Strain Fitness in Escherichia fergusonii Becca around EFB2_02961

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,091,490	+		EFB2_02960	0.72	+0.3
3,091,490	+		EFB2_02960	0.72	-2.5
3,091,491	-		EFB2_02960	0.72	-3.1
3,091,491	-		EFB2_02960	0.72	-0.1
3,091,496	-		EFB2_02960	0.73	-0.3
3,091,512	-		EFB2_02960	0.74	+0.9
3,091,512	-		EFB2_02960	0.74	+0.7
3,091,523	-		EFB2_02960	0.75	+0.5
3,091,523	-		EFB2_02960	0.75	+0.1
3,091,523	-		EFB2_02960	0.75	+0.2
3,091,541	+		EFB2_02960	0.77	+1.1
3,091,541	+		EFB2_02960	0.77	-0.0
3,091,541	+		EFB2_02960	0.77	-1.9
3,091,541	+		EFB2_02960	0.77	+1.5
3,091,541	+		EFB2_02960	0.77	+1.4
3,091,541	+		EFB2_02960	0.77	+2.3
3,091,541	+		EFB2_02960	0.77	-1.9
3,091,541	+		EFB2_02960	0.77	-1.4
3,091,541	+		EFB2_02960	0.77	+0.1
3,091,541	+		EFB2_02960	0.77	-0.3
3,091,541	+		EFB2_02960	0.77	-1.3
3,091,542	-		EFB2_02960	0.77	-0.3
3,091,542	-		EFB2_02960	0.77	-1.8
3,091,542	-		EFB2_02960	0.77	-1.7
3,091,542	-		EFB2_02960	0.77	-0.3
3,091,542	-		EFB2_02960	0.77	+0.1
3,091,542	-		EFB2_02960	0.77	-1.7
3,091,542	-		EFB2_02960	0.77	-1.2
3,091,542	-		EFB2_02960	0.77	-2.0
3,091,542	-		EFB2_02960	0.77	+0.8
3,091,542	-		EFB2_02960	0.77	-0.7
3,091,542	-		EFB2_02960	0.77	+1.7
3,091,542	-		EFB2_02960	0.77	-2.7
3,091,542	-		EFB2_02960	0.77	-1.2
3,091,542	-		EFB2_02960	0.77	-2.7
3,091,542	-		EFB2_02960	0.77	-0.4
3,091,598	+		EFB2_02960	0.82	-1.2
3,091,649	+		EFB2_02960	0.86	-1.8
3,091,649	+		EFB2_02960	0.86	-1.7
3,091,649	+		EFB2_02960	0.86	-0.5
3,091,649	+		EFB2_02960	0.86	-0.9
3,091,649	+		EFB2_02960	0.86	-2.5
3,091,649	+		EFB2_02960	0.86	-1.0
3,091,649	+		EFB2_02960	0.86	-1.9
3,091,650	-		EFB2_02960	0.86	-0.6
3,091,650	-		EFB2_02960	0.86	+0.6
3,091,650	-		EFB2_02960	0.86	+1.9
3,091,650	-		EFB2_02960	0.86	-1.0
3,091,650	-		EFB2_02960	0.86	-2.0
3,091,650	-		EFB2_02960	0.86	-0.8
3,091,650	-		EFB2_02960	0.86	+1.2
3,091,650	-		EFB2_02960	0.86	-2.2
3,091,650	-		EFB2_02960	0.86	+0.2
3,091,667	+		EFB2_02960	0.88	-1.0
3,091,668	-		EFB2_02960	0.88	-0.5
3,091,678	+		EFB2_02960	0.89	+2.0
3,091,678	+		EFB2_02960	0.89	-0.5
3,091,678	+		EFB2_02960	0.89	+2.1
3,091,679	-		EFB2_02960	0.89	-0.1
3,091,679	-		EFB2_02960	0.89	+0.9
3,091,679	-		EFB2_02960	0.89	-0.7
3,091,679	-		EFB2_02960	0.89	-1.7
3,091,679	-		EFB2_02960	0.89	-2.3
3,091,679	-		EFB2_02960	0.89	-1.2
3,091,679	-		EFB2_02960	0.89	+0.8
3,091,679	-		EFB2_02960	0.89	+0.3
3,091,679	-		EFB2_02960	0.89	+0.4
3,091,710	+				-0.0
3,091,711	-				-0.8
3,091,711	-				-1.2
3,091,711	-				+0.2
3,091,711	-				-0.0
3,091,720	-				-2.5
3,091,735	-				-2.8
3,091,737	+				-2.6
3,091,737	+				+2.4
3,091,738	-				+0.1
3,091,738	-				+1.1
3,091,763	-				-1.8
