Strain Fitness in Escherichia fergusonii Becca around EFB2_04319

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,543,871	-				-0.1
4,543,900	+		EFB2_04318	0.11	-0.7
4,543,910	+		EFB2_04318	0.13	-2.2
4,543,910	+		EFB2_04318	0.13	-0.5
4,543,911	-		EFB2_04318	0.13	-0.7
4,543,916	+		EFB2_04318	0.13	+1.2
4,543,917	-		EFB2_04318	0.13	-3.4
4,543,917	-		EFB2_04318	0.13	+0.8
4,543,917	-		EFB2_04318	0.13	+1.0
4,543,917	-		EFB2_04318	0.13	+1.3
4,543,983	+		EFB2_04318	0.20	+0.8
4,544,016	+		EFB2_04318	0.23	-3.6
4,544,016	+		EFB2_04318	0.23	-0.0
4,544,016	+		EFB2_04318	0.23	-0.5
4,544,016	+		EFB2_04318	0.23	-0.8
4,544,016	+		EFB2_04318	0.23	-0.5
4,544,016	+		EFB2_04318	0.23	-1.0
4,544,016	+		EFB2_04318	0.23	-0.2
4,544,016	+		EFB2_04318	0.23	+1.7
4,544,016	+		EFB2_04318	0.23	+0.1
4,544,016	+		EFB2_04318	0.23	+0.5
4,544,016	+		EFB2_04318	0.23	-0.1
4,544,016	+		EFB2_04318	0.23	-1.4
4,544,016	+		EFB2_04318	0.23	+0.8
4,544,016	+		EFB2_04318	0.23	-0.2
4,544,016	+		EFB2_04318	0.23	+0.5
4,544,016	+		EFB2_04318	0.23	-0.9
4,544,016	+		EFB2_04318	0.23	+0.3
4,544,016	+		EFB2_04318	0.23	-2.7
4,544,016	+		EFB2_04318	0.23	+0.7
4,544,016	+		EFB2_04318	0.23	+0.2
4,544,016	+		EFB2_04318	0.23	-0.4
4,544,016	+		EFB2_04318	0.23	+0.3
4,544,016	+		EFB2_04318	0.23	-0.9
4,544,016	+		EFB2_04318	0.23	+1.2
4,544,017	-		EFB2_04318	0.24	+0.6
4,544,017	-		EFB2_04318	0.24	-3.1
4,544,017	-		EFB2_04318	0.24	+1.9
4,544,017	-		EFB2_04318	0.24	-0.9
4,544,017	-		EFB2_04318	0.24	+0.8
4,544,017	-		EFB2_04318	0.24	-0.8
4,544,017	-		EFB2_04318	0.24	-0.8
4,544,017	-		EFB2_04318	0.24	-3.2
4,544,017	-		EFB2_04318	0.24	-3.9
4,544,017	-		EFB2_04318	0.24	+2.1
4,544,017	-		EFB2_04318	0.24	+0.3
4,544,017	-		EFB2_04318	0.24	+0.2
4,544,017	-		EFB2_04318	0.24	-0.3
4,544,017	-		EFB2_04318	0.24	+0.8
4,544,017	-		EFB2_04318	0.24	-1.5
4,544,017	-		EFB2_04318	0.24	+0.2
4,544,017	-		EFB2_04318	0.24	+0.5
4,544,017	-		EFB2_04318	0.24	-0.6
4,544,017	-		EFB2_04318	0.24	-0.1
4,544,017	-		EFB2_04318	0.24	-0.6
4,544,017	-		EFB2_04318	0.24	-2.5
4,544,017	-		EFB2_04318	0.24	+2.0
4,544,017	-		EFB2_04318	0.24	+2.1
4,544,020	+		EFB2_04318	0.24	+1.1
4,544,020	+		EFB2_04318	0.24	+0.0
4,544,020	+		EFB2_04318	0.24	+0.6
4,544,020	+		EFB2_04318	0.24	+0.9
4,544,020	+		EFB2_04318	0.24	+0.1
4,544,020	+		EFB2_04318	0.24	-1.2
4,544,020	+		EFB2_04318	0.24	-1.9
4,544,020	+		EFB2_04318	0.24	-0.1
4,544,020	+		EFB2_04318	0.24	-2.8
4,544,020	+		EFB2_04318	0.24	-0.4
4,544,020	+		EFB2_04318	0.24	+0.3
4,544,021	-		EFB2_04318	0.24	-2.5
4,544,021	-		EFB2_04318	0.24	+0.9
4,544,021	-		EFB2_04318	0.24	-1.2
4,544,021	-		EFB2_04318	0.24	-0.7
4,544,021	-		EFB2_04318	0.24	-0.1
