Strain Fitness in Escherichia fergusonii Becca around EFB2_04355

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,574,965	+		EFB2_04353	0.46	-0.3
4,574,966	-		EFB2_04353	0.46	+0.3
4,574,966	-		EFB2_04353	0.46	+1.3
4,575,071	-		EFB2_04353	0.61	-0.1
4,575,099	-		EFB2_04353	0.65	+0.8
4,575,143	+		EFB2_04353	0.72	-1.1
4,575,143	+		EFB2_04353	0.72	+0.9
4,575,143	+		EFB2_04353	0.72	-1.3
4,575,144	-		EFB2_04353	0.72	-2.3
4,575,144	-		EFB2_04353	0.72	-1.1
4,575,144	-		EFB2_04353	0.72	-2.0
4,575,157	+		EFB2_04353	0.74	+0.3
4,575,157	+		EFB2_04353	0.74	-0.1
4,575,158	-		EFB2_04353	0.74	+2.0
4,575,158	-		EFB2_04353	0.74	-2.7
4,575,158	-		EFB2_04353	0.74	-0.2
4,575,167	+		EFB2_04353	0.75	-0.7
4,575,167	+		EFB2_04353	0.75	-0.6
4,575,168	-		EFB2_04353	0.75	-1.6
4,575,168	-		EFB2_04353	0.75	+0.1
4,575,168	-		EFB2_04353	0.75	-0.1
4,575,226	+		EFB2_04353	0.84	+1.8
4,575,238	+		EFB2_04353	0.85	-0.2
4,575,238	+		EFB2_04353	0.85	+1.3
4,575,239	-		EFB2_04353	0.85	-0.6
4,575,239	-		EFB2_04353	0.85	+0.2
4,575,239	-		EFB2_04353	0.85	-2.7
4,575,298	+				-0.6
4,575,298	+				-0.4
4,575,316	+				-0.3
4,575,316	+				-2.1
4,575,316	+				+0.4
4,575,317	-				-3.5
4,575,317	-				-2.3
4,575,317	-				-2.8
4,575,317	-				-2.9
4,575,317	-				-2.3
4,575,340	+				+1.1
4,575,357	-				-2.3
4,575,360	+				+0.6
4,575,360	+				-0.1
4,575,360	+				-2.0
4,575,361	-				+0.4
4,575,407	+		EFB2_04354	0.12	+0.2
4,575,433	+		EFB2_04354	0.18	+0.3
4,575,434	-		EFB2_04354	0.19	-0.8
4,575,452	-		EFB2_04354	0.23	+0.3
4,575,477	+		EFB2_04354	0.29	+0.1
4,575,477	+		EFB2_04354	0.29	+0.4
4,575,477	+		EFB2_04354	0.29	-0.7
4,575,477	+		EFB2_04354	0.29	-1.0
4,575,477	+		EFB2_04354	0.29	+1.3
4,575,478	-		EFB2_04354	0.30	-0.4
4,575,478	-		EFB2_04354	0.30	-0.5
4,575,478	-		EFB2_04354	0.30	-1.1
4,575,478	-		EFB2_04354	0.30	-2.4
4,575,478	-		EFB2_04354	0.30	-0.2
4,575,478	-		EFB2_04354	0.30	+0.2
4,575,478	-		EFB2_04354	0.30	-1.1
4,575,478	-		EFB2_04354	0.30	-2.2
4,575,478	-		EFB2_04354	0.30	-0.0
4,575,478	-		EFB2_04354	0.30	+1.4
4,575,478	-		EFB2_04354	0.30	+0.6
4,575,478	-		EFB2_04354	0.30	-4.3
4,575,478	-		EFB2_04354	0.30	+1.5
4,575,480	+		EFB2_04354	0.30	+0.2
4,575,480	+		EFB2_04354	0.30	+1.6
4,575,481	-		EFB2_04354	0.30	-0.9
4,575,481	-		EFB2_04354	0.30	-1.5
4,575,481	-		EFB2_04354	0.30	+1.0
4,575,481	-		EFB2_04354	0.30	+0.2
4,575,545	+		EFB2_04354	0.46	-0.1
4,575,546	-		EFB2_04354	0.47	+1.2
4,575,553	+		EFB2_04354	0.48	-0.8
4,575,557	-		EFB2_04354	0.49	-1.5
4,575,578	-		EFB2_04354	0.54	+0.4
4,575,578	-		EFB2_04354	0.54	+0.3
4,575,580	+		EFB2_04354	0.55	-2.1
4,575,580	+		EFB2_04354	0.55	+0.9
4,575,580	+		EFB2_04354	0.55	-1.4
4,575,580	+		EFB2_04354	0.55	+0.4
