Strain Fitness in Escherichia fergusonii Becca around EFB2_02963

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,093,234	+		EFB2_02962	0.38	-1.5
3,093,235	-		EFB2_02962	0.38	-1.0
3,093,263	+		EFB2_02962	0.40	-0.7
3,093,264	-		EFB2_02962	0.40	+1.1
3,093,264	-		EFB2_02962	0.40	-0.0
3,093,264	-		EFB2_02962	0.40	+0.3
3,093,264	-		EFB2_02962	0.40	+1.3
3,093,264	-		EFB2_02962	0.40	-0.3
3,093,267	+		EFB2_02962	0.41	+1.4
3,093,267	+		EFB2_02962	0.41	-1.2
3,093,268	-		EFB2_02962	0.41	+0.6
3,093,303	+		EFB2_02962	0.43	-0.5
3,093,304	-		EFB2_02962	0.44	+0.6
3,093,306	+		EFB2_02962	0.44	-0.0
3,093,306	+		EFB2_02962	0.44	+2.0
3,093,306	+		EFB2_02962	0.44	-0.7
3,093,306	+		EFB2_02962	0.44	+0.1
3,093,307	-		EFB2_02962	0.44	+0.8
3,093,307	-		EFB2_02962	0.44	+1.7
3,093,307	-		EFB2_02962	0.44	+0.3
3,093,307	-		EFB2_02962	0.44	-0.7
3,093,315	+		EFB2_02962	0.44	-3.0
3,093,315	+		EFB2_02962	0.44	-1.9
3,093,315	+		EFB2_02962	0.44	+1.4
3,093,315	+		EFB2_02962	0.44	+0.8
3,093,315	+		EFB2_02962	0.44	+0.7
3,093,316	-		EFB2_02962	0.44	-1.7
3,093,316	-		EFB2_02962	0.44	+0.5
3,093,316	-		EFB2_02962	0.44	-0.3
3,093,316	-		EFB2_02962	0.44	+0.6
3,093,321	-		EFB2_02962	0.45	-0.3
3,093,321	-		EFB2_02962	0.45	+0.3
3,093,342	+		EFB2_02962	0.47	-0.9
3,093,342	+		EFB2_02962	0.47	+2.1
3,093,342	+		EFB2_02962	0.47	-0.7
3,093,343	-		EFB2_02962	0.47	-0.8
3,093,343	-		EFB2_02962	0.47	+1.9
3,093,343	-		EFB2_02962	0.47	+2.0
3,093,343	-		EFB2_02962	0.47	+2.4
3,093,343	-		EFB2_02962	0.47	-1.1
3,093,351	+		EFB2_02962	0.47	-1.5
3,093,351	+		EFB2_02962	0.47	-1.1
3,093,351	+		EFB2_02962	0.47	-0.0
3,093,351	+		EFB2_02962	0.47	+0.4
3,093,351	+		EFB2_02962	0.47	-0.7
3,093,351	+		EFB2_02962	0.47	+1.7
3,093,352	-		EFB2_02962	0.47	+0.7
3,093,352	-		EFB2_02962	0.47	-0.0
3,093,352	-		EFB2_02962	0.47	-0.3
3,093,352	-		EFB2_02962	0.47	-0.5
3,093,352	-		EFB2_02962	0.47	+0.3
3,093,352	-		EFB2_02962	0.47	-3.4
3,093,356	-		EFB2_02962	0.48	+0.8
3,093,426	+		EFB2_02962	0.53	-0.3
3,093,441	-		EFB2_02962	0.54	+1.4
3,093,441	-		EFB2_02962	0.54	-0.6
3,093,475	-		EFB2_02962	0.57	+0.3
3,093,475	-		EFB2_02962	0.57	+2.1
3,093,516	+		EFB2_02962	0.60	-1.1
3,093,517	-		EFB2_02962	0.60	-1.1
3,093,517	-		EFB2_02962	0.60	-1.7
3,093,538	+		EFB2_02962	0.62	+0.8
3,093,539	-		EFB2_02962	0.62	-0.1
3,093,539	-		EFB2_02962	0.62	+0.7
3,093,586	-		EFB2_02962	0.66	-1.5
3,093,591	+		EFB2_02962	0.66	+0.4
3,093,613	+		EFB2_02962	0.68	+2.1
3,093,613	+		EFB2_02962	0.68	+0.0
3,093,617	+		EFB2_02962	0.68	-0.5
3,093,617	+		EFB2_02962	0.68	-1.0
3,093,618	-		EFB2_02962	0.68	+1.7
3,093,618	-		EFB2_02962	0.68	+2.5
3,093,618	-		EFB2_02962	0.68	+0.7
3,093,622	-		EFB2_02962	0.69	+1.3
