Strain Fitness in Escherichia fergusonii Becca around EFB2_04049

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,257,714	+				-1.6
4,257,714	+				-1.4
4,257,714	+				-0.1
4,257,715	-				+0.3
4,257,715	-				-2.1
4,257,721	+				+0.2
4,257,729	+				+0.6
4,257,730	-				+0.0
4,257,730	-				+1.5
4,257,751	-				+1.6
4,257,751	-				-2.5
4,257,769	-				+0.6
4,257,769	-				-1.2
4,257,771	+				-0.1
4,257,772	-				+0.0
4,257,779	+				-0.2
4,257,779	+				+0.9
4,257,779	+				+2.3
4,257,779	+				-0.5
4,257,779	+				-0.8
4,257,780	-				+1.3
4,257,817	+				+0.3
4,257,817	+				-0.5
4,257,817	+				+0.8
4,257,818	-				+1.8
4,257,822	+				+1.1
4,257,822	+				-0.2
4,257,840	+				-1.5
4,257,841	-				-1.4
4,257,854	+				+2.3
4,257,854	+				+1.3
4,257,854	+				-0.1
4,257,854	+				+0.5
4,257,855	-				+0.3
4,257,855	-				+1.5
4,257,855	-				-3.9
4,257,902	+				-3.5
4,257,902	+				+1.4
4,257,902	+				-0.2
4,257,902	+				-0.9
4,257,902	+				+0.3
4,257,903	-				-0.7
4,257,903	-				-0.6
4,257,920	-		EFB2_04048	0.11	-2.5
4,257,920	-		EFB2_04048	0.11	-0.6
4,257,935	+		EFB2_04048	0.13	-1.3
4,257,935	+		EFB2_04048	0.13	+0.1
4,257,935	+		EFB2_04048	0.13	+0.2
4,257,935	+		EFB2_04048	0.13	-0.2
4,257,935	+		EFB2_04048	0.13	-1.5
4,257,935	+		EFB2_04048	0.13	-1.3
4,257,935	+		EFB2_04048	0.13	+0.0
4,257,936	-		EFB2_04048	0.13	-2.0
4,257,936	-		EFB2_04048	0.13	+2.2
4,257,936	-		EFB2_04048	0.13	-0.2
4,257,936	-		EFB2_04048	0.13	-1.0
4,257,936	-		EFB2_04048	0.13	+2.1
4,257,948	+		EFB2_04048	0.14	-1.7
4,257,969	+		EFB2_04048	0.17	-3.7
4,257,969	+		EFB2_04048	0.17	+1.8
4,257,969	+		EFB2_04048	0.17	-3.5
4,257,970	-		EFB2_04048	0.17	-0.3
4,257,970	-		EFB2_04048	0.17	+1.4
4,257,970	-		EFB2_04048	0.17	+0.9
4,257,970	-		EFB2_04048	0.17	+1.2
4,257,979	+		EFB2_04048	0.18	+0.7
4,257,980	-		EFB2_04048	0.18	-0.8
4,257,980	-		EFB2_04048	0.18	+0.0
4,257,980	-		EFB2_04048	0.18	+1.0
4,257,980	-		EFB2_04048	0.18	+1.0
4,257,980	-		EFB2_04048	0.18	+1.0
4,257,981	+		EFB2_04048	0.18	-2.2
4,257,981	+		EFB2_04048	0.18	-2.7
4,257,981	+		EFB2_04048	0.18	+1.0
4,257,981	+		EFB2_04048	0.18	-1.0
4,257,981	+		EFB2_04048	0.18	-1.2
4,257,981	+		EFB2_04048	0.18	-2.0
4,257,982	-		EFB2_04048	0.18	+1.1
4,257,982	-		EFB2_04048	0.18	+0.8
4,257,982	-		EFB2_04048	0.18	+0.3
4,258,019	+		EFB2_04048	0.23	-0.4
4,258,020	-		EFB2_04048	0.23	+0.4
4,258,086	+		EFB2_04048	0.30	-0.3
4,258,161	+		EFB2_04048	0.39	+0.1
4,258,194	+		EFB2_04048	0.43	+0.8
4,258,195	-		EFB2_04048	0.43	+0.2
4,258,195	-		EFB2_04048	0.43	-2.6
4,258,195	-		EFB2_04048	0.43	-2.9
4,258,227	+		EFB2_04048	0.46	+1.1
4,258,227	+		EFB2_04048	0.46	-0.8
4,258,228	-		EFB2_04048	0.47	-2.7
4,258,228	-		EFB2_04048	0.47	-2.1
4,258,245	+		EFB2_04048	0.49	-1.5