4,575,580	+		EFB2_04354	0.55	+0.8
4,575,580	+		EFB2_04354	0.55	+0.5
4,575,581	-		EFB2_04354	0.55	-1.5
4,575,581	-		EFB2_04354	0.55	-1.7
4,575,581	-		EFB2_04354	0.55	-1.3
4,575,581	-		EFB2_04354	0.55	-3.7
4,575,585	-		EFB2_04354	0.56	-1.1
4,575,635	-		EFB2_04354	0.69	-0.6
4,575,674	+		EFB2_04354	0.78	-1.1
4,575,695	+		EFB2_04354	0.84	+0.2
4,575,696	-		EFB2_04354	0.84	-2.3
4,575,760	+				+1.3
4,575,760	+				+0.2
4,575,760	+				-1.1
4,575,761	-				+1.2
4,575,761	-				-0.1
4,575,761	-				-0.5
4,575,761	-				-0.1
4,575,762	+				-0.8
4,575,763	-				+2.4
4,575,763	-				-0.8
4,575,763	-				+1.7
4,575,764	-				+0.5
4,575,765	+				+1.6
4,575,765	+				-1.8
4,575,774	+				+1.0
4,575,775	-				+0.7
4,575,775	-				-0.0
4,575,775	-				-0.5
4,575,780	-				+0.0
4,575,801	-				+0.0
4,575,817	+				+1.1
4,575,818	-				+0.1
4,575,821	+				+0.5
4,575,822	-				-1.9
4,575,833	+				-0.4
4,575,834	-				+2.7
4,575,836	-				-0.6
4,575,836	-				-2.6
4,575,874	+				-1.0
4,575,888	+				+0.4
4,575,888	+				+1.5
4,575,888	+				-0.9
4,575,888	+				-1.1
4,575,888	+				-1.4
4,575,889	-				-1.5
4,575,889	-				-3.2
4,575,889	-				+0.4
4,575,889	-				+0.5
4,575,914	+				+1.3
4,575,914	+				-0.3
4,575,915	-				-1.0
4,575,915	-				-0.4
4,576,015	+		EFB2_04355	0.17	-1.1
4,576,015	+		EFB2_04355	0.17	-1.3
4,576,015	+		EFB2_04355	0.17	-1.7
4,576,015	+		EFB2_04355	0.17	-2.3
4,576,015	+		EFB2_04355	0.17	-0.1
4,576,015	+		EFB2_04355	0.17	-2.3
4,576,016	-		EFB2_04355	0.18	-0.4
4,576,016	-		EFB2_04355	0.18	-2.3
4,576,016	-		EFB2_04355	0.18	+1.4
4,576,016	-		EFB2_04355	0.18	+0.5
4,576,016	-		EFB2_04355	0.18	+0.9
4,576,016	-		EFB2_04355	0.18	+0.5
4,576,016	-		EFB2_04355	0.18	-0.2
4,576,071	+		EFB2_04355	0.25	+1.6
4,576,071	+		EFB2_04355	0.25	-0.6
4,576,071	+		EFB2_04355	0.25	+0.2
4,576,071	+		EFB2_04355	0.25	-2.7
4,576,071	+		EFB2_04355	0.25	-1.0
4,576,071	+		EFB2_04355	0.25	+0.5
4,576,072	-		EFB2_04355	0.25	-2.9
4,576,072	-		EFB2_04355	0.25	+0.4
4,576,072	-		EFB2_04355	0.25	-0.4
4,576,072	-		EFB2_04355	0.25	-0.4
4,576,072	-		EFB2_04355	0.25	-2.1
4,576,072	-		EFB2_04355	0.25	-2.5
4,576,072	-		EFB2_04355	0.25	-1.1
4,576,072	-		EFB2_04355	0.25	+2.0
4,576,072	-		EFB2_04355	0.25	+1.5
4,576,072	-		EFB2_04355	0.25	+0.0
4,576,078	+		EFB2_04355	0.26	+0.3
4,576,078	+		EFB2_04355	0.26	-0.4
4,576,078	+		EFB2_04355	0.26	-1.4
4,576,078	+		EFB2_04355	0.26	-2.2
4,576,078	+		EFB2_04355	0.26	-0.3
4,576,078	+		EFB2_04355	0.26	-0.2
4,576,078	+		EFB2_04355	0.26	+1.0
4,576,078	+		EFB2_04355	0.26	+1.4
4,576,078	+		EFB2_04355	0.26	-1.4
4,576,078	+		EFB2_04355	0.26	+0.0
4,576,078	+		EFB2_04355	0.26	+0.0
4,576,078	+		EFB2_04355	0.26	-0.3
4,576,078	+		EFB2_04355	0.26	-3.0
