kb on - strandat 42.643 kb on - strandat 42.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C)
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40,357 - BACOVA_02264 0.39 -0.7
40,369 + BACOVA_02264 0.40 -0.7
40,370 - BACOVA_02264 0.40 -1.2
40,426 + BACOVA_02264 0.44 -0.2
40,448 - BACOVA_02264 0.46 +0.1
40,454 - BACOVA_02264 0.46 -1.5
40,507 + BACOVA_02264 0.50 +0.3
40,507 + BACOVA_02264 0.50 +1.3
40,508 - BACOVA_02264 0.50 +0.1
40,568 - BACOVA_02264 0.55 +0.5
40,617 + BACOVA_02264 0.58 +0.1
40,736 + BACOVA_02264 0.67 -0.9
40,737 - BACOVA_02264 0.67 +0.3
40,859 - BACOVA_02264 0.76 -0.6
40,872 + BACOVA_02264 0.77 +0.9
40,897 + BACOVA_02264 0.79 -0.5
40,921 - BACOVA_02264 0.81 -0.3
40,921 - BACOVA_02264 0.81 -0.8
40,921 - BACOVA_02264 0.81 +0.3
40,936 + BACOVA_02264 0.82 +0.3
40,937 - BACOVA_02264 0.82 -2.1
40,987 + BACOVA_02264 0.85 +0.7
40,998 + BACOVA_02264 0.86 +0.0
40,999 - BACOVA_02264 0.86 +1.9
41,065 - +0.0
41,080 - -0.7
41,101 - -0.0
41,119 + -0.9
41,119 + -1.0
41,120 - +0.5
41,120 - +1.8
41,157 + -2.1
41,161 + -1.0
41,195 + +0.1
41,240 + -0.7
41,240 + +1.0
41,243 - -1.2
41,245 + -2.2
41,246 - +2.6
41,252 - -1.1
41,270 + -0.3
41,295 + -0.5
41,307 - -0.7
41,315 - +1.2
41,315 - +0.2
41,342 + BACOVA_02265 0.11 +0.0
41,342 + BACOVA_02265 0.11 +1.4
41,355 + BACOVA_02265 0.14 -0.5
41,356 - BACOVA_02265 0.14 +0.8
41,388 + BACOVA_02265 0.22 +0.8
41,389 - BACOVA_02265 0.22 -0.5
41,408 - BACOVA_02265 0.27 +0.2
41,408 - BACOVA_02265 0.27 -0.3
41,410 - BACOVA_02265 0.28 +0.2
41,410 - BACOVA_02265 0.28 -0.2
41,410 - BACOVA_02265 0.28 -1.1
41,413 - BACOVA_02265 0.28 -0.2
41,437 + BACOVA_02265 0.34 -0.2
41,437 + BACOVA_02265 0.34 +0.2
41,438 - BACOVA_02265 0.34 -0.0
41,439 + BACOVA_02265 0.35 -0.3
41,439 + BACOVA_02265 0.35 +0.1
41,440 - BACOVA_02265 0.35 -0.2
41,454 + BACOVA_02265 0.38 -0.7
41,454 + BACOVA_02265 0.38 +1.3
41,455 - BACOVA_02265 0.38 -1.6
41,455 - BACOVA_02265 0.38 -0.2
41,455 - BACOVA_02265 0.38 -1.1
41,470 - BACOVA_02265 0.42 -1.7
41,551 + BACOVA_02265 0.62 +0.8
41,553 + BACOVA_02265 0.62 +0.3
41,553 + BACOVA_02265 0.62 +0.1
41,553 + BACOVA_02265 0.62 -0.8
41,590 + BACOVA_02265 0.71 +0.8
41,590 + BACOVA_02265 0.71 +0.9
41,590 + BACOVA_02265 0.71 -1.3
41,591 - BACOVA_02265 0.71 +0.6
41,598 + BACOVA_02265 0.73 -0.2
41,598 + BACOVA_02265 0.73 -1.7
41,599 - BACOVA_02265 0.73 +0.4
41,599 - BACOVA_02265 0.73 -0.6