3,093,660	+		EFB2_02962	0.72	-2.8
3,093,661	-		EFB2_02962	0.72	-0.8
3,093,661	-		EFB2_02962	0.72	+2.0
3,093,663	-		EFB2_02962	0.72	-2.1
3,093,677	-		EFB2_02962	0.73	-0.5
3,093,677	-		EFB2_02962	0.73	+1.5
3,093,695	+		EFB2_02962	0.75	+1.5
3,093,717	-		EFB2_02962	0.76	+0.5
3,093,738	-		EFB2_02962	0.78	+2.3
3,093,741	-		EFB2_02962	0.78	-0.4
3,093,741	-		EFB2_02962	0.78	+0.4
3,093,741	-		EFB2_02962	0.78	-1.3
3,093,800	+		EFB2_02962	0.83	+1.1
3,093,801	-		EFB2_02962	0.83	+0.8
3,093,804	+		EFB2_02962	0.83	-3.3
3,093,805	-		EFB2_02962	0.83	-1.2
3,093,830	+		EFB2_02962	0.85	-0.5
3,093,831	-		EFB2_02962	0.85	+1.4
3,093,831	-		EFB2_02962	0.85	-0.9
3,093,831	-		EFB2_02962	0.85	-0.0
3,093,849	+		EFB2_02962	0.87	-2.8
3,093,850	-		EFB2_02962	0.87	+0.5
3,093,850	-		EFB2_02962	0.87	-0.5
3,093,855	+		EFB2_02962	0.87	-0.7
3,093,855	+		EFB2_02962	0.87	+1.1
3,093,856	-		EFB2_02962	0.87	-1.4
3,093,856	-		EFB2_02962	0.87	+0.2
3,093,856	-		EFB2_02962	0.87	+0.4
3,093,856	-		EFB2_02962	0.87	-0.5
3,093,856	-		EFB2_02962	0.87	+0.8
3,093,856	-		EFB2_02962	0.87	+1.9
3,093,856	-		EFB2_02962	0.87	+1.3
3,093,936	+				+0.6
3,093,953	+				+0.9
3,093,958	-				-2.5
3,093,983	+				+1.7
3,093,984	-				-0.5
3,093,987	+				-0.5
3,093,987	+				+0.2
3,093,987	+				-0.0
3,093,987	+				-0.4
3,093,987	+				+2.0
3,093,988	-				+0.6
3,093,988	-				+0.2
3,094,021	-				-0.7
3,094,023	+				+0.3
3,094,043	-				-1.5
3,094,055	+				+1.0
3,094,060	-				+0.6
3,094,105	+				-0.4
3,094,105	+				+0.8
3,094,105	+				+0.1
3,094,112	+				+1.3
3,094,113	-				-0.5
3,094,113	-				+0.0
3,094,117	+				-0.9
3,094,135	-				-0.7
3,094,197	-				-0.0
3,094,209	+				+0.9
3,094,209	+				-0.6
3,094,209	+				-0.1
3,094,212	+				+0.2
3,094,212	+				+1.1
3,094,213	-				+0.5
3,094,213	-				+0.6
3,094,235	+				-1.5
3,094,292	-				-1.4
3,094,334	+		EFB2_02963	0.15	-2.5
3,094,334	+		EFB2_02963	0.15	+0.1
3,094,334	+		EFB2_02963	0.15	-1.4
3,094,334	+		EFB2_02963	0.15	-2.0
3,094,335	-		EFB2_02963	0.15	-1.1
3,094,357	+		EFB2_02963	0.18	+0.6
3,094,357	+		EFB2_02963	0.18	+0.6
3,094,358	-		EFB2_02963	0.18	-1.7
3,094,358	-		EFB2_02963	0.18	-1.9
3,094,358	-		EFB2_02963	0.18	-0.7
3,094,361	+		EFB2_02963	0.18	-0.0
3,094,361	+		EFB2_02963	0.18	+2.5
3,094,361	+		EFB2_02963	0.18	-0.2
3,094,361	+		EFB2_02963	0.18	-0.8
3,094,361	+		EFB2_02963	0.18	+0.7
3,094,382	-		EFB2_02963	0.21	-2.0
3,094,382	-		EFB2_02963	0.21	-0.2
3,094,382	-		EFB2_02963	0.21	-1.4
3,094,415	-		EFB2_02963	0.25	-0.8
3,094,415	-		EFB2_02963	0.25	+1.9
3,094,415	-		EFB2_02963	0.25	+0.5
3,094,415	-		EFB2_02963	0.25	-1.6
3,094,434	+		EFB2_02963	0.27	-1.6
3,094,435	-		EFB2_02963	0.28	+1.2
3,094,459	+		EFB2_02963	0.31	-0.6
