Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01727 and BACOVA_01728 are separated by 220 nucleotides BACOVA_01728 and BACOVA_01729 are separated by 133 nucleotides BACOVA_01729 and BACOVA_01730 are separated by 29 nucleotides BACOVA_01730 and BACOVA_01731 are separated by 151 nucleotides BACOVA_01731 and BACOVA_01732 overlap by 4 nucleotides
BACOVA_01727: BACOVA_01727 - putative DNA-binding protein, at 152,458 to 152,946
_01727
BACOVA_01728: BACOVA_01728 - hypothetical protein, at 153,167 to 153,385
_01728
BACOVA_01729: BACOVA_01729 - hypothetical protein, at 153,519 to 155,351
_01729
BACOVA_01730: BACOVA_01730 - VirE N-terminal domain protein, at 155,381 to 156,010
_01730
BACOVA_01731: BACOVA_01731 - hypothetical protein, at 156,162 to 156,311
_01731
BACOVA_01732: BACOVA_01732 - hypothetical protein, at 156,308 to 156,427
_01732
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.637 kb on + strand, within BACOVA_01727 at 152.770 kb on + strand, within BACOVA_01727 at 153.184 kb on - strand at 153.191 kb on + strand, within BACOVA_01728 at 153.309 kb on + strand, within BACOVA_01728 at 153.309 kb on + strand, within BACOVA_01728 at 153.309 kb on + strand, within BACOVA_01728 at 153.363 kb on + strand, within BACOVA_01728 at 153.363 kb on + strand, within BACOVA_01728 at 153.383 kb on + strand at 153.412 kb on + strand at 153.428 kb on - strand at 153.443 kb on + strand at 153.443 kb on + strand at 153.457 kb on - strand at 153.486 kb on - strand at 153.486 kb on - strand at 153.569 kb on - strand at 153.608 kb on + strand at 153.608 kb on + strand at 153.751 kb on - strand, within BACOVA_01729 at 153.755 kb on + strand, within BACOVA_01729 at 153.945 kb on + strand, within BACOVA_01729 at 153.946 kb on - strand, within BACOVA_01729 at 153.946 kb on - strand, within BACOVA_01729 at 153.968 kb on + strand, within BACOVA_01729 at 153.977 kb on + strand, within BACOVA_01729 at 154.152 kb on + strand, within BACOVA_01729 at 154.152 kb on + strand, within BACOVA_01729 at 154.152 kb on + strand, within BACOVA_01729 at 154.152 kb on + strand, within BACOVA_01729 at 154.153 kb on - strand, within BACOVA_01729 at 154.153 kb on - strand, within BACOVA_01729 at 154.153 kb on - strand, within BACOVA_01729 at 154.215 kb on + strand, within BACOVA_01729 at 154.216 kb on - strand, within BACOVA_01729 at 154.216 kb on - strand, within BACOVA_01729 at 154.216 kb on - strand, within BACOVA_01729 at 154.226 kb on + strand, within BACOVA_01729 at 154.227 kb on - strand, within BACOVA_01729 at 154.227 kb on - strand, within BACOVA_01729 at 154.227 kb on - strand, within BACOVA_01729 at 154.232 kb on - strand, within BACOVA_01729 at 154.469 kb on + strand, within BACOVA_01729 at 154.469 kb on + strand, within BACOVA_01729 at 154.470 kb on - strand, within BACOVA_01729 at 154.497 kb on - strand, within BACOVA_01729 at 154.524 kb on - strand, within BACOVA_01729 at 154.599 kb on - strand, within BACOVA_01729 at 154.599 kb on - strand, within BACOVA_01729 at 154.599 kb on - strand, within BACOVA_01729 at 154.728 kb on + strand, within BACOVA_01729 at 154.728 kb on + strand, within BACOVA_01729 at 154.806 kb on + strand, within BACOVA_01729 at 154.807 kb on - strand, within BACOVA_01729 at 154.986 kb on - strand, within BACOVA_01729 at 154.986 kb on - strand, within BACOVA_01729 at 154.987 kb on + strand, within BACOVA_01729 at 154.987 kb on + strand, within BACOVA_01729 at 154.989 kb on + strand, within BACOVA_01729 at 154.990 kb on - strand, within BACOVA_01729 at 155.079 kb on + strand, within BACOVA_01729 at 155.080 kb on - strand, within BACOVA_01729 at 155.142 kb on - strand, within BACOVA_01729 at 155.183 kb on - strand at 155.266 kb on - strand at 155.270 kb on - strand at 155.279 kb on - strand at 155.331 kb on + strand at 155.364 kb on + strand at 155.371 kb on + strand at 155.378 kb on + strand at 155.460 kb on - strand, within BACOVA_01730 at 155.506 kb on - strand, within BACOVA_01730 at 155.521 kb on - strand, within BACOVA_01730 