4,576,078	+		EFB2_04355	0.26	-0.3
4,576,078	+		EFB2_04355	0.26	+1.2
4,576,078	+		EFB2_04355	0.26	-1.7
4,576,078	+		EFB2_04355	0.26	+1.3
4,576,078	+		EFB2_04355	0.26	+1.6
4,576,078	+		EFB2_04355	0.26	+2.1
4,576,078	+		EFB2_04355	0.26	+0.0
4,576,078	+		EFB2_04355	0.26	-1.3
4,576,078	+		EFB2_04355	0.26	+0.7
4,576,078	+		EFB2_04355	0.26	-1.2
4,576,079	-		EFB2_04355	0.26	+0.2
4,576,079	-		EFB2_04355	0.26	+0.9
4,576,079	-		EFB2_04355	0.26	+1.9
4,576,079	-		EFB2_04355	0.26	-2.5
4,576,079	-		EFB2_04355	0.26	+1.4
4,576,079	-		EFB2_04355	0.26	-1.7
4,576,079	-		EFB2_04355	0.26	+0.2
4,576,079	-		EFB2_04355	0.26	-1.3
4,576,079	-		EFB2_04355	0.26	-2.5
4,576,079	-		EFB2_04355	0.26	-3.3
4,576,079	-		EFB2_04355	0.26	-1.0
4,576,079	-		EFB2_04355	0.26	+0.3
4,576,079	-		EFB2_04355	0.26	+2.2
4,576,079	-		EFB2_04355	0.26	+0.6
4,576,079	-		EFB2_04355	0.26	-1.0
4,576,079	-		EFB2_04355	0.26	+0.5
4,576,079	-		EFB2_04355	0.26	-0.7
4,576,079	-		EFB2_04355	0.26	-1.3
4,576,079	-		EFB2_04355	0.26	+1.2
4,576,079	-		EFB2_04355	0.26	+0.4
4,576,079	-		EFB2_04355	0.26	-0.3
4,576,079	-		EFB2_04355	0.26	-1.0
4,576,079	-		EFB2_04355	0.26	-3.6
4,576,114	+		EFB2_04355	0.31	+0.1
4,576,114	+		EFB2_04355	0.31	+1.5
4,576,114	+		EFB2_04355	0.31	+1.5
4,576,115	-		EFB2_04355	0.31	+1.3
4,576,115	-		EFB2_04355	0.31	+1.7
4,576,115	-		EFB2_04355	0.31	-0.8
4,576,132	+		EFB2_04355	0.33	+1.7
4,576,132	+		EFB2_04355	0.33	-0.2
4,576,132	+		EFB2_04355	0.33	+0.2
4,576,132	+		EFB2_04355	0.33	+0.5
4,576,132	+		EFB2_04355	0.33	-1.1
4,576,132	+		EFB2_04355	0.33	-0.0
4,576,132	+		EFB2_04355	0.33	+0.5
4,576,132	+		EFB2_04355	0.33	+0.2
4,576,132	+		EFB2_04355	0.33	-0.9
4,576,132	+		EFB2_04355	0.33	-1.1
4,576,132	+		EFB2_04355	0.33	+0.8
4,576,132	+		EFB2_04355	0.33	-2.9
4,576,132	+		EFB2_04355	0.33	-0.6
4,576,132	+		EFB2_04355	0.33	-2.0
4,576,132	+		EFB2_04355	0.33	-1.6
4,576,132	+		EFB2_04355	0.33	-2.9
4,576,132	+		EFB2_04355	0.33	-3.2
4,576,132	+		EFB2_04355	0.33	-0.2
4,576,132	+		EFB2_04355	0.33	+1.0
4,576,132	+		EFB2_04355	0.33	+0.9
4,576,132	+		EFB2_04355	0.33	+0.7
4,576,133	-		EFB2_04355	0.34	-1.4
4,576,133	-		EFB2_04355	0.34	-0.8
4,576,133	-		EFB2_04355	0.34	+0.6
4,576,133	-		EFB2_04355	0.34	+1.2
4,576,133	-		EFB2_04355	0.34	+1.2
4,576,133	-		EFB2_04355	0.34	+0.1
4,576,133	-		EFB2_04355	0.34	-2.1
4,576,133	-		EFB2_04355	0.34	+1.3
4,576,133	-		EFB2_04355	0.34	-1.9
4,576,133	-		EFB2_04355	0.34	+1.0
4,576,133	-		EFB2_04355	0.34	+1.0
4,576,133	-		EFB2_04355	0.34	-1.2
4,576,133	-		EFB2_04355	0.34	+1.0
4,576,133	-		EFB2_04355	0.34	+1.1
4,576,133	-		EFB2_04355	0.34	-1.7
4,576,133	-		EFB2_04355	0.34	+0.2
4,576,153	+		EFB2_04355	0.36	+0.1
4,576,153	+		EFB2_04355	0.36	-1.0
