Strain Fitness in Escherichia fergusonii Becca around EFB2_03121

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,257,820	+		EFB2_03120	0.40	-0.4
3,257,820	+		EFB2_03120	0.40	-1.8
3,257,821	-		EFB2_03120	0.40	-2.0
3,257,821	-		EFB2_03120	0.40	-0.4
3,257,821	-		EFB2_03120	0.40	+1.5
3,257,836	-		EFB2_03120	0.41	-1.9
3,257,836	-		EFB2_03120	0.41	-0.3
3,257,836	-		EFB2_03120	0.41	+1.1
3,257,864	-		EFB2_03120	0.42	+1.2
3,257,945	+		EFB2_03120	0.47	+1.1
3,257,946	-		EFB2_03120	0.47	-0.9
3,257,946	-		EFB2_03120	0.47	+1.0
3,257,964	-		EFB2_03120	0.49	-0.4
3,258,035	-		EFB2_03120	0.53	+1.5
3,258,076	-		EFB2_03120	0.55	+0.7
3,258,144	+		EFB2_03120	0.60	+2.5
3,258,144	+		EFB2_03120	0.60	+0.6
3,258,144	+		EFB2_03120	0.60	+0.2
3,258,145	-		EFB2_03120	0.60	+0.9
3,258,145	-		EFB2_03120	0.60	-1.7
3,258,185	+		EFB2_03120	0.62	+0.6
3,258,185	+		EFB2_03120	0.62	-0.6
3,258,185	+		EFB2_03120	0.62	-1.5
3,258,185	+		EFB2_03120	0.62	-0.9
3,258,185	+		EFB2_03120	0.62	-1.2
3,258,186	-		EFB2_03120	0.62	-0.0
3,258,186	-		EFB2_03120	0.62	-1.0
3,258,186	-		EFB2_03120	0.62	+0.0
3,258,216	+		EFB2_03120	0.64	-0.1
3,258,216	+		EFB2_03120	0.64	-2.7
3,258,260	-		EFB2_03120	0.67	+0.1
3,258,318	+		EFB2_03120	0.70	+0.4
3,258,337	-		EFB2_03120	0.71	-0.1
3,258,337	-		EFB2_03120	0.71	+0.0
3,258,383	+		EFB2_03120	0.74	+0.6
3,258,383	+		EFB2_03120	0.74	+0.4
3,258,383	+		EFB2_03120	0.74	-3.1
3,258,384	-		EFB2_03120	0.74	-1.4
3,258,384	-		EFB2_03120	0.74	-2.9
3,258,384	-		EFB2_03120	0.74	+0.3
3,258,384	-		EFB2_03120	0.74	-2.1
3,258,387	+		EFB2_03120	0.74	-2.5
3,258,387	+		EFB2_03120	0.74	+1.1
3,258,388	-		EFB2_03120	0.74	-0.1
3,258,426	+		EFB2_03120	0.77	-1.2
3,258,428	+		EFB2_03120	0.77	+0.1
3,258,428	+		EFB2_03120	0.77	+1.6
3,258,428	+		EFB2_03120	0.77	-0.1
3,258,428	+		EFB2_03120	0.77	+0.8
3,258,429	-		EFB2_03120	0.77	-0.2
3,258,505	-		EFB2_03120	0.82	+0.7
3,258,613	-		EFB2_03120	0.88	-0.5
3,258,621	+		EFB2_03120	0.89	-0.9
3,258,622	-		EFB2_03120	0.89	+0.3
3,258,695	+				-0.3
3,258,695	+				+1.4
3,258,696	-				-1.6
3,258,696	-				-1.4
3,258,696	-				+0.8
3,258,696	-				+2.1
3,258,696	-				+0.6
3,258,696	-				-0.6
3,258,745	+				+0.2
3,258,746	-				+1.5
3,258,796	-				-1.7
3,258,798	+				-2.3
3,258,798	+				+4.0
3,258,798	+				-1.4
3,258,798	+				-0.4
3,258,798	+				-1.9
3,258,798	+				+2.2
3,258,799	-				+1.2
3,258,799	-				+0.2
3,258,799	-				-1.6
3,258,875	-				+2.0
3,258,893	+				-0.1
3,258,894	-				+0.2
3,258,903	-				+1.8
3,258,915	-				-1.4
3,258,915	-				-0.4
3,258,915	-				+0.3
3,258,915	-				-1.4