4,544,021	-		EFB2_04318	0.24	-0.8
4,544,021	-		EFB2_04318	0.24	+0.1
4,544,023	+		EFB2_04318	0.24	-0.1
4,544,023	+		EFB2_04318	0.24	+0.8
4,544,023	+		EFB2_04318	0.24	+0.1
4,544,023	+		EFB2_04318	0.24	+0.0
4,544,023	+		EFB2_04318	0.24	+0.4
4,544,023	+		EFB2_04318	0.24	+1.3
4,544,024	-		EFB2_04318	0.24	+0.2
4,544,024	-		EFB2_04318	0.24	-0.2
4,544,024	-		EFB2_04318	0.24	+0.7
4,544,024	-		EFB2_04318	0.24	-1.6
4,544,024	-		EFB2_04318	0.24	+1.3
4,544,024	-		EFB2_04318	0.24	-0.9
4,544,052	+		EFB2_04318	0.27	+1.2
4,544,052	+		EFB2_04318	0.27	+0.8
4,544,052	+		EFB2_04318	0.27	-1.6
4,544,125	+		EFB2_04318	0.35	+0.5
4,544,125	+		EFB2_04318	0.35	-0.0
4,544,125	+		EFB2_04318	0.35	-0.0
4,544,125	+		EFB2_04318	0.35	-2.6
4,544,126	-		EFB2_04318	0.35	+1.1
4,544,126	-		EFB2_04318	0.35	+0.9
4,544,126	-		EFB2_04318	0.35	+2.2
4,544,126	-		EFB2_04318	0.35	+0.8
4,544,128	-		EFB2_04318	0.35	-1.1
4,544,181	+		EFB2_04318	0.41	+1.3
4,544,181	+		EFB2_04318	0.41	-2.9
4,544,182	-		EFB2_04318	0.41	-3.2
4,544,182	-		EFB2_04318	0.41	-0.4
4,544,182	-		EFB2_04318	0.41	-0.9
4,544,208	+		EFB2_04318	0.43	-1.3
4,544,208	+		EFB2_04318	0.43	-0.1
4,544,209	-		EFB2_04318	0.43	+0.4
4,544,209	-		EFB2_04318	0.43	-0.4
4,544,219	+		EFB2_04318	0.45	-0.4
4,544,220	-		EFB2_04318	0.45	+0.1
4,544,220	-		EFB2_04318	0.45	-3.0
4,544,254	+		EFB2_04318	0.48	-2.9
4,544,254	+		EFB2_04318	0.48	+1.5
4,544,255	-		EFB2_04318	0.48	-0.7
4,544,256	+		EFB2_04318	0.48	-0.2
4,544,256	+		EFB2_04318	0.48	+0.2
4,544,256	+		EFB2_04318	0.48	+1.0
4,544,256	+		EFB2_04318	0.48	-1.1
4,544,256	+		EFB2_04318	0.48	+0.4
4,544,256	+		EFB2_04318	0.48	-0.0
4,544,256	+		EFB2_04318	0.48	-2.2
4,544,256	+		EFB2_04318	0.48	+1.2
4,544,256	+		EFB2_04318	0.48	-0.1
4,544,256	+		EFB2_04318	0.48	+1.4
4,544,256	+		EFB2_04318	0.48	+2.2
4,544,257	-		EFB2_04318	0.48	-1.1
4,544,257	-		EFB2_04318	0.48	+0.1
4,544,257	-		EFB2_04318	0.48	-2.5
4,544,257	-		EFB2_04318	0.48	+0.5
4,544,273	+		EFB2_04318	0.50	+0.9
4,544,273	+		EFB2_04318	0.50	+0.1
4,544,274	-		EFB2_04318	0.50	-0.5
4,544,279	+		EFB2_04318	0.51	+0.9
4,544,279	+		EFB2_04318	0.51	+0.4
4,544,280	-		EFB2_04318	0.51	-1.1
4,544,280	-		EFB2_04318	0.51	+1.3
4,544,280	-		EFB2_04318	0.51	-2.0
4,544,305	+		EFB2_04318	0.53	+0.6
4,544,305	+		EFB2_04318	0.53	-2.5
4,544,305	+		EFB2_04318	0.53	-0.4
4,544,305	+		EFB2_04318	0.53	+1.1
4,544,305	+		EFB2_04318	0.53	+0.6
4,544,305	+		EFB2_04318	0.53	-1.5
4,544,305	+		EFB2_04318	0.53	+0.4
4,544,305	+		EFB2_04318	0.53	+0.8
4,544,305	+		EFB2_04318	0.53	-3.7
4,544,305	+		EFB2_04318	0.53	-2.5
4,544,305	+		EFB2_04318	0.53	+1.8
4,544,305	+		EFB2_04318	0.53	+2.3
4,544,305	+		EFB2_04318	0.53	-0.7
4,544,305	+		EFB2_04318	0.53	+0.5