4,258,255	+		EFB2_04048	0.50	-3.3
4,258,255	+		EFB2_04048	0.50	-3.0
4,258,255	+		EFB2_04048	0.50	-0.8
4,258,255	+		EFB2_04048	0.50	+0.8
4,258,255	+		EFB2_04048	0.50	+0.7
4,258,255	+		EFB2_04048	0.50	+0.3
4,258,255	+		EFB2_04048	0.50	+0.7
4,258,255	+		EFB2_04048	0.50	-2.5
4,258,255	+		EFB2_04048	0.50	+0.9
4,258,256	-		EFB2_04048	0.50	-2.1
4,258,256	-		EFB2_04048	0.50	-0.3
4,258,256	-		EFB2_04048	0.50	-0.2
4,258,256	-		EFB2_04048	0.50	-0.6
4,258,256	-		EFB2_04048	0.50	-2.1
4,258,256	-		EFB2_04048	0.50	+2.3
4,258,256	-		EFB2_04048	0.50	+0.3
4,258,256	-		EFB2_04048	0.50	-2.3
4,258,256	-		EFB2_04048	0.50	+0.7
4,258,256	-		EFB2_04048	0.50	+0.3
4,258,256	-		EFB2_04048	0.50	+1.0
4,258,256	-		EFB2_04048	0.50	-1.2
4,258,256	-		EFB2_04048	0.50	-0.5
4,258,256	-		EFB2_04048	0.50	+2.7
4,258,256	-		EFB2_04048	0.50	-0.0
4,258,256	-		EFB2_04048	0.50	+1.0
4,258,256	-		EFB2_04048	0.50	-0.7
4,258,256	-		EFB2_04048	0.50	-0.1
4,258,357	+		EFB2_04048	0.61	+1.2
4,258,357	+		EFB2_04048	0.61	+2.4
4,258,358	-		EFB2_04048	0.61	+0.1
4,258,389	+		EFB2_04048	0.65	-0.1
4,258,414	+		EFB2_04048	0.68	-0.9
4,258,414	+		EFB2_04048	0.68	-3.4
4,258,414	+		EFB2_04048	0.68	-0.5
4,258,414	+		EFB2_04048	0.68	+0.7
4,258,414	+		EFB2_04048	0.68	-0.5
4,258,414	+		EFB2_04048	0.68	+1.0
4,258,415	-		EFB2_04048	0.68	+1.0
4,258,415	-		EFB2_04048	0.68	-1.6
4,258,415	-		EFB2_04048	0.68	+0.7
4,258,415	-		EFB2_04048	0.68	-2.9
4,258,415	-		EFB2_04048	0.68	+0.9
4,258,450	+		EFB2_04048	0.72	+0.4
4,258,450	+		EFB2_04048	0.72	-0.3
4,258,450	+		EFB2_04048	0.72	+0.1
4,258,450	+		EFB2_04048	0.72	+0.7
4,258,450	+		EFB2_04048	0.72	+0.1
4,258,450	+		EFB2_04048	0.72	+1.0
4,258,450	+		EFB2_04048	0.72	+0.4
4,258,450	+		EFB2_04048	0.72	-0.4
4,258,450	+		EFB2_04048	0.72	-3.9
4,258,450	+		EFB2_04048	0.72	-2.2
4,258,450	+		EFB2_04048	0.72	-0.5
4,258,450	+		EFB2_04048	0.72	-0.1
4,258,451	-		EFB2_04048	0.72	+0.2
4,258,451	-		EFB2_04048	0.72	+0.3
4,258,451	-		EFB2_04048	0.72	+0.9
4,258,451	-		EFB2_04048	0.72	-1.2
4,258,451	-		EFB2_04048	0.72	+1.2
4,258,451	-		EFB2_04048	0.72	+0.5
4,258,451	-		EFB2_04048	0.72	-0.4
4,258,451	-		EFB2_04048	0.72	-0.7
4,258,451	-		EFB2_04048	0.72	-3.0
4,258,451	-		EFB2_04048	0.72	+0.3
4,258,451	-		EFB2_04048	0.72	-1.3
4,258,454	+		EFB2_04048	0.73	-0.6
4,258,454	+		EFB2_04048	0.73	-3.8
4,258,454	+		EFB2_04048	0.73	-2.1
4,258,454	+		EFB2_04048	0.73	+0.5
4,258,454	+		EFB2_04048	0.73	+0.4
4,258,454	+		EFB2_04048	0.73	-1.6
4,258,454	+		EFB2_04048	0.73	+0.2
4,258,454	+		EFB2_04048	0.73	-1.2
4,258,454	+		EFB2_04048	0.73	-0.4
4,258,454	+		EFB2_04048	0.73	-0.0
4,258,454	+		EFB2_04048	0.73	-0.2
4,258,454	+		EFB2_04048	0.73	-1.8
4,258,454	+		EFB2_04048	0.73	-3.1