3,258,915	-				-0.3
3,258,938	-		EFB2_03121	0.10	+0.9
3,258,938	-		EFB2_03121	0.10	+0.9
3,258,938	-		EFB2_03121	0.10	-0.0
3,258,938	-		EFB2_03121	0.10	+1.1
3,258,938	-		EFB2_03121	0.10	-2.2
3,258,938	-		EFB2_03121	0.10	-0.4
3,258,938	-		EFB2_03121	0.10	+0.3
3,258,938	-		EFB2_03121	0.10	-0.2
3,258,944	+		EFB2_03121	0.11	+1.6
3,258,945	-		EFB2_03121	0.11	-0.8
3,258,945	-		EFB2_03121	0.11	+0.2
3,258,945	-		EFB2_03121	0.11	-0.5
3,258,955	+		EFB2_03121	0.11	+1.4
3,259,013	+		EFB2_03121	0.16	-2.7
3,259,032	+		EFB2_03121	0.18	-1.4
3,259,032	+		EFB2_03121	0.18	-0.8
3,259,032	+		EFB2_03121	0.18	+2.2
3,259,033	-		EFB2_03121	0.18	+0.4
3,259,126	+		EFB2_03121	0.25	+0.3
3,259,126	+		EFB2_03121	0.25	+0.6
3,259,126	+		EFB2_03121	0.25	-1.9
3,259,126	+		EFB2_03121	0.25	-1.4
3,259,127	-		EFB2_03121	0.25	+3.5
3,259,127	-		EFB2_03121	0.25	-0.7
3,259,127	-		EFB2_03121	0.25	+0.6
3,259,127	-		EFB2_03121	0.25	+0.1
3,259,127	-		EFB2_03121	0.25	-0.1
3,259,127	-		EFB2_03121	0.25	-1.8
3,259,127	-		EFB2_03121	0.25	-0.3
3,259,127	-		EFB2_03121	0.25	-1.9
3,259,127	-		EFB2_03121	0.25	+1.6
3,259,127	-		EFB2_03121	0.25	+0.1
3,259,129	+		EFB2_03121	0.25	-0.9
3,259,129	+		EFB2_03121	0.25	-1.1
3,259,129	+		EFB2_03121	0.25	+2.2
3,259,129	+		EFB2_03121	0.25	-0.6
3,259,129	+		EFB2_03121	0.25	+2.6
3,259,129	+		EFB2_03121	0.25	-0.3
3,259,130	-		EFB2_03121	0.25	+0.7
3,259,130	-		EFB2_03121	0.25	+0.3
3,259,130	-		EFB2_03121	0.25	-0.6
3,259,130	-		EFB2_03121	0.25	-2.6
3,259,130	-		EFB2_03121	0.25	+1.2
3,259,130	-		EFB2_03121	0.25	+2.0
3,259,130	-		EFB2_03121	0.25	-2.8
3,259,130	-		EFB2_03121	0.25	+0.3
3,259,130	-		EFB2_03121	0.25	-1.6
3,259,130	-		EFB2_03121	0.25	-1.5
3,259,161	+		EFB2_03121	0.28	+2.0
3,259,161	+		EFB2_03121	0.28	-0.1
3,259,162	-		EFB2_03121	0.28	+1.7
3,259,178	+		EFB2_03121	0.29	+0.0
3,259,226	+		EFB2_03121	0.33	+1.0
3,259,226	+		EFB2_03121	0.33	+0.8
3,259,226	+		EFB2_03121	0.33	+1.2
3,259,227	-		EFB2_03121	0.33	-1.3
3,259,227	-		EFB2_03121	0.33	+0.0
3,259,227	-		EFB2_03121	0.33	+2.2
3,259,227	-		EFB2_03121	0.33	-0.7
3,259,227	-		EFB2_03121	0.33	-0.9
3,259,227	-		EFB2_03121	0.33	-1.1
3,259,227	-		EFB2_03121	0.33	+0.2
3,259,252	+		EFB2_03121	0.35	-1.8
3,259,253	-		EFB2_03121	0.35	-1.8
3,259,253	-		EFB2_03121	0.35	-0.8
3,259,253	-		EFB2_03121	0.35	-0.4
3,259,266	+		EFB2_03121	0.36	+0.2
3,259,267	-		EFB2_03121	0.36	-1.3
3,259,267	-		EFB2_03121	0.36	+0.1
3,259,267	-		EFB2_03121	0.36	+0.9
3,259,267	-		EFB2_03121	0.36	+1.0
3,259,267	-		EFB2_03121	0.36	-1.5
3,259,283	+		EFB2_03121	0.38	+1.6
3,259,283	+		EFB2_03121	0.38	+0.8
