Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00582 and BACOVA_00583 are separated by 4 nucleotides BACOVA_00583 and BACOVA_00584 overlap by 17 nucleotides BACOVA_00584 and BACOVA_00585 are separated by 10 nucleotides BACOVA_00585 and BACOVA_00586 overlap by 26 nucleotides
BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085
_00582
BACOVA_00583: BACOVA_00583 - RNA polymerase sigma factor, sigma-70 family, at 18,090 to 18,662
_00583
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
BACOVA_00585: BACOVA_00585 - RyR domain protein, at 19,745 to 20,050
_00585
BACOVA_00586: BACOVA_00586 - tetratricopeptide repeat protein, at 20,025 to 23,306
_00586
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.668 kb on + strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.669 kb on - strand, within BACOVA_00582 at 17.719 kb on + strand, within BACOVA_00582 at 17.724 kb on + strand, within BACOVA_00582 at 17.783 kb on - strand, within BACOVA_00582 at 17.786 kb on - strand, within BACOVA_00582 at 17.844 kb on - strand, within BACOVA_00582 at 17.848 kb on + strand, within BACOVA_00582 at 17.849 kb on - strand, within BACOVA_00582 at 17.873 kb on - strand at 17.877 kb on + strand at 17.877 kb on + strand at 17.885 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.923 kb on + strand at 17.943 kb on + strand at 17.984 kb on - strand at 18.017 kb on - strand at 18.083 kb on + strand at 18.087 kb on + strand at 18.087 kb on + strand at 18.088 kb on - strand at 18.090 kb on - strand at 18.107 kb on - strand at 18.107 kb on - strand at 18.160 kb on + strand, within BACOVA_00583 at 18.179 kb on + strand, within BACOVA_00583 at 18.199 kb on + strand, within BACOVA_00583 at 18.219 kb on + strand, within BACOVA_00583 at 18.243 kb on + strand, within BACOVA_00583 at 18.244 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.297 kb on - strand, within BACOVA_00583 at 18.397 kb on - strand, within BACOVA_00583 at 18.488 kb on + strand, within BACOVA_00583 at 18.517 kb on + strand, within BACOVA_00583 at 18.553 kb on + strand, within BACOVA_00583 at 18.554 kb on - strand, within BACOVA_00583 at 18.557 kb on + strand, within BACOVA_00583 at 18.575 kb on + strand, within BACOVA_00583 at 18.576 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.588 kb on - strand, within BACOVA_00583 at 18.622 kb on + strand at 18.623 kb on - strand at 18.626 kb on + strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.667 kb on - strand at 18.705 kb on + strand at 18.705 kb on + strand at 18.734 kb on + strand at 18.743 kb on - strand at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.870 kb on + strand, within BACOVA_00584 at 18.912 kb on + strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.928 kb on - strand, within BACOVA_00584 at 18.996 kb on + strand, within BACOVA_00584 at 19.001 kb on + strand, within BACOVA_00584 at 19.002 kb on - strand, within BACOVA_00584 at 19.057 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.113 kb on + strand, within BACOVA_00584 at 19.114 kb on - strand, within BACOVA_00584 at 19.134 kb on + strand, within BACOVA_00584 at 19.135 kb on - strand, within BACOVA_00584 at 19.148 kb on + strand, within BACOVA_00584 at 19.154 kb on - strand, within BACOVA_00584 at 19.167 kb on - strand, within BACOVA_00584 at 19.179 kb on - strand, within BACOVA_00584 at 19.252 kb on - strand, within BACOVA_00584 at 19.326 kb on + strand, within BACOVA_00584 at 19.505 kb on - strand, within BACOVA_00584 at 19.530 kb on + strand, within BACOVA_00584 at 19.542 kb on + strand, within BACOVA_00584 at 19.570 kb on + strand, within BACOVA_00584 at 19.572 kb on + strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.576 kb on - strand, within BACOVA_00584 at 19.674 kb on + strand at 19.687 kb on + strand at 19.738 kb on - strand at 19.739 kb on + strand at 19.739 kb on + strand at 19.740 kb on - strand at 19.740 kb on - strand at 19.766 kb on + strand at 19.820 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 20.049 kb on - strand at 20.076 kb on - strand at 20.076 kb on - strand at 