4,544,305	+		EFB2_04318	0.53	+0.9
4,544,305	+		EFB2_04318	0.53	-0.6
4,544,305	+		EFB2_04318	0.53	-0.1
4,544,306	-		EFB2_04318	0.54	-0.2
4,544,306	-		EFB2_04318	0.54	-1.2
4,544,306	-		EFB2_04318	0.54	-0.2
4,544,306	-		EFB2_04318	0.54	-3.5
4,544,306	-		EFB2_04318	0.54	-0.6
4,544,306	-		EFB2_04318	0.54	-0.6
4,544,306	-		EFB2_04318	0.54	+0.6
4,544,306	-		EFB2_04318	0.54	-0.6
4,544,306	-		EFB2_04318	0.54	+1.0
4,544,306	-		EFB2_04318	0.54	+2.2
4,544,306	-		EFB2_04318	0.54	-0.0
4,544,306	-		EFB2_04318	0.54	+1.3
4,544,306	-		EFB2_04318	0.54	-0.4
4,544,306	-		EFB2_04318	0.54	-1.2
4,544,306	-		EFB2_04318	0.54	+0.5
4,544,410	+		EFB2_04318	0.64	+0.4
4,544,411	-		EFB2_04318	0.64	+0.6
4,544,425	+		EFB2_04318	0.66	-0.1
4,544,436	+		EFB2_04318	0.67	-0.2
4,544,437	-		EFB2_04318	0.67	+2.5
4,544,437	-		EFB2_04318	0.67	-0.2
4,544,437	-		EFB2_04318	0.67	-0.6
4,544,437	-		EFB2_04318	0.67	+2.0
4,544,487	+		EFB2_04318	0.72	-1.6
4,544,487	+		EFB2_04318	0.72	-1.6
4,544,487	+		EFB2_04318	0.72	+0.3
4,544,487	+		EFB2_04318	0.72	-0.4
4,544,487	+		EFB2_04318	0.72	+1.1
4,544,487	+		EFB2_04318	0.72	+0.3
4,544,488	-		EFB2_04318	0.72	-0.2
4,544,488	-		EFB2_04318	0.72	-1.4
4,544,488	-		EFB2_04318	0.72	+0.1
4,544,490	+		EFB2_04318	0.73	-1.4
4,544,490	+		EFB2_04318	0.73	+0.3
4,544,490	+		EFB2_04318	0.73	+0.9
4,544,491	-		EFB2_04318	0.73	-2.2
4,544,491	-		EFB2_04318	0.73	-1.1
4,544,620	+		EFB2_04318	0.86	+1.3
4,544,620	+		EFB2_04318	0.86	-0.8
4,544,621	-		EFB2_04318	0.86	+0.8
4,544,621	-		EFB2_04318	0.86	-0.1
4,544,621	-		EFB2_04318	0.86	-0.8
4,544,621	-		EFB2_04318	0.86	+0.6
4,544,621	-		EFB2_04318	0.86	+1.2
4,544,630	+		EFB2_04318	0.87	+0.7
4,544,631	-		EFB2_04318	0.87	+0.8
4,544,681	+				+0.2
4,544,682	-				-0.4
4,544,682	-				+0.2
4,544,730	-				-1.1
4,544,771	+				+0.2
4,544,771	+				-2.7
4,544,771	+				+0.4
4,544,771	+				-0.1
4,544,772	-				+0.6
4,544,772	-				-0.2
4,544,775	+				+0.4
4,544,775	+				+0.9
4,544,775	+				+0.5
4,544,775	+				-0.1
4,544,775	+				+0.4
4,544,776	-				+0.6
4,544,776	-				-2.0
4,544,776	-				-1.4
4,544,776	-				+1.6
4,544,776	-				-0.1
4,544,776	-				+0.3
4,544,786	+				+0.9
4,544,786	+				+1.3
4,544,786	+				+1.5
4,544,786	+				+0.5
4,544,787	-				+1.7
4,544,787	-				-3.2
4,544,790	+				-0.5
4,544,790	+				+0.8
4,544,790	+				+0.9
4,544,790	+				+0.3
4,544,790	+				+1.2
4,544,791	-				-0.2
4,544,791	-				+0.4
4,544,791	-				-2.6
4,544,791	-				+0.3
4,544,791	-				-0.8
4,544,797	+				-1.2
4,544,797	+				-3.6
4,544,798	-				+0.7
4,544,798	-				-0.4
4,544,799	+				+0.5
4,544,799	+				+3.2
4,544,799	+				-0.0
4,544,799	+				-1.1
4,544,799	+				-1.7
4,544,800	-				+0.2
4,544,800	-				-0.5