3,259,283	+		EFB2_03121	0.38	+0.9
3,259,283	+		EFB2_03121	0.38	+2.7
3,259,283	+		EFB2_03121	0.38	+3.2
3,259,284	-		EFB2_03121	0.38	-3.1
3,259,284	-		EFB2_03121	0.38	+0.9
3,259,284	-		EFB2_03121	0.38	+0.5
3,259,284	-		EFB2_03121	0.38	+0.9
3,259,329	+		EFB2_03121	0.41	-1.3
3,259,330	-		EFB2_03121	0.41	+0.9
3,259,330	-		EFB2_03121	0.41	+2.5
3,259,330	-		EFB2_03121	0.41	+0.8
3,259,330	-		EFB2_03121	0.41	+1.5
3,259,339	+		EFB2_03121	0.42	-2.2
3,259,339	+		EFB2_03121	0.42	-0.9
3,259,340	-		EFB2_03121	0.42	+0.4
3,259,340	-		EFB2_03121	0.42	-0.8
3,259,340	-		EFB2_03121	0.42	+1.9
3,259,342	+		EFB2_03121	0.42	-3.1
3,259,342	+		EFB2_03121	0.42	+2.1
3,259,342	+		EFB2_03121	0.42	+1.2
3,259,343	-		EFB2_03121	0.42	-0.9
3,259,343	-		EFB2_03121	0.42	+0.2
3,259,343	-		EFB2_03121	0.42	-0.4
3,259,343	-		EFB2_03121	0.42	-0.4
3,259,343	-		EFB2_03121	0.42	-1.3
3,259,343	-		EFB2_03121	0.42	-0.6
3,259,384	+		EFB2_03121	0.46	-1.1
3,259,384	+		EFB2_03121	0.46	-0.8
3,259,385	-		EFB2_03121	0.46	-0.8
3,259,416	-		EFB2_03121	0.48	-1.6
3,259,416	-		EFB2_03121	0.48	+0.4
3,259,437	-		EFB2_03121	0.50	-3.6
3,259,530	-		EFB2_03121	0.57	+0.7
3,259,674	-		EFB2_03121	0.69	-1.8
3,259,674	-		EFB2_03121	0.69	-0.8
3,259,719	-		EFB2_03121	0.72	-2.8
3,259,719	-		EFB2_03121	0.72	-1.8
3,259,779	+		EFB2_03121	0.77	+1.2
3,259,779	+		EFB2_03121	0.77	-2.8
3,259,779	+		EFB2_03121	0.77	-0.4
3,259,779	+		EFB2_03121	0.77	+3.2
3,259,779	+		EFB2_03121	0.77	+1.6
3,259,780	-		EFB2_03121	0.77	-0.6
3,259,780	-		EFB2_03121	0.77	+0.2
3,259,814	+		EFB2_03121	0.80	-0.8
3,259,814	+		EFB2_03121	0.80	-1.5
3,259,815	-		EFB2_03121	0.80	+0.6
3,259,815	-		EFB2_03121	0.80	+0.1
3,259,819	+		EFB2_03121	0.80	+1.0
3,259,819	+		EFB2_03121	0.80	-0.2
3,259,819	+		EFB2_03121	0.80	-1.0
3,259,819	+		EFB2_03121	0.80	-0.4
3,259,819	+		EFB2_03121	0.80	-0.1
3,259,820	-		EFB2_03121	0.80	+0.1
3,259,820	-		EFB2_03121	0.80	-0.2
3,259,820	-		EFB2_03121	0.80	-0.5
3,259,820	-		EFB2_03121	0.80	-2.0
3,259,820	-		EFB2_03121	0.80	+0.8
3,259,849	+		EFB2_03121	0.83	-0.6
3,259,849	+		EFB2_03121	0.83	+1.5
3,259,850	-		EFB2_03121	0.83	-2.5
3,259,850	-		EFB2_03121	0.83	+2.1
3,259,906	-		EFB2_03121	0.87	-1.7
3,260,069	+				-1.7
3,260,070	-				-2.4
3,260,076	+				-0.0
3,260,077	-				-2.1
3,260,077	-				-0.2
3,260,087	+				+1.3
3,260,088	-				+0.5
3,260,088	-				-0.4
3,260,130	-				-2.8
3,260,138	+				+0.4
3,260,138	+				+0.6
3,260,139	-				-1.8
3,260,153	+				+1.2
3,260,154	-				+0.2
3,260,154	-				-0.4
3,260,154	-				-0.2
3,260,154	-				-1.8
3,260,176	+				-0.8