3,091,767	+				+0.8
3,091,768	-				-2.2
3,091,768	-				-1.4
3,091,777	+				+4.0
3,091,778	-				-2.2
3,091,778	-				-2.4
3,091,778	-				+0.1
3,091,778	-				+0.3
3,091,778	-				+0.3
3,091,781	-				-1.3
3,091,822	-				+0.2
3,091,828	+				-0.9
3,091,828	+				-0.9
3,091,828	+				-1.6
3,091,828	+				+0.7
3,091,829	-				-0.5
3,091,829	-				-0.5
3,091,829	-				+3.9
3,091,829	-				+0.7
3,091,829	-				-0.7
3,091,831	-				+1.1
3,091,831	-				+4.0
3,091,832	+				-1.5
3,091,832	+				+0.7
3,091,832	+				+1.0
3,091,832	+				+2.5
3,091,832	+				-2.6
3,091,832	+				-0.5
3,091,832	+				-0.8
3,091,832	+				+0.1
3,091,832	+				-0.0
3,091,832	+				-1.2
3,091,832	+				+0.5
3,091,832	+				+0.6
3,091,832	+				+0.5
3,091,832	+				+0.3
3,091,832	+				+1.0
3,091,832	+				-2.3
3,091,833	-				-2.2
3,091,833	-				+1.7
3,091,833	-				+0.3
3,091,833	-				-2.3
3,091,833	-				-0.3
3,091,833	-				+0.7
3,091,833	-				+1.2
3,091,833	-				-0.6
3,091,833	-				-0.2
3,091,833	-				-1.2
3,091,833	-				+0.5
3,091,833	-				-1.0
3,091,839	+				+1.2
3,091,839	+				+1.3
3,091,840	-				-0.6
3,091,840	-				-1.0
3,091,840	-				+0.3
3,091,840	-				-3.7
3,091,852	-				+0.0
3,091,852	-				+0.3
3,091,852	-				-0.7
3,091,882	+				-1.0
3,091,883	-				+0.8
3,091,883	-				-2.9
3,091,883	-				+1.7
3,091,883	-				+0.6
3,091,883	-				+2.4
3,091,886	+				-0.0
3,091,887	-				-2.6
3,091,887	-				-1.0
3,091,887	-				-3.0
3,091,899	+				-1.3
3,091,900	-				-0.7
3,091,900	-				+0.7
3,091,900	-				-1.6
3,091,905	+				+0.3
3,091,905	+				+2.3
3,091,905	+				-1.2
3,091,905	+				+0.1
3,091,906	-				-1.9
3,091,906	-				+0.6
3,091,943	+				+0.4
3,091,943	+				+1.0
3,091,943	+				+2.1
3,091,944	-				+1.3
3,091,944	-				-0.8
3,091,944	-				-0.5
3,091,975	+				+0.3
3,091,976	-				-2.8
3,091,976	-				-2.7
3,091,976	-				-0.1
3,091,976	-				+1.4
3,091,976	-				+0.1
3,092,005	+				-1.6
3,092,005	+				-0.7
3,092,005	+				+2.9
3,092,005	+				-0.3
3,092,005	+				+1.3
3,092,005	+				-1.7
3,092,006	-				-0.6
3,092,006	-				+0.8
3,092,006	-				-1.6
3,092,006	-				-2.2
3,092,006	-				-0.5
3,092,006	-				+1.1
3,092,006	-				+1.3
3,092,006	-				+0.1
3,092,006	-				+0.2
3,092,006	-				+2.4
3,092,033	-				+2.0
3,092,033	-				+0.7
3,092,050	+				+1.6
3,092,111	-				-3.2
3,092,123	-				+0.3
3,092,123	-				+0.4
3,092,123	-				+0.4
3,092,125	+				-3.1
3,092,125	+				+0.7
3,092,125	+				-1.1
3,092,126	-				-0.4
3,092,142	+				+1.6
3,092,148	-				-0.0
3,092,148	-				-0.7
3,092,148	-				+0.8
3,092,148	-				-2.0
3,092,155	+				+0.6
3,092,155	+				-0.3
3,092,156	-				-0.2
3,092,156	-				-2.0
3,092,156	-				+0.4
3,092,157	+				+1.3
3,092,157	+				+2.1
3,092,180	+				+0.3
3,092,180	+				-0.7