4,544,843	+				+1.1
4,544,843	+				-0.4
4,544,844	-				+0.4
4,544,844	-				+0.4
4,544,854	+				-2.8
4,544,855	-				+0.3
4,544,855	-				+1.4
4,544,855	-				+0.6
4,544,861	+				-0.7
4,544,861	+				-0.3
4,544,861	+				+0.6
4,544,861	+				+1.8
4,544,861	+				+0.9
4,544,861	+				-1.1
4,544,861	+				-3.1
4,544,862	-				+0.0
4,544,862	-				-1.6
4,544,862	-				-2.5
4,544,862	-				-1.1
4,544,862	-				-0.8
4,544,862	-				+1.0
4,544,862	-				+0.0
4,544,862	-				-1.6
4,544,862	-				-0.5
4,544,869	-				-0.3
4,544,884	+				+1.7
4,544,884	+				+1.6
4,544,884	+				-2.1
4,544,884	+				+1.2
4,544,884	+				-0.4
4,544,885	-				+0.3
4,544,885	-				+0.4
4,544,885	-				-3.3
4,544,885	-				-0.9
4,544,903	+				+0.5
4,544,903	+				+1.4
4,544,903	+				-2.3
4,544,904	-				-3.1
4,544,904	-				+0.8
4,544,904	-				+0.5
4,544,904	-				-2.4
4,544,904	-				+0.9
4,544,930	+		EFB2_04319	0.10	+0.9
4,544,930	+		EFB2_04319	0.10	-0.4
4,544,931	-		EFB2_04319	0.10	+0.7
4,544,934	+		EFB2_04319	0.11	-0.1
4,544,934	+		EFB2_04319	0.11	+0.3
4,544,934	+		EFB2_04319	0.11	+0.3
4,544,934	+		EFB2_04319	0.11	+1.9
4,544,934	+		EFB2_04319	0.11	-0.1
4,544,934	+		EFB2_04319	0.11	+1.1
4,544,934	+		EFB2_04319	0.11	+0.8
4,544,934	+		EFB2_04319	0.11	-1.0
4,544,934	+		EFB2_04319	0.11	+0.2
4,544,934	+		EFB2_04319	0.11	-0.2
4,544,934	+		EFB2_04319	0.11	+2.0
4,544,934	+		EFB2_04319	0.11	+0.2
4,544,935	-		EFB2_04319	0.11	-1.4
4,544,935	-		EFB2_04319	0.11	-1.9
4,544,935	-		EFB2_04319	0.11	+0.6
4,544,935	-		EFB2_04319	0.11	-1.0
4,544,935	-		EFB2_04319	0.11	-0.3
4,544,935	-		EFB2_04319	0.11	-0.4
4,544,935	-		EFB2_04319	0.11	+0.9
4,544,935	-		EFB2_04319	0.11	+0.4
4,544,935	-		EFB2_04319	0.11	-2.4
4,544,935	-		EFB2_04319	0.11	-1.3
4,544,935	-		EFB2_04319	0.11	+0.2
4,544,935	-		EFB2_04319	0.11	-3.3
4,544,935	-		EFB2_04319	0.11	-2.3
4,544,935	-		EFB2_04319	0.11	-2.0
4,544,935	-		EFB2_04319	0.11	+1.2
4,544,935	-		EFB2_04319	0.11	-0.6
4,544,935	-		EFB2_04319	0.11	-2.9
4,544,936	-		EFB2_04319	0.11	-0.2
4,544,939	+		EFB2_04319	0.12	-1.6
4,544,939	+		EFB2_04319	0.12	-1.6
4,544,940	-		EFB2_04319	0.12	-1.1
4,544,940	-		EFB2_04319	0.12	+1.5
4,544,946	+		EFB2_04319	0.13	-0.1
4,544,946	+		EFB2_04319	0.13	-0.2
4,544,946	+		EFB2_04319	0.13	-0.3
4,544,947	-		EFB2_04319	0.13	-3.4
4,544,947	-		EFB2_04319	0.13	+1.3
4,544,947	-		EFB2_04319	0.13	-0.0
4,544,947	-		EFB2_04319	0.13	+1.5
4,544,990	+		EFB2_04319	0.19	-1.3
4,544,990	+		EFB2_04319	0.19	-0.2
4,544,990	+		EFB2_04319	0.19	-0.2
4,544,990	+		EFB2_04319	0.19	-2.6
4,544,990	+		EFB2_04319	0.19	-0.7
4,544,990	+		EFB2_04319	0.19	-0.3
4,544,991	-		EFB2_04319	0.19	+1.5
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