41,599 - BACOVA_02265 0.73 -0.1
41,599 - BACOVA_02265 0.73 -1.0
41,645 - BACOVA_02265 0.84 +0.4
41,649 + BACOVA_02265 0.85 +0.9
41,649 + BACOVA_02265 0.85 -0.4
41,649 + BACOVA_02265 0.85 -1.0
41,649 + BACOVA_02265 0.85 -0.5
41,650 - BACOVA_02265 0.86 -1.0
41,650 - BACOVA_02265 0.86 +1.3
41,670 + -0.4
41,676 - +0.2
41,676 - +0.3
41,695 - -0.7
41,695 - -0.2
41,713 - -2.5
41,748 - -0.7
41,772 - -1.4
41,777 - +1.7
41,925 + BACOVA_02266 0.15 +0.0
41,941 + BACOVA_02266 0.17 +0.3
41,944 + BACOVA_02266 0.17 +0.7
41,944 + BACOVA_02266 0.17 -0.6
41,944 + BACOVA_02266 0.17 -0.2
41,945 - BACOVA_02266 0.17 -0.0
41,945 - BACOVA_02266 0.17 -0.5
41,945 - BACOVA_02266 0.17 -1.3
41,954 + BACOVA_02266 0.18 +0.8
41,955 - BACOVA_02266 0.18 -0.5
42,046 + BACOVA_02266 0.28 -0.5
42,046 + BACOVA_02266 0.28 -1.3
42,046 + BACOVA_02266 0.28 +0.5
42,048 + BACOVA_02266 0.28 -0.7
42,049 - BACOVA_02266 0.28 -0.4
42,059 - BACOVA_02266 0.29 -0.0
42,082 - BACOVA_02266 0.32 -2.4
42,096 - BACOVA_02266 0.33 -2.4
42,100 - BACOVA_02266 0.34 -0.5
42,100 - BACOVA_02266 0.34 -0.1
42,109 + BACOVA_02266 0.34 +0.6
42,133 + BACOVA_02266 0.37 -0.7
42,133 + BACOVA_02266 0.37 +1.0
42,151 + BACOVA_02266 0.39 -0.8
42,170 + BACOVA_02266 0.41 -1.0
42,170 + BACOVA_02266 0.41 -0.8
42,174 + BACOVA_02266 0.41 +0.5
42,213 - BACOVA_02266 0.45 -0.9
42,213 - BACOVA_02266 0.45 +0.1
42,238 + BACOVA_02266 0.48 -1.4
42,238 + BACOVA_02266 0.48 -1.1
42,322 - BACOVA_02266 0.57 +0.3
42,329 - BACOVA_02266 0.58 -0.5
42,332 + BACOVA_02266 0.58 -0.4
42,332 + BACOVA_02266 0.58 -2.1
42,333 - BACOVA_02266 0.58 -1.4
42,333 - BACOVA_02266 0.58 -0.4
42,337 + BACOVA_02266 0.58 -0.5
42,337 + BACOVA_02266 0.58 +0.1
42,338 - BACOVA_02266 0.58 -1.6
42,340 - BACOVA_02266 0.59 -0.8
42,409 + BACOVA_02266 0.66 +2.6
42,409 + BACOVA_02266 0.66 -0.9
42,409 + BACOVA_02266 0.66 -1.4
42,410 - BACOVA_02266 0.66 -0.8
42,411 + BACOVA_02266 0.66 -0.3
42,411 + BACOVA_02266 0.66 -0.2
42,423 + BACOVA_02266 0.67 -0.2
42,424 - BACOVA_02266 0.68 -1.9
42,446 - BACOVA_02266 0.70 +0.6
42,449 - BACOVA_02266 0.70 -0.5
42,533 - BACOVA_02266 0.79 -0.2
42,542 + BACOVA_02266 0.80 +0.5
42,543 - BACOVA_02266 0.80 -0.5
42,557 + BACOVA_02266 0.81 +1.9
42,560 + BACOVA_02266 0.82 -0.1
42,561 - BACOVA_02266 0.82 -1.1
42,617 + BACOVA_02266 0.88 +0.2
42,643 - -0.1
42,643 - +0.8
42,652 - -0.7

Or see this region's nucleotide sequence