Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00274

Experiment: Laminarin from Laminaria digitata 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00272 and BACOVA_00273 are separated by 36 nucleotidesBACOVA_00273 and BACOVA_00274 are separated by 1 nucleotidesBACOVA_00274 and BACOVA_00275 are separated by 11 nucleotidesBACOVA_00275 and BACOVA_00276 are separated by 183 nucleotides BACOVA_00272: BACOVA_00272 - transporter, major facilitator family protein, at 527,014 to 528,249 _00272 BACOVA_00273: BACOVA_00273 - YhcH/YjgK/YiaL family protein, at 528,286 to 528,732 _00273 BACOVA_00274: BACOVA_00274 - N-acylglucosamine 2-epimerase, at 528,734 to 529,930 _00274 BACOVA_00275: BACOVA_00275 - dihydrodipicolinate synthetase family, at 529,942 to 530,706 _00275 BACOVA_00276: BACOVA_00276 - hypothetical protein, at 530,890 to 532,443 _00276 Position (kb) 528 529 530Strain fitness (log2 ratio) -2 -1 0 1 2at 527.898 kb on + strand, within BACOVA_00272at 527.900 kb on + strand, within BACOVA_00272at 527.900 kb on - strand, within BACOVA_00272at 527.941 kb on + strand, within BACOVA_00272at 527.941 kb on + strand, within BACOVA_00272at 527.942 kb on - strand, within BACOVA_00272at 527.963 kb on + strand, within BACOVA_00272at 528.042 kb on + strand, within BACOVA_00272at 528.064 kb on - strand, within BACOVA_00272at 528.064 kb on - strand, within BACOVA_00272at 528.128 kb on - strandat 528.132 kb on + strandat 528.136 kb on + strandat 528.137 kb on - strandat 528.159 kb on + strandat 528.159 kb on + strandat 528.160 kb on - strandat 528.174 kb on + strandat 528.182 kb on + strandat 528.183 kb on - strandat 528.196 kb on + strandat 528.231 kb on - strandat 528.296 kb on - strandat 528.300 kb on + strandat 528.301 kb on - strandat 528.361 kb on + strand, within BACOVA_00273at 528.361 kb on + strand, within BACOVA_00273at 528.402 kb on + strand, within BACOVA_00273at 528.416 kb on + strand, within BACOVA_00273at 528.416 kb on + strand, within BACOVA_00273at 528.417 kb on - strand, within BACOVA_00273at 528.417 kb on - strand, within BACOVA_00273at 528.418 kb on + strand, within BACOVA_00273at 528.418 kb on + strand, within BACOVA_00273at 528.418 kb on + strand, within BACOVA_00273at 528.512 kb on - strand, within BACOVA_00273at 528.526 kb on - strand, within BACOVA_00273at 528.567 kb on + strand, within BACOVA_00273at 528.601 kb on - strand, within BACOVA_00273at 528.619 kb on - strand, within BACOVA_00273at 528.619 kb on - strand, within BACOVA_00273at 528.775 kb on + strandat 528.776 kb on - strandat 528.777 kb on + strandat 528.867 kb on + strand, within BACOVA_00274at 528.907 kb on + strand, within BACOVA_00274at 528.908 kb on - strand, within BACOVA_00274at 528.909 kb on + strand, within BACOVA_00274at 528.910 kb on - strand, within BACOVA_00274at 528.910 kb on - strand, within BACOVA_00274at 528.946 kb on - strand, within BACOVA_00274at 528.969 kb on + strand, within BACOVA_00274at 528.976 kb on - strand, within BACOVA_00274at 529.032 kb on + strand, within BACOVA_00274at 529.072 kb on + strand, within BACOVA_00274at 529.201 kb on + strand, within BACOVA_00274at 529.234 kb on + strand, within BACOVA_00274at 529.242 kb on - strand, within BACOVA_00274at 529.274 kb on + strand, within BACOVA_00274at 529.318 kb on + strand, within BACOVA_00274at 529.319 kb on - strand, within BACOVA_00274at 529.383 kb on - strand, within BACOVA_00274at 529.395 kb on - strand, within BACOVA_00274at 529.429 kb on + strand, within