4,258,455	-		EFB2_04048	0.73	-2.2
4,258,455	-		EFB2_04048	0.73	+0.3
4,258,455	-		EFB2_04048	0.73	+0.2
4,258,455	-		EFB2_04048	0.73	+0.2
4,258,455	-		EFB2_04048	0.73	-0.9
4,258,455	-		EFB2_04048	0.73	+0.3
4,258,455	-		EFB2_04048	0.73	-1.1
4,258,455	-		EFB2_04048	0.73	+1.0
4,258,455	-		EFB2_04048	0.73	+0.3
4,258,455	-		EFB2_04048	0.73	+1.2
4,258,455	-		EFB2_04048	0.73	-3.3
4,258,455	-		EFB2_04048	0.73	-1.4
4,258,455	-		EFB2_04048	0.73	-3.0
4,258,455	-		EFB2_04048	0.73	-1.2
4,258,455	-		EFB2_04048	0.73	-2.0
4,258,455	-		EFB2_04048	0.73	+0.6
4,258,455	-		EFB2_04048	0.73	-2.2
4,258,455	-		EFB2_04048	0.73	+0.2
4,258,455	-		EFB2_04048	0.73	+1.6
4,258,455	-		EFB2_04048	0.73	-1.6
4,258,455	-		EFB2_04048	0.73	+1.7
4,258,492	+		EFB2_04048	0.77	-0.3
4,258,492	+		EFB2_04048	0.77	-0.2
4,258,493	-		EFB2_04048	0.77	-2.4
4,258,493	-		EFB2_04048	0.77	-0.0
4,258,493	-		EFB2_04048	0.77	+0.1
4,258,493	-		EFB2_04048	0.77	+1.1
4,258,493	-		EFB2_04048	0.77	+0.6
4,258,493	-		EFB2_04048	0.77	+0.6
4,258,493	-		EFB2_04048	0.77	+0.1
4,258,503	+		EFB2_04048	0.78	-0.0
4,258,503	+		EFB2_04048	0.78	+0.1
4,258,503	+		EFB2_04048	0.78	-2.7
4,258,503	+		EFB2_04048	0.78	+1.7
4,258,503	+		EFB2_04048	0.78	-2.1
4,258,504	-		EFB2_04048	0.78	+0.4
4,258,504	-		EFB2_04048	0.78	-0.1
4,258,504	-		EFB2_04048	0.78	+0.1
4,258,504	-		EFB2_04048	0.78	+1.0
4,258,504	-		EFB2_04048	0.78	-0.3
4,258,504	-		EFB2_04048	0.78	+0.2
4,258,507	+		EFB2_04048	0.79	+1.7
4,258,507	+		EFB2_04048	0.79	-0.3
4,258,507	+		EFB2_04048	0.79	+0.6
4,258,507	+		EFB2_04048	0.79	-0.1
4,258,507	+		EFB2_04048	0.79	-0.2
4,258,507	+		EFB2_04048	0.79	+0.4
4,258,507	+		EFB2_04048	0.79	+1.3
4,258,507	+		EFB2_04048	0.79	-1.9
4,258,507	+		EFB2_04048	0.79	+1.6
4,258,508	-		EFB2_04048	0.79	-3.8
4,258,508	-		EFB2_04048	0.79	+0.3
4,258,508	-		EFB2_04048	0.79	+0.9
4,258,508	-		EFB2_04048	0.79	+0.3
4,258,508	-		EFB2_04048	0.79	-4.2
4,258,508	-		EFB2_04048	0.79	-3.2
4,258,508	-		EFB2_04048	0.79	-2.1
4,258,508	-		EFB2_04048	0.79	-0.6
4,258,508	-		EFB2_04048	0.79	-0.6
4,258,550	+		EFB2_04048	0.84	+1.2
4,258,550	+		EFB2_04048	0.84	+0.6
4,258,550	+		EFB2_04048	0.84	+0.9
4,258,551	-		EFB2_04048	0.84	-0.9
4,258,551	-		EFB2_04048	0.84	+0.5
4,258,552	+		EFB2_04048	0.84	-0.2
4,258,553	-		EFB2_04048	0.84	-0.2
4,258,553	-		EFB2_04048	0.84	-1.2
4,258,575	+		EFB2_04048	0.86	-0.4
4,258,575	+		EFB2_04048	0.86	-0.5
4,258,575	+		EFB2_04048	0.86	-0.5
4,258,575	+		EFB2_04048	0.86	-1.2
4,258,576	-		EFB2_04048	0.87	+0.8
4,258,576	-		EFB2_04048	0.87	-2.1
4,258,602	+		EFB2_04048	0.90	+0.8
4,258,603	-		EFB2_04048	0.90	+0.4
4,258,612	+				-1.3
4,258,612	+				+0.3
4,258,612	+				+0.1
4,258,612	+				+1.8
4,258,613	-				+0.7
4,258,613	-				+0.4