3,094,459	+		EFB2_02963	0.31	-0.2
3,094,459	+		EFB2_02963	0.31	+1.5
3,094,459	+		EFB2_02963	0.31	-1.5
3,094,460	-		EFB2_02963	0.31	-1.3
3,094,460	-		EFB2_02963	0.31	+1.1
3,094,483	+		EFB2_02963	0.34	-0.6
3,094,484	-		EFB2_02963	0.34	+1.7
3,094,486	-		EFB2_02963	0.34	-2.3
3,094,486	-		EFB2_02963	0.34	+1.8
3,094,486	-		EFB2_02963	0.34	+0.5
3,094,523	+		EFB2_02963	0.39	+1.4
3,094,523	+		EFB2_02963	0.39	-1.2
3,094,523	+		EFB2_02963	0.39	-0.3
3,094,523	+		EFB2_02963	0.39	+1.6
3,094,523	+		EFB2_02963	0.39	+0.7
3,094,524	-		EFB2_02963	0.39	+2.3
3,094,524	-		EFB2_02963	0.39	+0.7
3,094,524	-		EFB2_02963	0.39	-0.7
3,094,524	-		EFB2_02963	0.39	-0.8
3,094,526	-		EFB2_02963	0.39	-1.7
3,094,573	-		EFB2_02963	0.45	-2.0
3,094,573	-		EFB2_02963	0.45	-1.4
3,094,573	-		EFB2_02963	0.45	+0.9
3,094,573	-		EFB2_02963	0.45	-1.5
3,094,606	+		EFB2_02963	0.49	+1.3
3,094,621	-		EFB2_02963	0.51	+0.7
3,094,621	-		EFB2_02963	0.51	-0.3
3,094,621	-		EFB2_02963	0.51	+2.6
3,094,624	+		EFB2_02963	0.51	+0.6
3,094,625	-		EFB2_02963	0.52	-1.9
3,094,641	+		EFB2_02963	0.54	-2.3
3,094,641	+		EFB2_02963	0.54	+2.6
3,094,642	-		EFB2_02963	0.54	-1.4
3,094,642	-		EFB2_02963	0.54	+1.1
3,094,642	-		EFB2_02963	0.54	-3.3
3,094,642	-		EFB2_02963	0.54	-0.5
3,094,717	+		EFB2_02963	0.63	+0.1
3,094,717	+		EFB2_02963	0.63	+1.2
3,094,719	+		EFB2_02963	0.63	+0.7
3,094,719	+		EFB2_02963	0.63	-0.7
3,094,719	+		EFB2_02963	0.63	-2.6
3,094,719	+		EFB2_02963	0.63	-0.0
3,094,719	+		EFB2_02963	0.63	-1.8
3,094,719	+		EFB2_02963	0.63	+0.8
3,094,719	+		EFB2_02963	0.63	+0.8
3,094,719	+		EFB2_02963	0.63	-0.5
3,094,719	+		EFB2_02963	0.63	+1.0
3,094,719	+		EFB2_02963	0.63	-1.5
3,094,719	+		EFB2_02963	0.63	-1.4
3,094,719	+		EFB2_02963	0.63	-2.4
3,094,719	+		EFB2_02963	0.63	+4.9
3,094,719	+		EFB2_02963	0.63	-0.3
3,094,719	+		EFB2_02963	0.63	-3.1
3,094,719	+		EFB2_02963	0.63	-1.0
3,094,719	+		EFB2_02963	0.63	-0.3
3,094,719	+		EFB2_02963	0.63	+1.0
3,094,720	-		EFB2_02963	0.64	-3.0
3,094,720	-		EFB2_02963	0.64	+2.7
3,094,720	-		EFB2_02963	0.64	+0.4
3,094,720	-		EFB2_02963	0.64	+0.9
3,094,720	-		EFB2_02963	0.64	+0.0
3,094,720	-		EFB2_02963	0.64	-0.7
3,094,720	-		EFB2_02963	0.64	-1.7
3,094,720	-		EFB2_02963	0.64	+1.8
3,094,720	-		EFB2_02963	0.64	-2.5
3,094,720	-		EFB2_02963	0.64	-1.6
3,094,720	-		EFB2_02963	0.64	+0.1
3,094,720	-		EFB2_02963	0.64	+1.3
3,094,720	-		EFB2_02963	0.64	-2.7
3,094,720	-		EFB2_02963	0.64	+1.0
3,094,720	-		EFB2_02963	0.64	-0.8
3,094,720	-		EFB2_02963	0.64	+0.6
3,094,720	-		EFB2_02963	0.64	-0.5
3,094,720	-		EFB2_02963	0.64	+0.5
3,094,720	-		EFB2_02963	0.64	-2.7
3,094,720	-		EFB2_02963	0.64	-1.0
3,094,720	-		EFB2_02963	0.64	-1.8
