Strain Fitness in Escherichia fergusonii Becca around EFB2_03209

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,367,506	+				+0.8
3,367,507	-				+2.5
3,367,510	+				-0.2
3,367,510	+				-1.5
3,367,510	+				+0.7
3,367,510	+				-0.1
3,367,510	+				-2.4
3,367,510	+				-0.9
3,367,510	+				+0.4
3,367,510	+				-0.1
3,367,510	+				-1.2
3,367,510	+				+3.7
3,367,510	+				-1.6
3,367,510	+				-0.3
3,367,510	+				-0.3
3,367,510	+				+0.4
3,367,510	+				+3.2
3,367,511	-				+0.9
3,367,511	-				-1.8
3,367,511	-				-3.7
3,367,511	-				-1.8
3,367,511	-				-3.3
3,367,511	-				+1.4
3,367,511	-				+0.2
3,367,511	-				+0.0
3,367,511	-				+2.6
3,367,511	-				-2.1
3,367,511	-				+0.7
3,367,511	-				-2.1
3,367,511	-				-0.4
3,367,511	-				+0.7
3,367,511	-				-0.8
3,367,511	-				+0.5
3,367,511	-				+0.1
3,367,511	-				-1.2
3,367,511	-				-2.4
3,367,521	+				+0.0
3,367,521	+				-3.0
3,367,521	+				+0.9
3,367,521	+				+0.3
3,367,521	+				-1.9
3,367,521	+				-0.8
3,367,521	+				+0.9
3,367,522	-				+1.6
3,367,522	-				-0.4
3,367,522	-				+0.1
3,367,522	-				-2.0
3,367,522	-				-0.1
3,367,522	-				+1.0
3,367,522	-				-2.1
3,367,579	+				+0.9
3,367,580	-				+0.2
3,367,616	-				+1.3
3,367,616	-				-0.3
3,367,653	+				+0.9
3,367,653	+				+0.4
3,367,653	+				-0.1
3,367,653	+				-1.2
3,367,653	+				+0.2
3,367,654	-				+1.4
3,367,654	-				-2.0
3,367,655	+				+0.7
3,367,655	+				-1.1
3,367,655	+				+0.7
3,367,655	+				-2.3
3,367,655	+				-0.3
3,367,655	+				+1.4
3,367,655	+				-2.7
3,367,655	+				-1.0
3,367,655	+				+0.2
3,367,655	+				+0.6
3,367,655	+				-0.4
3,367,655	+				+1.2
3,367,655	+				-3.3
3,367,655	+				-1.1
3,367,655	+				-0.8
3,367,655	+				+1.0
3,367,655	+				-1.9
3,367,655	+				+1.4
3,367,655	+				-1.3
3,367,656	-				+2.6
3,367,656	-				-1.7
3,367,656	-				-1.8
3,367,656	-				-0.7
3,367,656	-				-2.3
3,367,656	-				-0.5
3,367,656	-				-0.6
3,367,656	-				-1.1
3,367,656	-				+0.2
3,367,656	-				-0.3
3,367,657	+				+2.1
3,367,657	+				-1.8
3,367,657	+				-1.6
3,367,657	+				-1.1
3,367,657	+				-0.1
3,367,657	+				+0.5
3,367,658	-				-1.8
3,367,658	-				+2.2
3,367,658	-				-1.0
3,367,658	-				-1.2
3,367,674	+				-1.9
3,367,674	+				+0.3
3,367,674	+				+0.9
3,367,674	+				-2.2
3,367,674	+				-0.2
3,367,697	+				-0.5
3,367,697	+				-0.7
3,367,697	+				-0.1
3,367,697	+				-2.9
3,367,698	-				+1.8
3,367,698	-				+2.2
3,367,698	-				-0.0
3,367,698	-				-1.2
3,367,698	-				+2.8
3,367,698	-				-2.2
3,367,699	+				-2.9
3,367,699	+				-1.3
3,367,699	+				-0.3
3,367,699	+				+0.7
3,367,699	+				+1.1
3,367,699	+				-2.2
3,367,700	-				-0.6
3,367,700	-				+2.0
3,367,700	-				+1.1
3,367,700	-				-0.0
3,367,700	-				-1.5
3,367,700	-				-0.3