at 155.540 kb on - strand, within BACOVA_01730 at 155.586 kb on + strand, within BACOVA_01730 at 155.636 kb on + strand, within BACOVA_01730 at 155.681 kb on + strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.717 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.820 kb on - strand, within BACOVA_01730 at 155.920 kb on + strand, within BACOVA_01730 at 155.936 kb on - strand, within BACOVA_01730 at 155.985 kb on + strand at 155.986 kb on - strand at 156.011 kb on - strand at 156.021 kb on - strand at 156.021 kb on - strand at 156.095 kb on + strand at 156.222 kb on - strand, within BACOVA_01731 at 156.229 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.248 kb on + strand, within BACOVA_01731 at 156.257 kb on - strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.276 kb on + strand, within BACOVA_01731 at 156.320 kb on - strand, within BACOVA_01732
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 152,637 + BACOVA_01727 0.37 +0.1 152,770 + BACOVA_01727 0.64 -0.7 153,184 - +0.8 153,191 + BACOVA_01728 0.11 +0.2 153,309 + BACOVA_01728 0.65 -2.7 153,309 + BACOVA_01728 0.65 +0.2 153,309 + BACOVA_01728 0.65 -1.2 153,363 + BACOVA_01728 0.89 -0.4 153,363 + BACOVA_01728 0.89 -0.5 153,383 + -1.8 153,412 + -1.1 153,428 - -0.5 153,443 + -1.8 153,443 + +0.9 153,457 - +0.4 153,486 - -0.1 153,486 - -0.3 153,569 - +1.8 153,608 + -0.7 153,608 + +0.3 153,751 - BACOVA_01729 0.13 -2.0 153,755 + BACOVA_01729 0.13 +1.7 153,945 + BACOVA_01729 0.23 -0.2 153,946 - BACOVA_01729 0.23 +0.1 153,946 - BACOVA_01729 0.23 +0.9 153,968 + BACOVA_01729 0.24 -1.1 153,977 + BACOVA_01729 0.25 +0.1 154,152 + BACOVA_01729 0.35 +0.0 154,152 + BACOVA_01729 0.35 +1.4 154,152 + BACOVA_01729 0.35 -0.1 154,152 + BACOVA_01729 0.35 -0.0 154,153 - BACOVA_01729 0.35 -1.4 154,153 - BACOVA_01729 0.35 +0.0 154,153 - BACOVA_01729 0.35 +0.3 154,215 + BACOVA_01729 0.38 -0.8 154,216 - BACOVA_01729 0.38 +1.1 154,216 - BACOVA_01729 0.38 +0.5 154,216 - BACOVA_01729 0.38 -1.0 154,226 + BACOVA_01729 0.39 +1.4 154,227 - BACOVA_01729 0.39 +0.1 154,227 - BACOVA_01729 0.39 -0.2 154,227 - BACOVA_01729 0.39 -0.2 154,232 - BACOVA_01729 0.39 +1.1 154,469 + BACOVA_01729 0.52 +0.1 154,469 + BACOVA_01729 0.52 +1.0 154,470 - BACOVA_01729 0.52 -0.3 154,497 - BACOVA_01729 0.53 +1.6 154,524 - BACOVA_01729 0.55 +0.0 154,599 - BACOVA_01729 0.59 +0.3 154,599 - BACOVA_01729 0.59 -1.1 154,599 - BACOVA_01729 0.59 -0.8 154,728 + BACOVA_01729 0.66 -0.1 154,728 + BACOVA_01729 0.66 +0.3 154,806 + BACOVA_01729 0.70 +0.4 154,807 - BACOVA_01729 0.70 +1.3 154,986 - BACOVA_01729 0.80 -0.9 154,986 - BACOVA_01729 0.80 -2.1 154,987 + BACOVA_01729 0.80 +0.0 154,987 + BACOVA_01729 0.80 +0.8 154,989 + BACOVA_01729 0.80 -2.1 154,990 - BACOVA_01729 0.80 -0.3 155,079 + BACOVA_01729 0.85 +0.4 155,080 - BACOVA_01729 0.85 -2.1 155,142 - BACOVA_01729 0.89 -1.6 155,183 - -2.0 155,266 - +1.0 155,270 - -1.2 155,279 - -0.2 155,331 + -1.5 155,364 + -0.0 155,371 + -1.9 155,378 + -0.6 155,460 - BACOVA_01730 0.13 -0.5 155,506 - BACOVA_01730 0.20 +1.2 155,521 - BACOVA_01730 0.22 -0.2 155,540 - BACOVA_01730 0.25 -0.3 155,586 + BACOVA_01730 0.33 -0.9 155,636 + BACOVA_01730 0.40 +0.8 155,681 + BACOVA_01730 0.48 -0.9 155,695 - BACOVA_01730 0.50 -0.2 155,695 - BACOVA_01730 0.50 +1.6 155,717 - BACOVA_01730 0.53 -1.1 155,791 - BACOVA_01730 0.65 +0.2 155,791 - BACOVA_01730 0.65 -0.9 155,791 - BACOVA_01730 0.65 +0.1 155,820 - BACOVA_01730 0.70 -0.4 155,920 + BACOVA_01730 0.86 -0.6 155,936 - BACOVA_01730 0.88 +0.1 155,985 + +0.8 155,986 - -0.1 156,011 - -1.8 156,021 - +0.7 156,021 - +0.7 156,095 + -2.6 156,222 - BACOVA_01731 0.40 +0.1 156,229 + BACOVA_01731 0.45 -0.2 156,242 + BACOVA_01731 0.53 -0.4 156,242 + BACOVA_01731 0.53 -1.1 156,248 + BACOVA_01731 0.57 -1.1 156,257 - BACOVA_01731 0.63 +0.1 156,260 + BACOVA_01731 0.65 -0.6 156,260 + BACOVA_01731 0.65 -0.8 156,261 - BACOVA_01731 0.66 -1.1 156,261 - BACOVA_01731 0.66 +0.2 156,276 + BACOVA_01731 0.76 +0.6 156,320 - BACOVA_01732 0.10 -1.2
Or see this region's nucleotide sequence