3,094,720	-		EFB2_02963	0.64	-0.2
3,094,720	-		EFB2_02963	0.64	-2.0
3,094,720	-		EFB2_02963	0.64	-3.4
3,094,720	-		EFB2_02963	0.64	+1.7
3,094,720	-		EFB2_02963	0.64	-0.4
3,094,720	-		EFB2_02963	0.64	+0.6
3,094,720	-		EFB2_02963	0.64	-1.0
3,094,720	-		EFB2_02963	0.64	-1.2
3,094,720	-		EFB2_02963	0.64	+0.5
3,094,720	-		EFB2_02963	0.64	-1.9
3,094,734	+		EFB2_02963	0.65	-0.9
3,094,735	-		EFB2_02963	0.65	+1.0
3,094,735	-		EFB2_02963	0.65	+1.3
3,094,741	+		EFB2_02963	0.66	+1.4
3,094,741	+		EFB2_02963	0.66	-0.2
3,094,741	+		EFB2_02963	0.66	+0.8
3,094,742	-		EFB2_02963	0.66	-0.7
3,094,742	-		EFB2_02963	0.66	-0.1
3,094,742	-		EFB2_02963	0.66	-1.2
3,094,742	-		EFB2_02963	0.66	-0.9
3,094,765	+		EFB2_02963	0.69	-1.6
3,094,765	+		EFB2_02963	0.69	-0.9
3,094,767	+		EFB2_02963	0.69	+3.9
3,094,767	+		EFB2_02963	0.69	-2.7
3,094,767	+		EFB2_02963	0.69	-0.7
3,094,773	+		EFB2_02963	0.70	+1.9
3,094,773	+		EFB2_02963	0.70	+2.3
3,094,773	+		EFB2_02963	0.70	-0.9
3,094,773	+		EFB2_02963	0.70	+1.1
3,094,773	+		EFB2_02963	0.70	-0.5
3,094,773	+		EFB2_02963	0.70	+0.3
3,094,773	+		EFB2_02963	0.70	-2.5
3,094,773	+		EFB2_02963	0.70	-0.4
3,094,774	-		EFB2_02963	0.70	+1.3
3,094,774	-		EFB2_02963	0.70	+1.0
3,094,774	-		EFB2_02963	0.70	+1.2
3,094,774	-		EFB2_02963	0.70	-2.4
3,094,774	-		EFB2_02963	0.70	+0.8
3,094,774	-		EFB2_02963	0.70	+0.7
3,094,799	+		EFB2_02963	0.73	+1.1
3,094,800	-		EFB2_02963	0.74	+0.3
3,094,800	-		EFB2_02963	0.74	-3.7
3,094,800	-		EFB2_02963	0.74	-1.4
3,094,800	-		EFB2_02963	0.74	+1.7
3,094,800	-		EFB2_02963	0.74	-2.0
3,094,817	-		EFB2_02963	0.76	-0.4
3,094,818	+		EFB2_02963	0.76	+0.8
3,094,818	+		EFB2_02963	0.76	-2.7
3,094,818	+		EFB2_02963	0.76	+1.3
3,094,819	-		EFB2_02963	0.76	+2.3
3,094,819	-		EFB2_02963	0.76	+0.1
3,094,819	-		EFB2_02963	0.76	-0.0
3,094,879	+		EFB2_02963	0.84	-0.2
3,094,879	+		EFB2_02963	0.84	+0.4
3,094,879	+		EFB2_02963	0.84	-2.6
3,094,880	-		EFB2_02963	0.84	+0.3
3,094,887	+		EFB2_02963	0.85	+0.6
3,094,887	+		EFB2_02963	0.85	+0.7
3,094,887	+		EFB2_02963	0.85	-2.7
3,094,924	+		EFB2_02963	0.89	+0.6
3,094,924	+		EFB2_02963	0.89	+1.3
3,094,925	-		EFB2_02963	0.89	+0.9
3,094,925	-		EFB2_02963	0.89	+0.7
3,094,925	-		EFB2_02963	0.89	+0.2
3,094,930	+				-1.5
3,094,931	-				-0.2
3,094,982	+				+0.4
3,094,982	+				+0.3
3,094,982	+				-1.9
3,094,982	+				-0.9
3,094,982	+				+0.8
3,094,983	-				+1.1
3,094,983	-				-0.7
3,094,983	-				+1.0
3,094,983	-				-1.3
3,094,983	-				-0.0
3,094,983	-				-1.5
3,094,983	-				-0.9
3,094,983	-				-1.6
3,094,987	+				+0.3
3,094,987	+				+2.1
3,094,987	+				-0.2
3,094,988	-				-0.7
3,094,988	-				+2.0
3,094,988	-				-1.3
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