BACOVA_00274at 529.429 kb on + strand, within BACOVA_00274at 529.429 kb on + strand, within BACOVA_00274at 529.430 kb on - strand, within BACOVA_00274at 529.436 kb on - strand, within BACOVA_00274at 529.473 kb on + strand, within BACOVA_00274at 529.520 kb on - strand, within BACOVA_00274at 529.553 kb on + strand, within BACOVA_00274at 529.627 kb on - strand, within BACOVA_00274at 529.630 kb on + strand, within BACOVA_00274at 529.630 kb on + strand, within BACOVA_00274at 529.631 kb on - strand, within BACOVA_00274at 529.654 kb on - strand, within BACOVA_00274at 529.713 kb on - strand, within BACOVA_00274at 529.720 kb on + strand, within BACOVA_00274at 529.723 kb on - strand, within BACOVA_00274at 529.777 kb on + strand, within BACOVA_00274at 529.777 kb on + strand, within BACOVA_00274at 529.778 kb on - strand, within BACOVA_00274at 529.810 kb on + strand, within BACOVA_00274at 529.811 kb on - strandat 529.811 kb on - strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.812 kb on + strandat 529.813 kb on - strandat 529.814 kb on + strandat 529.814 kb on + strandat 529.814 kb on + strandat 529.815 kb on - strandat 529.816 kb on + strandat 529.831 kb on + strandat 529.842 kb on + strandat 529.843 kb on - strandat 529.876 kb on + strandat 529.877 kb on - strandat 529.887 kb on + strandat 529.887 kb on + strandat 529.892 kb on - strandat 529.894 kb on + strandat 529.895 kb on - strandat 529.908 kb on - strandat 529.908 kb on - strandat 529.908 kb on - strandat 529.909 kb on + strandat 529.910 kb on - strandat 529.911 kb on + strandat 529.912 kb on - strandat 529.912 kb on - strandat 529.930 kb on + strandat 529.930 kb on + strandat 530.091 kb on + strand, within BACOVA_00275at 530.191 kb on - strand, within BACOVA_00275at 530.191 kb on - strand, within BACOVA_00275at 530.212 kb on - strand, within BACOVA_00275at 530.295 kb on + strand, within BACOVA_00275at 530.295 kb on + strand, within BACOVA_00275at 530.315 kb on + strand, within BACOVA_00275at 530.316 kb on - strand, within BACOVA_00275at 530.355 kb on + strand, within BACOVA_00275at 530.355 kb on + strand, within BACOVA_00275at 530.356 kb on - strand, within BACOVA_00275at 530.358 kb on - strand, within BACOVA_00275at 530.382 kb on + strand, within BACOVA_00275at 530.419 kb on + strand, within BACOVA_00275at 530.457 kb on - strand, within BACOVA_00275at 530.515 kb on + strand, within BACOVA_00275at 530.630 kb on - strandat 530.634 kb on + strandat 530.634 kb on + strandat 530.685 kb on + strandat 530.706 kb on + strandat 530.706 kb on + strandat 530.706 kb on + strandat 530.708 kb on + strandat 530.708 kb on + strandat 530.709 kb on - strandat 530.709 kb on - strandat 530.758 kb on + strandat 530.764 kb on + strandat 530.774 kb on + strandat 530.793 kb on - strandat 530.862 kb on - strandat 530.887 kb on + strandat 530.891 kb on + strandat 530.891 kb on + strandat 530.920 kb on - strandat 530.923 kb on + strandat 530.923 kb on + strandat 530.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laminarin from Laminaria digitata 2.5 mg/mL (C)
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527,898 + BACOVA_00272 0.72 -0.0
527,900 + BACOVA_00272 0.72 +1.0
527,900 - BACOVA_00272 0.72 +1.7
527,941 + BACOVA_00272 0.75 -0.3
527,941 + BACOVA_00272 0.75 -0.0
527,942 - BACOVA_00272 0.75 -0.6
527,963 + BACOVA_00272 0.77 +1.1
528,042 + BACOVA_00272 0.83 -0.7
528,064 - BACOVA_00272 0.85 -0.4
528,064 - BACOVA_00272 0.85 -0.1
528,128 - -0.7
528,132 + -1.5