3,092,180	+				+2.7
3,092,180	+				+0.3
3,092,180	+				-0.4
3,092,180	+				-0.9
3,092,180	+				-1.0
3,092,181	-				+2.1
3,092,181	-				+0.3
3,092,182	+				+4.0
3,092,182	+				-1.7
3,092,183	-				-0.1
3,092,183	-				+0.1
3,092,183	-				-0.7
3,092,210	+				-0.1
3,092,210	+				+0.1
3,092,210	+				+1.3
3,092,210	+				-2.6
3,092,211	-				-0.6
3,092,211	-				+0.3
3,092,211	-				-1.9
3,092,211	-				+2.1
3,092,254	+				+1.1
3,092,254	+				+2.9
3,092,255	-				+1.1
3,092,263	+				+0.3
3,092,264	-				+0.5
3,092,289	+				-1.7
3,092,290	-				+0.0
3,092,290	-				+0.9
3,092,290	-				+0.4
3,092,294	+				-0.5
3,092,294	+				+0.5
3,092,299	+				-0.9
3,092,299	+				+0.3
3,092,299	+				-0.5
3,092,300	-				+1.4
3,092,300	-				+1.1
3,092,300	-				+1.0
3,092,300	-				+0.8
3,092,300	-				-0.0
3,092,300	-				-0.9
3,092,300	-				-2.2
3,092,300	-				+0.9
3,092,300	-				+0.1
3,092,303	-				-0.5
3,092,336	+				+0.3
3,092,336	+				+0.2
3,092,336	+				+0.3
3,092,336	+				+1.0
3,092,337	-				-1.9
3,092,337	-				+0.8
3,092,337	-				-2.9
3,092,356	+				+0.7
3,092,356	+				-1.0
3,092,356	+				-1.6
3,092,356	+				+1.5
3,092,357	-				+0.3
3,092,357	-				+2.3
3,092,357	-				-2.6
3,092,357	-				+0.6
3,092,376	+				-1.3
3,092,377	-				+0.9
3,092,377	-				+0.5
3,092,377	-				-2.3
3,092,386	+				+0.5
3,092,397	+				-1.0
3,092,397	+				+0.4
3,092,397	+				-0.9
3,092,397	+				-2.1
3,092,433	+				+1.4
3,092,433	+				+1.5
3,092,433	+				+1.6
3,092,433	+				-0.8
3,092,433	+				+0.3
3,092,433	+				+0.7
3,092,433	+				-0.3
3,092,433	+				+1.7
3,092,433	+				-0.9
3,092,433	+				+2.3
3,092,433	+				-1.4
3,092,434	-				-1.0
3,092,434	-				+0.1
3,092,434	-				-1.2
3,092,434	-				+1.7
3,092,434	-				-1.3
3,092,434	-				+1.6
3,092,434	-				+0.2
3,092,434	-				+0.1
3,092,434	-				-1.4
3,092,434	-				-0.2
3,092,434	-				-0.3
3,092,434	-				-0.7
3,092,434	-				+0.9
3,092,434	-				-0.5
3,092,434	-				+0.6
3,092,434	-				+0.3
3,092,435	+				+0.2
3,092,435	+				+0.2
3,092,436	-				+0.6
3,092,436	-				+1.0
3,092,436	-				-2.6
3,092,436	-				+0.2
3,092,436	-				+0.8
3,092,442	+				+0.9
3,092,442	+				-0.9
3,092,442	+				+1.8
3,092,443	-				-1.6
3,092,443	-				-0.9
3,092,443	-				-1.0
3,092,443	-				+0.7
3,092,444	+				+1.5
3,092,444	+				-0.0
3,092,444	+				-0.0
3,092,444	+				-0.5
3,092,444	+				+2.1
3,092,444	+				-0.2
3,092,445	-				-2.4
3,092,445	-				+0.9
3,092,445	-				-2.1
3,092,445	-				-0.4
3,092,445	-				-1.6
3,092,445	-				-0.0
3,092,445	-				-0.3
3,092,445	-				-0.5
3,092,445	-				-1.9
3,092,446	+				-1.0
3,092,446	+				+2.4
3,092,446	+				-0.2
3,092,446	+				-0.0
3,092,446	+				-1.3
3,092,446	+				+0.7
3,092,446	+				+0.7