3,367,700	-				+0.7
3,367,750	-				+2.2
3,367,787	-				-0.2
3,367,869	+				+0.8
3,367,869	+				+0.5
3,367,869	+				-3.2
3,367,869	+				-1.9
3,367,870	-				+1.4
3,367,870	-				-1.9
3,367,884	+				+0.2
3,367,884	+				-1.8
3,367,885	-				-0.4
3,367,885	-				+1.9
3,367,901	-				+1.7
3,367,901	-				+1.0
3,367,901	-				-0.2
3,367,926	-		EFB2_03208	0.12	-2.3
3,367,945	+		EFB2_03208	0.16	+1.0
3,367,945	+		EFB2_03208	0.16	-2.6
3,367,945	+		EFB2_03208	0.16	-1.8
3,367,945	+		EFB2_03208	0.16	+2.2
3,367,946	-		EFB2_03208	0.16	-0.1
3,367,946	-		EFB2_03208	0.16	-2.1
3,367,946	-		EFB2_03208	0.16	+0.4
3,367,946	-		EFB2_03208	0.16	+1.4
3,368,010	+		EFB2_03208	0.29	-2.1
3,368,010	+		EFB2_03208	0.29	-1.5
3,368,010	+		EFB2_03208	0.29	-2.2
3,368,010	+		EFB2_03208	0.29	+1.0
3,368,010	+		EFB2_03208	0.29	+1.1
3,368,010	+		EFB2_03208	0.29	+1.7
3,368,010	+		EFB2_03208	0.29	-1.3
3,368,010	+		EFB2_03208	0.29	-1.8
3,368,010	+		EFB2_03208	0.29	+0.4
3,368,011	-		EFB2_03208	0.29	-1.3
3,368,011	-		EFB2_03208	0.29	+0.2
3,368,011	-		EFB2_03208	0.29	-0.6
3,368,011	-		EFB2_03208	0.29	-1.3
3,368,011	-		EFB2_03208	0.29	-2.0
3,368,011	-		EFB2_03208	0.29	-0.6
3,368,011	-		EFB2_03208	0.29	+1.5
3,368,011	-		EFB2_03208	0.29	+1.4
3,368,011	-		EFB2_03208	0.29	-1.1
3,368,011	-		EFB2_03208	0.29	-0.1
3,368,016	-		EFB2_03208	0.30	+0.4
3,368,065	+		EFB2_03208	0.41	-1.3
3,368,066	-		EFB2_03208	0.41	-0.9
3,368,066	-		EFB2_03208	0.41	+4.6
3,368,066	-		EFB2_03208	0.41	+1.2
3,368,066	-		EFB2_03208	0.41	+0.5
3,368,077	+		EFB2_03208	0.43	+1.2
3,368,078	-		EFB2_03208	0.43	+0.0
3,368,124	-		EFB2_03208	0.53	-1.2
3,368,144	+		EFB2_03208	0.57	-0.3
3,368,239	+		EFB2_03208	0.77	-1.3
3,368,240	-		EFB2_03208	0.77	-0.1
3,368,266	+		EFB2_03208	0.83	-0.9
3,368,267	-		EFB2_03208	0.83	+1.7
3,368,267	-		EFB2_03208	0.83	-1.6
3,368,267	-		EFB2_03208	0.83	-1.1
3,368,267	-		EFB2_03208	0.83	-1.4
3,368,317	+				+1.8
3,368,318	-				+0.9
3,368,347	+				+3.0
3,368,348	-				+0.2
3,368,356	-				-2.1
3,368,356	-				-0.4
3,368,421	+				-1.0
3,368,436	+				-0.8
3,368,436	+				-0.3
3,368,457	+				+3.1
3,368,457	+				+0.1
3,368,458	-				+0.7
3,368,467	+				-1.8
3,368,468	-				-1.9
3,368,529	-		EFB2_03209	0.10	-1.8
3,368,581	+		EFB2_03209	0.16	+1.7
3,368,581	+		EFB2_03209	0.16	+0.0
3,368,582	-		EFB2_03209	0.16	+0.1
3,368,594	-		EFB2_03209	0.18	+0.1
3,368,637	-		EFB2_03209	0.22	+0.5
3,368,665	+		EFB2_03209	0.25	+1.0
3,368,747	+		EFB2_03209	0.35	-1.8
3,368,747	+		EFB2_03209	0.35	-1.3
3,368,747	+		EFB2_03209	0.35	+0.1
3,368,747	+		EFB2_03209	0.35	-1.4
3,368,747	+		EFB2_03209	0.35	-0.9
3,368,747	+		EFB2_03209	0.35	-0.3
3,368,748	-		EFB2_03209	0.35	-1.0
3,368,748	-		EFB2_03209	0.35	+0.1
3,368,748	-		EFB2_03209	0.35	+0.5