3,260,177	-				-0.1
3,260,186	-				-1.6
3,260,186	-				+2.3
3,260,223	+				+2.5
3,260,272	+				+1.0
3,260,343	-				+1.5
3,260,343	-				+1.6
3,260,343	-				+0.9
3,260,343	-				-2.4
3,260,411	-		EFB2_03122	0.11	+0.5
3,260,411	-		EFB2_03122	0.11	+0.2
3,260,411	-		EFB2_03122	0.11	+0.2
3,260,412	+		EFB2_03122	0.11	-1.8
3,260,412	+		EFB2_03122	0.11	-3.1
3,260,412	+		EFB2_03122	0.11	+0.6
3,260,412	+		EFB2_03122	0.11	+0.2
3,260,412	+		EFB2_03122	0.11	+1.2
3,260,413	-		EFB2_03122	0.11	+0.6
3,260,413	-		EFB2_03122	0.11	-0.3
3,260,413	-		EFB2_03122	0.11	-1.1
3,260,413	-		EFB2_03122	0.11	+0.6
3,260,413	-		EFB2_03122	0.11	+1.7
3,260,417	+		EFB2_03122	0.12	+0.5
3,260,417	+		EFB2_03122	0.12	-0.6
3,260,417	+		EFB2_03122	0.12	+0.0
3,260,417	+		EFB2_03122	0.12	-1.9
3,260,418	-		EFB2_03122	0.12	-1.2
3,260,418	-		EFB2_03122	0.12	+1.2
3,260,418	-		EFB2_03122	0.12	+0.3
3,260,418	-		EFB2_03122	0.12	-2.6
3,260,418	-		EFB2_03122	0.12	-0.5
3,260,418	-		EFB2_03122	0.12	+0.7
3,260,418	-		EFB2_03122	0.12	+0.2
3,260,418	-		EFB2_03122	0.12	+0.8
3,260,418	-		EFB2_03122	0.12	-0.4
3,260,418	-		EFB2_03122	0.12	+0.3
3,260,418	-		EFB2_03122	0.12	+0.1
3,260,418	-		EFB2_03122	0.12	+1.6
3,260,418	-		EFB2_03122	0.12	-1.1
3,260,418	-		EFB2_03122	0.12	+2.2
3,260,418	-		EFB2_03122	0.12	+0.2
3,260,426	-		EFB2_03122	0.12	+0.6
3,260,439	-		EFB2_03122	0.13	-0.9
3,260,505	+		EFB2_03122	0.16	-1.5
3,260,505	+		EFB2_03122	0.16	+0.3
3,260,505	+		EFB2_03122	0.16	+1.2
3,260,505	+		EFB2_03122	0.16	-0.1
3,260,505	+		EFB2_03122	0.16	+0.6
3,260,505	+		EFB2_03122	0.16	-1.9
3,260,505	+		EFB2_03122	0.16	+0.6
3,260,505	+		EFB2_03122	0.16	+1.2
3,260,505	+		EFB2_03122	0.16	+3.0
3,260,505	+		EFB2_03122	0.16	-0.6
3,260,505	+		EFB2_03122	0.16	+2.2
3,260,505	+		EFB2_03122	0.16	-0.2
3,260,505	+		EFB2_03122	0.16	+0.3
3,260,505	+		EFB2_03122	0.16	+0.6
3,260,505	+		EFB2_03122	0.16	-0.4
3,260,506	-		EFB2_03122	0.16	-0.2
3,260,506	-		EFB2_03122	0.16	-1.7
3,260,506	-		EFB2_03122	0.16	-0.5
3,260,506	-		EFB2_03122	0.16	-1.3
3,260,506	-		EFB2_03122	0.16	-3.1
3,260,506	-		EFB2_03122	0.16	+0.6
3,260,506	-		EFB2_03122	0.16	-0.8
3,260,506	-		EFB2_03122	0.16	-2.0
3,260,506	-		EFB2_03122	0.16	+0.5
3,260,506	-		EFB2_03122	0.16	+0.8
3,260,506	-		EFB2_03122	0.16	-1.5
3,260,506	-		EFB2_03122	0.16	-0.5
3,260,506	-		EFB2_03122	0.16	+1.6
3,260,506	-		EFB2_03122	0.16	-3.1
3,260,506	-		EFB2_03122	0.16	+0.0
3,260,506	-		EFB2_03122	0.16	+0.9
3,260,506	-		EFB2_03122	0.16	-0.1
3,260,547	+		EFB2_03122	0.18	-2.7
3,260,547	+		EFB2_03122	0.18	-1.5
3,260,547	+		EFB2_03122	0.18	-2.7