528,136 + +0.2
528,137 - +1.5
528,159 + -1.6
528,159 + -1.4
528,160 - -0.3
528,174 + +1.2
528,182 + +0.1
528,183 - -0.5
528,196 + -0.2
528,231 - -1.0
528,296 - -0.8
528,300 + -0.2
528,301 - -2.1
528,361 + BACOVA_00273 0.17 -1.2
528,361 + BACOVA_00273 0.17 +0.2
528,402 + BACOVA_00273 0.26 +0.9
528,416 + BACOVA_00273 0.29 -0.5
528,416 + BACOVA_00273 0.29 -1.0
528,417 - BACOVA_00273 0.29 -1.7
528,417 - BACOVA_00273 0.29 -0.3
528,418 + BACOVA_00273 0.30 +0.4
528,418 + BACOVA_00273 0.30 +0.1
528,418 + BACOVA_00273 0.30 -0.6
528,512 - BACOVA_00273 0.51 -1.6
528,526 - BACOVA_00273 0.54 +0.3
528,567 + BACOVA_00273 0.63 +0.4
528,601 - BACOVA_00273 0.70 -1.5
528,619 - BACOVA_00273 0.74 +0.8
528,619 - BACOVA_00273 0.74 -1.7
528,775 + +1.5
528,776 - +1.1
528,777 + -1.5
528,867 + BACOVA_00274 0.11 -0.5
528,907 + BACOVA_00274 0.14 -1.8
528,908 - BACOVA_00274 0.15 -0.3
528,909 + BACOVA_00274 0.15 -0.8
528,910 - BACOVA_00274 0.15 -1.3
528,910 - BACOVA_00274 0.15 -1.3
528,946 - BACOVA_00274 0.18 +0.8
528,969 + BACOVA_00274 0.20 -0.8
528,976 - BACOVA_00274 0.20 -0.0
529,032 + BACOVA_00274 0.25 +0.7
529,072 + BACOVA_00274 0.28 -0.6
529,201 + BACOVA_00274 0.39 -1.0
529,234 + BACOVA_00274 0.42 -0.9
529,242 - BACOVA_00274 0.42 +0.0
529,274 + BACOVA_00274 0.45 +0.3
529,318 + BACOVA_00274 0.49 -0.6
529,319 - BACOVA_00274 0.49 +0.3
529,383 - BACOVA_00274 0.54 +0.2
529,395 - BACOVA_00274 0.55 +1.0
529,429 + BACOVA_00274 0.58 -1.0
529,429 + BACOVA_00274 0.58 -1.1
529,429 + BACOVA_00274 0.58 -1.7
529,430 - BACOVA_00274 0.58 -1.2
529,436 - BACOVA_00274 0.59 -1.1
529,473 + BACOVA_00274 0.62 -0.1
529,520 - BACOVA_00274 0.66 -0.5
529,553 + BACOVA_00274 0.68 +0.4
529,627 - BACOVA_00274 0.75 +0.7
529,630 + BACOVA_00274 0.75 +0.5
529,630 + BACOVA_00274 0.75 +0.8
529,631 - BACOVA_00274 0.75 -0.3
529,654 - BACOVA_00274 0.77 -1.1
529,713 - BACOVA_00274 0.82 -0.8
529,720 + BACOVA_00274 0.82 +0.9
529,723 - BACOVA_00274 0.83 -1.0
529,777 + BACOVA_00274 0.87 +0.9
529,777 + BACOVA_00274 0.87 +1.4
529,778 - BACOVA_00274 0.87 +1.7
529,810 + BACOVA_00274 0.90 -0.4
529,811 - +1.0
529,811 - +0.2
529,812 + -0.3
529,812 + +0.9
529,812 + +0.3
529,812 + -0.3
529,812 + +0.1
529,812 + -0.0
529,813 - -0.5
529,814 + -1.6
529,814 + +0.3
529,814 + -1.3
529,815 - -1.4
529,816 + +0.9
529,831 + -0.3
529,842 + +0.4
529,843 - +2.4
529,876 + +0.4
529,877 - -0.4
529,887 + +0.7
529,887 + -0.2
529,892 - +1.5
529,894 + +0.9
529,895 - -1.0
529,908 - -1.0
529,908 - +1.1
529,908 - -1.0
529,909 + -0.5
529,910 - -0.6
529,911 + +0.1
529,912 - -0.3
529,912 - +0.8
529,930 + +0.7
529,930 + -0.5
530,091 + BACOVA_00275 0.19 +0.7
530,191 - BACOVA_00275 0.33 -0.6
530,191 - BACOVA_00275 0.33 +1.7
530,212 - BACOVA_00275 0.35 -1.6
530,295 + BACOVA_00275 0.46 -0.6
530,295 + BACOVA_00275 0.46 +1.0
530,315 + BACOVA_00275 0.49 +0.1
530,316 - BACOVA_00275 0.49 -0.4
530,355 + BACOVA_00275 0.54 +0.9
530,355 + BACOVA_00275 0.54 -0.7
530,356 - BACOVA_00275 0.54 +0.1
530,358 - BACOVA_00275 0.54 +0.5
530,382 + BACOVA_00275 0.58 -0.0
530,419 + BACOVA_00275 0.62 +0.8
530,457 - BACOVA_00275 0.67 -0.3
530,515 + BACOVA_00275 0.75 -0.7
530,630 - -0.5
530,634 + -0.2
530,634 + +0.2
530,685 + +0.1
530,706 + +0.5
530,706 + -0.3
530,706 + +1.6
530,708 + -0.2
530,708 + -0.4
530,709 - -0.9
530,709 - -1.3
530,758 + +0.5
530,764 + +1.5
530,774 + +0.4
530,793 - -0.4
530,862 - -0.1
530,887 + -0.2
530,891 + -0.0
530,891 + -0.9
530,920 - -0.7
530,923 + -0.0
530,923 + -1.3
530,924 - -1.5

Or see this region's nucleotide sequence