3,368,800	+		EFB2_03209	0.40	+3.2
3,368,800	+		EFB2_03209	0.40	-1.8
3,368,800	+		EFB2_03209	0.40	-2.8
3,368,800	+		EFB2_03209	0.40	-0.3
3,368,800	+		EFB2_03209	0.40	-2.7
3,368,800	+		EFB2_03209	0.40	+0.3
3,368,800	+		EFB2_03209	0.40	+0.2
3,368,800	+		EFB2_03209	0.40	+1.5
3,368,801	-		EFB2_03209	0.41	-0.8
3,368,801	-		EFB2_03209	0.41	+1.5
3,368,801	-		EFB2_03209	0.41	-0.7
3,368,801	-		EFB2_03209	0.41	-0.5
3,368,801	-		EFB2_03209	0.41	-2.4
3,368,801	-		EFB2_03209	0.41	-3.5
3,368,801	-		EFB2_03209	0.41	-1.2
3,368,801	-		EFB2_03209	0.41	-0.1
3,368,802	+		EFB2_03209	0.41	+2.2
3,368,802	+		EFB2_03209	0.41	-0.2
3,368,802	+		EFB2_03209	0.41	-2.7
3,368,802	+		EFB2_03209	0.41	+0.1
3,368,802	+		EFB2_03209	0.41	-0.8
3,368,802	+		EFB2_03209	0.41	-1.5
3,368,802	+		EFB2_03209	0.41	-2.8
3,368,802	+		EFB2_03209	0.41	+0.8
3,368,802	+		EFB2_03209	0.41	-2.5
3,368,803	-		EFB2_03209	0.41	-1.5
3,368,803	-		EFB2_03209	0.41	-0.7
3,368,803	-		EFB2_03209	0.41	-2.1
3,368,803	-		EFB2_03209	0.41	+0.4
3,368,803	-		EFB2_03209	0.41	-1.2
3,368,803	-		EFB2_03209	0.41	-1.9
3,368,803	-		EFB2_03209	0.41	+0.2
3,368,803	-		EFB2_03209	0.41	-1.2
3,368,803	-		EFB2_03209	0.41	+2.2
3,368,803	-		EFB2_03209	0.41	+2.7
3,368,803	-		EFB2_03209	0.41	+1.6
3,368,818	+		EFB2_03209	0.42	-1.1
3,368,818	+		EFB2_03209	0.42	+0.2
3,368,818	+		EFB2_03209	0.42	+1.1
3,368,818	+		EFB2_03209	0.42	+0.6
3,368,818	+		EFB2_03209	0.42	-3.2
3,368,818	+		EFB2_03209	0.42	+0.1
3,368,819	-		EFB2_03209	0.43	-1.3
3,368,819	-		EFB2_03209	0.43	+1.8
3,368,819	-		EFB2_03209	0.43	-0.3
3,368,819	-		EFB2_03209	0.43	-0.6
3,368,952	-		EFB2_03209	0.57	-0.6
3,368,962	+		EFB2_03209	0.58	-0.3
3,369,081	+		EFB2_03209	0.72	-1.8
3,369,082	-		EFB2_03209	0.72	+0.3
3,369,123	+		EFB2_03209	0.76	+0.1
3,369,123	+		EFB2_03209	0.76	-1.1
3,369,124	-		EFB2_03209	0.76	+1.2
3,369,130	+		EFB2_03209	0.77	+1.4
3,369,130	+		EFB2_03209	0.77	+0.1
3,369,145	+		EFB2_03209	0.79	+0.5
3,369,173	+		EFB2_03209	0.82	-1.1
3,369,189	+		EFB2_03209	0.83	+0.9
3,369,189	+		EFB2_03209	0.83	-1.9
3,369,189	+		EFB2_03209	0.83	+2.7
3,369,189	+		EFB2_03209	0.83	-1.5
3,369,189	+		EFB2_03209	0.83	-1.3
3,369,190	-		EFB2_03209	0.84	+1.6
3,369,196	+		EFB2_03209	0.84	-1.0
3,369,196	+		EFB2_03209	0.84	-0.9
3,369,196	+		EFB2_03209	0.84	-0.3
3,369,196	+		EFB2_03209	0.84	-0.5
3,369,196	+		EFB2_03209	0.84	-0.3
3,369,197	-		EFB2_03209	0.84	+1.0
3,369,197	-		EFB2_03209	0.84	+0.5
3,369,197	-		EFB2_03209	0.84	-0.6
3,369,197	-		EFB2_03209	0.84	-1.4
3,369,197	-		EFB2_03209	0.84	-0.9
3,369,197	-		EFB2_03209	0.84	-0.7
3,369,197	-		EFB2_03209	0.84	+1.8
3,369,197	-		EFB2_03209	0.84	-0.4
3,369,197	-		EFB2_03209	0.84	-2.7
3,369,197	-		EFB2_03209	0.84	+0.7