3,260,547	+		EFB2_03122	0.18	+0.8
3,260,547	+		EFB2_03122	0.18	+0.6
3,260,548	-		EFB2_03122	0.19	-0.4
3,260,548	-		EFB2_03122	0.19	+2.2
3,260,548	-		EFB2_03122	0.19	+0.7
3,260,548	-		EFB2_03122	0.19	-2.1
3,260,548	-		EFB2_03122	0.19	-1.3
3,260,548	-		EFB2_03122	0.19	+1.0
3,260,548	-		EFB2_03122	0.19	+0.0
3,260,548	-		EFB2_03122	0.19	+1.9
3,260,548	-		EFB2_03122	0.19	-2.6
3,260,590	+		EFB2_03122	0.21	+0.0
3,260,634	-		EFB2_03122	0.23	+0.4
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3,260,646	+		EFB2_03122	0.24	-0.7
3,260,646	+		EFB2_03122	0.24	-0.9
3,260,646	+		EFB2_03122	0.24	+0.4
3,260,646	+		EFB2_03122	0.24	-1.2
3,260,646	+		EFB2_03122	0.24	+1.2
3,260,646	+		EFB2_03122	0.24	-2.2
3,260,646	+		EFB2_03122	0.24	-2.8
3,260,647	-		EFB2_03122	0.24	+0.3
3,260,647	-		EFB2_03122	0.24	-2.0
3,260,647	-		EFB2_03122	0.24	-2.6
3,260,647	-		EFB2_03122	0.24	+1.4
3,260,647	-		EFB2_03122	0.24	-1.7
3,260,647	-		EFB2_03122	0.24	-1.6
3,260,720	+		EFB2_03122	0.28	-0.6
3,260,721	-		EFB2_03122	0.28	-0.5
3,260,789	+		EFB2_03122	0.31	+1.4
3,260,789	+		EFB2_03122	0.31	+1.2
3,260,789	+		EFB2_03122	0.31	-1.2
3,260,790	-		EFB2_03122	0.31	+1.8
3,260,790	-		EFB2_03122	0.31	-2.6
3,260,790	-		EFB2_03122	0.31	+0.2
3,260,790	-		EFB2_03122	0.31	-0.9
3,260,790	-		EFB2_03122	0.31	-0.8
3,260,790	-		EFB2_03122	0.31	-1.2
3,260,790	-		EFB2_03122	0.31	-0.0
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3,260,844	-		EFB2_03122	0.34	+2.2
3,260,844	-		EFB2_03122	0.34	-0.4
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3,260,844	-		EFB2_03122	0.34	-1.6
3,260,844	-		EFB2_03122	0.34	+1.2
3,260,882	-		EFB2_03122	0.36	+0.9
3,260,882	-		EFB2_03122	0.36	-0.1
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3,260,946	+		EFB2_03122	0.39	+2.2
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3,260,951	+		EFB2_03122	0.40	+0.2
3,260,951	+		EFB2_03122	0.40	-0.8
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3,260,951	+		EFB2_03122	0.40	-1.4
3,260,952	-		EFB2_03122	0.40	-1.9
3,260,952	-		EFB2_03122	0.40	-0.4
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3,260,952	-		EFB2_03122	0.40	+0.4
3,260,977	+		EFB2_03122	0.41	+1.8
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3,261,012	-		EFB2_03122	0.43	+0.3
3,261,012	-		EFB2_03122	0.43	-1.7
3,261,012	-		EFB2_03122	0.43	-0.3
3,261,012	-		EFB2_03122	0.43	-0.5
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3,261,012	-		EFB2_03122	0.43	+0.2
3,261,012	-		EFB2_03122	0.43	+0.6
3,261,012	-		EFB2_03122	0.43	-3.3
3,261,012	-		EFB2_03122	0.43	+0.0