4,576,153	+		EFB2_04355	0.36	+1.2
4,576,154	-		EFB2_04355	0.36	+2.2
4,576,449	+		EFB2_04355	0.77	-2.0
4,576,450	-		EFB2_04355	0.77	+1.5
4,576,450	-		EFB2_04355	0.77	-0.9
4,576,450	-		EFB2_04355	0.77	-1.0
4,576,519	+		EFB2_04355	0.86	-0.2
4,576,519	+		EFB2_04355	0.86	-0.5
4,576,520	-		EFB2_04355	0.86	-1.3
4,576,520	-		EFB2_04355	0.86	+0.8
4,576,520	-		EFB2_04355	0.86	+0.8
4,576,540	+		EFB2_04355	0.89	-2.6
4,576,540	+		EFB2_04355	0.89	-1.0
4,576,541	-		EFB2_04355	0.89	+0.2
4,576,541	-		EFB2_04355	0.89	+0.2
4,576,541	-		EFB2_04355	0.89	-0.6
4,576,619	+				+0.3
4,576,619	+				-0.1
4,576,620	-				+1.5
4,576,620	-				+0.6
4,576,620	-				+0.3
4,576,624	+				-0.5
4,576,624	+				+0.6
4,576,624	+				-1.0
4,576,624	+				+0.8
4,576,625	-				-0.4
4,576,625	-				-0.3
4,576,625	-				-2.7
4,576,630	+				+1.0
4,576,631	+				-0.5
4,576,632	-				+0.7
4,576,632	-				+0.8
4,576,632	-				-1.1
4,576,632	-				+1.1
4,576,632	-				-0.2
4,576,632	-				-0.0
4,576,635	+				-2.6
4,576,636	-				+0.6
4,576,669	+				-1.7
4,576,675	+				+0.0
4,576,676	-				+0.3
4,576,704	-				-0.5
4,576,760	+				+0.4
4,576,946	-				-2.8
4,576,984	+		EFB2_04356	0.11	-0.4
4,576,984	+		EFB2_04356	0.11	-0.9
4,576,984	+		EFB2_04356	0.11	+0.6
4,576,985	-		EFB2_04356	0.11	-0.1
4,577,008	+		EFB2_04356	0.12	+2.0
4,577,008	+		EFB2_04356	0.12	+1.7
4,577,008	+		EFB2_04356	0.12	+0.0
4,577,008	+		EFB2_04356	0.12	+0.2
4,577,008	+		EFB2_04356	0.12	-2.1
4,577,008	+		EFB2_04356	0.12	-0.1
4,577,008	+		EFB2_04356	0.12	-2.2
4,577,008	+		EFB2_04356	0.12	+0.7
4,577,008	+		EFB2_04356	0.12	+1.2
4,577,009	-		EFB2_04356	0.12	-0.6
4,577,009	-		EFB2_04356	0.12	-0.0
4,577,011	+		EFB2_04356	0.12	+1.1
4,577,012	-		EFB2_04356	0.12	-0.1
4,577,052	+		EFB2_04356	0.14	-0.8
4,577,052	+		EFB2_04356	0.14	+0.1
4,577,052	+		EFB2_04356	0.14	-3.1
4,577,052	+		EFB2_04356	0.14	+0.6
4,577,053	-		EFB2_04356	0.14	-2.1
4,577,053	-		EFB2_04356	0.14	+0.9
4,577,053	-		EFB2_04356	0.14	-0.2
4,577,053	-		EFB2_04356	0.14	+0.6
4,577,091	-		EFB2_04356	0.16	+0.2
4,577,106	+		EFB2_04356	0.16	+0.9
4,577,106	+		EFB2_04356	0.16	+1.7
4,577,106	+		EFB2_04356	0.16	-0.4
4,577,106	+		EFB2_04356	0.16	+0.0
4,577,106	+		EFB2_04356	0.16	-2.1
4,577,107	-		EFB2_04356	0.16	-0.1
4,577,109	+		EFB2_04356	0.16	-1.0
4,577,109	+		EFB2_04356	0.16	+0.8
4,577,109	+		EFB2_04356	0.16	-1.0
4,577,109	+		EFB2_04356	0.16	-3.1
4,577,109	+		EFB2_04356	0.16	-1.5
4,577,109	+		EFB2_04356	0.16	-0.5
4,577,109	+		EFB2_04356	0.16	-1.4
4,577,109	+		EFB2_04356	0.16	-0.3
4,577,109	+		EFB2_04356	0.16	-1.0
4,577,109	+		EFB2_04356	0.16	+1.4
4,577,109	+		EFB2_04356	0.16	+0.5
4,577,110	-		EFB2_04356	0.16	+0.8
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