3,369,197	-		EFB2_03209	0.84	+0.2
3,369,215	+		EFB2_03209	0.86	+2.2
3,369,215	+		EFB2_03209	0.86	-1.3
3,369,215	+		EFB2_03209	0.86	-1.1
3,369,215	+		EFB2_03209	0.86	-0.3
3,369,215	+		EFB2_03209	0.86	+0.1
3,369,215	+		EFB2_03209	0.86	-1.9
3,369,216	-		EFB2_03209	0.86	-1.1
3,369,216	-		EFB2_03209	0.86	-0.8
3,369,216	-		EFB2_03209	0.86	+0.1
3,369,216	-		EFB2_03209	0.86	-2.7
3,369,216	-		EFB2_03209	0.86	-1.1
3,369,216	-		EFB2_03209	0.86	+0.9
3,369,216	-		EFB2_03209	0.86	-1.5
3,369,216	-		EFB2_03209	0.86	+0.9
3,369,225	+		EFB2_03209	0.87	-1.1
3,369,225	+		EFB2_03209	0.87	+1.0
3,369,225	+		EFB2_03209	0.87	-0.7
3,369,225	+		EFB2_03209	0.87	-1.7
3,369,225	+		EFB2_03209	0.87	+0.3
3,369,225	+		EFB2_03209	0.87	+0.1
3,369,225	+		EFB2_03209	0.87	-0.6
3,369,225	+		EFB2_03209	0.87	-1.8
3,369,225	+		EFB2_03209	0.87	-0.6
3,369,225	+		EFB2_03209	0.87	-0.8
3,369,226	-		EFB2_03209	0.88	+2.5
3,369,226	-		EFB2_03209	0.88	+1.7
3,369,226	-		EFB2_03209	0.88	-0.1
3,369,226	-		EFB2_03209	0.88	-0.5
3,369,226	-		EFB2_03209	0.88	-1.1
3,369,226	-		EFB2_03209	0.88	-0.8
3,369,226	-		EFB2_03209	0.88	+1.2
3,369,226	-		EFB2_03209	0.88	+0.6
3,369,226	-		EFB2_03209	0.88	-0.8
3,369,226	-		EFB2_03209	0.88	-4.2
3,369,269	+				-1.2
3,369,269	+				-0.1
3,369,269	+				-0.4
3,369,269	+				-0.3
3,369,269	+				-1.3
3,369,269	+				-2.2
3,369,269	+				+0.1
3,369,270	-				+1.4
3,369,270	-				-1.2
3,369,270	-				+1.5
3,369,270	-				+0.9
3,369,270	-				-0.3
3,369,270	-				+1.1
3,369,270	-				-3.1
3,369,270	-				+0.8
3,369,270	-				+1.7
3,369,270	-				-1.3
3,369,270	-				-1.1
3,369,270	-				-3.1
3,369,270	-				+0.7
3,369,270	-				+1.5
3,369,272	-				-2.5
3,369,292	+				-2.3
3,369,292	+				-0.3
3,369,293	-				-0.9
3,369,300	+				+0.1
3,369,300	+				-0.1
3,369,300	+				+0.8
3,369,301	-				-2.2
3,369,301	-				-0.8
3,369,323	+				-2.0
3,369,324	-				-2.9
3,369,375	+				+0.8
3,369,375	+				-0.1
3,369,375	+				-1.0
3,369,375	+				-0.3
3,369,376	-				+1.4
3,369,376	-				+0.8
3,369,376	-				-1.2
3,369,380	+				+0.5
3,369,380	+				-0.7
3,369,380	+				+2.5
3,369,380	+				+0.7
3,369,380	+				+0.1
3,369,380	+				+0.3
3,369,380	+				+0.2
3,369,380	+				-2.6
3,369,380	+				+0.6
3,369,380	+				-0.2
3,369,380	+				-0.2
3,369,381	-				-0.9
3,369,381	-				+1.4
3,369,381	-				+1.0
3,369,381	-				+0.6
3,369,381	-				-1.0
3,369,381	-				+0.6
3,369,400	-				-2.5
3,369,400	-				+1.7
3,369,429	+				+1.4
3,369,429	+				-0.0
3,369,430	-				+1.1
3,369,430	-				+0.1
3,369,430	-				-0.6
3,369,430	-				+0.5
3,369,430	-				+0.0
3,369,430	-				-0.2
3,369,439	+				+1.6
3,369,439	+				-0.2
3,369,439	+				+2.1
3,369,440	-				-2.2
3,369,440	-				+0.4
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