3,092,446	+				-0.2
3,092,447	-				-1.2
3,092,447	-				-1.9
3,092,447	-				-0.4
3,092,447	-				+0.7
3,092,447	-				+0.4
3,092,447	-				-1.9
3,092,447	-				-2.8
3,092,447	-				+1.0
3,092,447	-				-0.9
3,092,447	-				-1.3
3,092,447	-				+0.6
3,092,447	-				+0.1
3,092,447	-				-2.0
3,092,447	-				+0.2
3,092,455	+				-0.5
3,092,456	-				+0.4
3,092,456	-				-0.1
3,092,456	-				-2.0
3,092,456	-				-0.3
3,092,462	+				-0.3
3,092,462	+				-0.8
3,092,462	+				+0.5
3,092,462	+				-1.3
3,092,462	+				-1.2
3,092,462	+				-0.3
3,092,462	+				+1.1
3,092,462	+				+2.5
3,092,462	+				-0.7
3,092,462	+				-1.5
3,092,463	-				-0.8
3,092,463	-				-2.4
3,092,463	-				+1.0
3,092,463	-				+2.5
3,092,463	-				-1.4
3,092,463	-				-0.4
3,092,463	-				-0.0
3,092,463	-				+1.6
3,092,463	-				-1.5
3,092,463	-				+0.8
3,092,463	-				-0.0
3,092,463	-				+1.8
3,092,497	+		EFB2_02961	0.17	-2.4
3,092,497	+		EFB2_02961	0.17	-0.3
3,092,498	-		EFB2_02961	0.18	-0.0
3,092,498	-		EFB2_02961	0.18	+1.7
3,092,558	+		EFB2_02961	0.51	-2.5
3,092,558	+		EFB2_02961	0.51	+0.7
3,092,559	-		EFB2_02961	0.51	-2.8
3,092,559	-		EFB2_02961	0.51	-2.6
3,092,600	-		EFB2_02961	0.74	+0.8
3,092,600	-		EFB2_02961	0.74	-1.0
3,092,600	-		EFB2_02961	0.74	-3.2
3,092,600	-		EFB2_02961	0.74	+1.2
3,092,634	+				+0.3
3,092,634	+				-1.5
3,092,645	+				+2.2
3,092,649	+				-0.6
3,092,649	+				-1.0
3,092,650	-				-1.2
3,092,650	-				-2.4
3,092,650	-				-2.7
3,092,650	-				+1.3
3,092,650	-				+0.3
3,092,711	+				-0.3
3,092,711	+				+2.3
3,092,711	+				-2.4
3,092,711	+				+0.7
3,092,712	-				+0.7
3,092,712	-				+2.1
3,092,712	-				+4.0
3,092,712	-				+0.7
3,092,712	-				+0.2
3,092,712	-				+0.2
3,092,725	-				-2.9
3,092,725	-				+0.4
3,092,732	-				-3.0
3,092,732	-				+0.5
3,092,732	-				-0.6
3,092,732	-				-1.5
3,092,769	+				+0.3
3,092,769	+				+0.7
3,092,771	+				-0.8
3,092,771	+				-2.6
3,092,771	+				-1.9
3,092,771	+				+2.3
3,092,771	+				+0.2
3,092,771	+				-0.6
3,092,771	+				-1.7
3,092,771	+				-0.3
3,092,771	+				-1.0
3,092,771	+				-2.5
3,092,930	+		EFB2_02962	0.14	-0.3
3,092,937	-		EFB2_02962	0.14	-0.7
3,093,107	+		EFB2_02962	0.28	-2.0
3,093,112	+		EFB2_02962	0.28	-1.9
3,093,112	+		EFB2_02962	0.28	-2.5
3,093,116	+		EFB2_02962	0.29	+0.0
3,093,117	-		EFB2_02962	0.29	+0.6
3,093,117	-		EFB2_02962	0.29	-1.4
3,093,133	+		EFB2_02962	0.30	-1.6
3,093,133	+		EFB2_02962	0.30	+1.9
3,093,134	-		EFB2_02962	0.30	+1.0
3,093,134	-		EFB2_02962	0.30	-1.5
3,093,134	-		EFB2_02962	0.30	-1.0
3,093,134	-		EFB2_02962	0.30	-0.7
3,093,139	+		EFB2_02962	0.30	+2.3
3,093,139	+		EFB2_02962	0.30	+1.8
3,093,140	-		EFB2_02962	0.31	+0.9
3,093,140	-		EFB2_02962	0.31	-0.7
3,093,140	-		EFB2_02962	0.31	-1.2