4,258,613	-				+0.1
4,258,615	+				-0.1
4,258,653	+				-1.2
4,258,653	+				+0.3
4,258,653	+				-0.5
4,258,653	+				-1.0
4,258,653	+				+1.0
4,258,653	+				-1.7
4,258,653	+				+0.1
4,258,653	+				-2.4
4,258,654	-				-2.5
4,258,654	-				-2.7
4,258,654	-				+0.4
4,258,654	-				-0.3
4,258,707	+				+0.2
4,258,707	+				-1.2
4,258,707	+				-0.6
4,258,707	+				+0.1
4,258,707	+				-0.0
4,258,707	+				-0.9
4,258,707	+				+0.3
4,258,707	+				-0.0
4,258,707	+				+0.1
4,258,707	+				-1.2
4,258,707	+				-0.6
4,258,707	+				+1.1
4,258,707	+				-0.6
4,258,707	+				+2.8
4,258,707	+				+0.5
4,258,707	+				+0.4
4,258,707	+				+1.0
4,258,708	-				+0.1
4,258,708	-				-2.4
4,258,708	-				+2.0
4,258,708	-				-2.5
4,258,708	-				-0.3
4,258,708	-				-0.2
4,258,708	-				+1.2
4,258,708	-				+0.8
4,258,708	-				+0.5
4,258,708	-				-2.1
4,258,708	-				+0.9
4,258,708	-				-1.1
4,258,708	-				-0.2
4,258,786	+		EFB2_04049	0.15	+0.2
4,258,786	+		EFB2_04049	0.15	-0.4
4,258,802	+		EFB2_04049	0.17	-0.8
4,258,802	+		EFB2_04049	0.17	-2.1
4,258,803	-		EFB2_04049	0.18	-0.8
4,258,803	-		EFB2_04049	0.18	-1.5
4,258,803	-		EFB2_04049	0.18	+0.4
4,258,803	-		EFB2_04049	0.18	-3.2
4,258,811	+		EFB2_04049	0.19	-0.7
4,258,811	+		EFB2_04049	0.19	+0.2
4,258,811	+		EFB2_04049	0.19	+1.0
4,258,811	+		EFB2_04049	0.19	+0.9
4,258,811	+		EFB2_04049	0.19	+0.6
4,258,812	-		EFB2_04049	0.19	+0.1
4,258,812	-		EFB2_04049	0.19	-0.7
4,258,812	-		EFB2_04049	0.19	+0.1
4,258,812	-		EFB2_04049	0.19	+0.4
4,258,812	-		EFB2_04049	0.19	+0.3
4,258,821	+		EFB2_04049	0.20	-0.1
4,258,821	+		EFB2_04049	0.20	+1.5
4,258,821	+		EFB2_04049	0.20	-0.3
4,258,821	+		EFB2_04049	0.20	-0.3
4,258,821	+		EFB2_04049	0.20	+0.3
4,258,821	+		EFB2_04049	0.20	+0.0
4,258,821	+		EFB2_04049	0.20	+1.6
4,258,821	+		EFB2_04049	0.20	-0.6
4,258,821	+		EFB2_04049	0.20	-0.8
4,258,821	+		EFB2_04049	0.20	-1.6
4,258,821	+		EFB2_04049	0.20	+1.4
4,258,822	-		EFB2_04049	0.21	-1.1
4,258,822	-		EFB2_04049	0.21	+0.6
4,258,822	-		EFB2_04049	0.21	-2.2
4,258,822	-		EFB2_04049	0.21	+1.7
4,258,822	-		EFB2_04049	0.21	-0.3
4,258,822	-		EFB2_04049	0.21	-2.2
4,258,822	-		EFB2_04049	0.21	+0.3
4,258,822	-		EFB2_04049	0.21	-2.2
4,258,822	-		EFB2_04049	0.21	+0.8
4,258,845	+		EFB2_04049	0.24	-0.1
4,258,845	+		EFB2_04049	0.24	+0.7
4,258,845	+		EFB2_04049	0.24	-1.4
4,258,846	-		EFB2_04049	0.24	-0.4
4,258,860	-		EFB2_04049	0.26	-1.2
4,258,860	-		EFB2_04049	0.26	-2.5
4,258,860	-		EFB2_04049	0.26	-0.1
4,258,883	+		EFB2_04049	0.30	-0.7
4,258,884	-		EFB2_04049	0.30	-2.9
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4,260,318	-				-2.6
4,260,318	-				-0.4
4,260,318	-				-0.9
4,260,318	-				-1.4
4,260,318	-				-1.2
4,260,318	-				-0.8
4,260,318	-				+0.3