20.122 kb on + strand at 20.122 kb on + strand at 20.136 kb on + strand at 20.186 kb on + strand at 20.303 kb on + strand at 20.339 kb on + strand at 20.397 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.499 kb on + strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.566 kb on - strand, within BACOVA_00586 at 20.571 kb on + strand, within BACOVA_00586 at 20.611 kb on - strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.636 kb on - strand, within BACOVA_00586 at 20.640 kb on + strand, within BACOVA_00586 at 20.684 kb on + strand, within BACOVA_00586 at 20.694 kb on - strand, within BACOVA_00586
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C) remove 17,668 + BACOVA_00582 0.81 +1.1 17,669 - BACOVA_00582 0.82 -0.3 17,669 - BACOVA_00582 0.82 -0.1 17,669 - BACOVA_00582 0.82 +0.7 17,669 - BACOVA_00582 0.82 -0.2 17,719 + BACOVA_00582 0.84 +0.6 17,724 + BACOVA_00582 0.84 -0.1 17,783 - BACOVA_00582 0.87 -0.4 17,786 - BACOVA_00582 0.87 -0.4 17,844 - BACOVA_00582 0.89 +0.0 17,848 + BACOVA_00582 0.89 -0.4 17,849 - BACOVA_00582 0.90 -0.2 17,873 - -0.5 17,877 + -0.7 17,877 + +1.2 17,885 + +1.4 17,923 + -0.2 17,923 + -0.6 17,923 + +0.1 17,923 + -1.5 17,943 + +0.1 17,984 - -0.4 18,017 - +1.4 18,083 + -0.9 18,087 + -1.7 18,087 + -0.1 18,088 - -1.0 18,090 - +0.5 18,107 - +0.6 18,107 - +0.1 18,160 + BACOVA_00583 0.12 -1.6 18,179 + BACOVA_00583 0.16 +0.4 18,199 + BACOVA_00583 0.19 -0.4 18,219 + BACOVA_00583 0.23 -0.7 18,243 + BACOVA_00583 0.27 -0.1 18,244 - BACOVA_00583 0.27 +0.2 18,297 - BACOVA_00583 0.36 -0.9 18,297 - BACOVA_00583 0.36 +0.7 18,297 - BACOVA_00583 0.36 +0.8 18,397 - BACOVA_00583 0.54 -0.7 18,488 + BACOVA_00583 0.69 -1.6 18,517 + BACOVA_00583 0.75 -1.0 18,553 + BACOVA_00583 0.81 -0.9 18,554 - BACOVA_00583 0.81 +0.1 18,557 + BACOVA_00583 0.82 +0.4 18,575 + BACOVA_00583 0.85 +1.4 18,576 - BACOVA_00583 0.85 -1.6 18,588 - BACOVA_00583 0.87 -0.6 18,588 - BACOVA_00583 0.87 +0.8 18,622 + -1.2 18,623 - -1.2 18,626 + -0.3 18,667 - -2.4 18,667 - +0.8 18,667 - +0.7 18,705 + -2.7 18,705 + -0.6 18,734 + -0.4 18,743 - -1.0 18,870 + BACOVA_00584 0.21 -1.1 18,870 + BACOVA_00584 0.21 +1.5 18,870 + BACOVA_00584 0.21 +0.6 18,912 + BACOVA_00584 0.24 +1.4 18,928 - BACOVA_00584 0.26 -0.6 18,928 - BACOVA_00584 0.26 +1.1 18,996 + BACOVA_00584 0.32 -0.0 19,001 + BACOVA_00584 0.33 -0.3 19,002 - BACOVA_00584 0.33 +0.4 19,057 - BACOVA_00584 0.38 -0.8 19,071 - BACOVA_00584 0.39 -2.1 19,071 - BACOVA_00584 0.39 -0.8 19,113 + BACOVA_00584 0.43 -1.1 19,114 - BACOVA_00584 0.43 +0.5 19,134 + BACOVA_00584 0.45 +0.7 19,135 - BACOVA_00584 0.45 +0.1 19,148 + BACOVA_00584 0.46 -0.2 19,154 - BACOVA_00584 0.47 +1.7 19,167 - BACOVA_00584 0.48 -1.3 19,179 - BACOVA_00584 0.49 -0.7 19,252 - BACOVA_00584 0.56 -1.1 19,326 + BACOVA_00584 0.62 -0.0 19,505 - BACOVA_00584 0.79 -0.2 19,530 + BACOVA_00584 0.81 +2.6 19,542 + BACOVA_00584 0.82 -2.4 19,570 + BACOVA_00584 0.85 +0.6 19,572 + BACOVA_00584 0.85 +0.2 19,573 - BACOVA_00584 0.85 -0.0 19,573 - BACOVA_00584 0.85 +0.0 19,576 - BACOVA_00584 0.85 -1.4 19,674 + -0.9 19,687 + -0.1 19,738 - -0.2 19,739 + +2.0 19,739 + -0.4 19,740 - +0.3 19,740 - -0.5 19,766 + -0.4 19,820 + BACOVA_00585 0.25 -1.8 19,892 + BACOVA_00585 0.48 -2.2 19,892 + BACOVA_00585 0.48 +1.6 20,049 - -0.8 20,076 - +1.2 20,076 - -0.2 20,122 + +1.7 20,122 + -0.7 20,136 + +0.7 20,186 + +0.7 20,303 + -1.2 20,339 + -0.8 20,397 - BACOVA_00586 0.11 +0.6 20,496 - BACOVA_00586 0.14 -0.4 20,496 - BACOVA_00586 0.14 -2.5 20,496 - BACOVA_00586 0.14 +0.5 20,499 + BACOVA_00586 0.14 +0.9 20,500 - BACOVA_00586 0.14 -0.3 20,500 - BACOVA_00586 0.14 -0.2 20,566 - BACOVA_00586 0.16 +0.6 20,571 + BACOVA_00586 0.17 +0.2 20,611 - BACOVA_00586 0.18 -0.5 20,619 + BACOVA_00586 0.18 +0.4 20,619 + BACOVA_00586 0.18 -0.1 20,619 + BACOVA_00586 0.18 +0.5 20,634 - BACOVA_00586 0.19 -0.3 20,634 - BACOVA_00586 0.19 -0.1 20,635 + BACOVA_00586 0.19 +1.4 20,635 + BACOVA_00586 0.19 +0.9 20,636 - BACOVA_00586 0.19 +0.0 20,640 + BACOVA_00586 0.19 +0.9 20,684 + BACOVA_00586 0.20 +0.2 20,694 - BACOVA_00586 0.20 -0.8
Or see this region's nucleotide sequence