3,093,140	-		EFB2_02962	0.31	-1.4
3,093,198	+		EFB2_02962	0.35	+0.0
3,093,199	-		EFB2_02962	0.35	+1.4
3,093,234	+		EFB2_02962	0.38	-1.5
3,093,235	-		EFB2_02962	0.38	-1.0
3,093,263	+		EFB2_02962	0.40	-0.7
3,093,264	-		EFB2_02962	0.40	+1.1
3,093,264	-		EFB2_02962	0.40	-0.0
3,093,264	-		EFB2_02962	0.40	+0.3
3,093,264	-		EFB2_02962	0.40	+1.3
3,093,264	-		EFB2_02962	0.40	-0.3
3,093,267	+		EFB2_02962	0.41	+1.4
3,093,267	+		EFB2_02962	0.41	-1.2
3,093,268	-		EFB2_02962	0.41	+0.6
3,093,303	+		EFB2_02962	0.43	-0.5
3,093,304	-		EFB2_02962	0.44	+0.6
3,093,306	+		EFB2_02962	0.44	-0.0
3,093,306	+		EFB2_02962	0.44	+2.0
3,093,306	+		EFB2_02962	0.44	-0.7
3,093,306	+		EFB2_02962	0.44	+0.1
3,093,307	-		EFB2_02962	0.44	+0.8
3,093,307	-		EFB2_02962	0.44	+1.7
3,093,307	-		EFB2_02962	0.44	+0.3
3,093,307	-		EFB2_02962	0.44	-0.7
3,093,315	+		EFB2_02962	0.44	-3.0
3,093,315	+		EFB2_02962	0.44	-1.9
3,093,315	+		EFB2_02962	0.44	+1.4
3,093,315	+		EFB2_02962	0.44	+0.8
3,093,315	+		EFB2_02962	0.44	+0.7
3,093,316	-		EFB2_02962	0.44	-1.7
3,093,316	-		EFB2_02962	0.44	+0.5
3,093,316	-		EFB2_02962	0.44	-0.3
3,093,316	-		EFB2_02962	0.44	+0.6
3,093,321	-		EFB2_02962	0.45	-0.3
3,093,321	-		EFB2_02962	0.45	+0.3
3,093,342	+		EFB2_02962	0.47	-0.9
3,093,342	+		EFB2_02962	0.47	+2.1
3,093,342	+		EFB2_02962	0.47	-0.7
3,093,343	-		EFB2_02962	0.47	-0.8
3,093,343	-		EFB2_02962	0.47	+1.9
3,093,343	-		EFB2_02962	0.47	+2.0
3,093,343	-		EFB2_02962	0.47	+2.4
3,093,343	-		EFB2_02962	0.47	-1.1
3,093,351	+		EFB2_02962	0.47	-1.5
3,093,351	+		EFB2_02962	0.47	-1.1
3,093,351	+		EFB2_02962	0.47	-0.0
3,093,351	+		EFB2_02962	0.47	+0.4
3,093,351	+		EFB2_02962	0.47	-0.7
3,093,351	+		EFB2_02962	0.47	+1.7
3,093,352	-		EFB2_02962	0.47	+0.7
3,093,352	-		EFB2_02962	0.47	-0.0
3,093,352	-		EFB2_02962	0.47	-0.3
3,093,352	-		EFB2_02962	0.47	-0.5
3,093,352	-		EFB2_02962	0.47	+0.3
3,093,352	-		EFB2_02962	0.47	-3.4
3,093,356	-		EFB2_02962	0.48	+0.8
3,093,426	+		EFB2_02962	0.53	-0.3
3,093,441	-		EFB2_02962	0.54	+1.4
3,093,441	-		EFB2_02962	0.54	-0.6
3,093,475	-		EFB2_02962	0.57	+0.3
3,093,475	-		EFB2_02962	0.57	+2.1
3,093,516	+		EFB2_02962	0.60	-1.1
3,093,517	-		EFB2_02962	0.60	-1.1
3,093,517	-		EFB2_02962	0.60	-1.7
3,093,538	+		EFB2_02962	0.62	+0.8
3,093,539	-		EFB2_02962	0.62	-0.1
3,093,539	-		EFB2_02962	0.62	+0.7
3,093,586	-		EFB2_02962	0.66	-1.5
3,093,591	+		EFB2_02962	0.66	+0.4
3,093,613	+		EFB2_02962	0.68	+2.1
3,093,613	+		EFB2_02962	0.68	+0.0
3,093,617	+		EFB2_02962	0.68	-0.5
3,093,617	+		EFB2_02962	0.68	-1.0
3,093,618	-		EFB2_02962	0.68	+1.7
3,093,618	-		EFB2_02962	0.68	+2.5
3,093,618	-		EFB2_02962	0.68	+0.7
3,093,622	-		EFB2_02962	0.69	+1.3