Strain Fitness in Escherichia fergusonii Becca around EFB2_02688

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,844,946	-		EFB2_02687	0.35	-1.7
2,844,946	-		EFB2_02687	0.35	+0.7
2,845,067	-		EFB2_02687	0.45	+0.8
2,845,110	+		EFB2_02687	0.49	+1.5
2,845,110	+		EFB2_02687	0.49	+0.1
2,845,110	+		EFB2_02687	0.49	-1.0
2,845,110	+		EFB2_02687	0.49	-1.7
2,845,111	-		EFB2_02687	0.49	+1.5
2,845,111	-		EFB2_02687	0.49	-2.3
2,845,111	-		EFB2_02687	0.49	-0.4
2,845,112	+		EFB2_02687	0.49	-0.3
2,845,112	+		EFB2_02687	0.49	+1.2
2,845,112	+		EFB2_02687	0.49	+0.1
2,845,142	+		EFB2_02687	0.51	+2.0
2,845,143	-		EFB2_02687	0.51	-0.7
2,845,149	+		EFB2_02687	0.52	-0.9
2,845,156	+		EFB2_02687	0.52	+0.5
2,845,157	-		EFB2_02687	0.53	-1.6
2,845,157	-		EFB2_02687	0.53	+0.7
2,845,159	+		EFB2_02687	0.53	+0.9
2,845,160	-		EFB2_02687	0.53	+0.1
2,845,175	+		EFB2_02687	0.54	-2.2
2,845,176	-		EFB2_02687	0.54	+1.2
2,845,176	-		EFB2_02687	0.54	-0.9
2,845,176	-		EFB2_02687	0.54	-0.7
2,845,176	-		EFB2_02687	0.54	+3.0
2,845,176	-		EFB2_02687	0.54	+0.7
2,845,176	-		EFB2_02687	0.54	-0.7
2,845,176	-		EFB2_02687	0.54	+0.5
2,845,179	+		EFB2_02687	0.54	-2.4
2,845,179	+		EFB2_02687	0.54	+1.1
2,845,179	+		EFB2_02687	0.54	-2.0
2,845,179	+		EFB2_02687	0.54	+0.4
2,845,179	+		EFB2_02687	0.54	+0.7
2,845,180	-		EFB2_02687	0.54	+0.7
2,845,180	-		EFB2_02687	0.54	+0.5
2,845,180	-		EFB2_02687	0.54	-2.0
2,845,240	+		EFB2_02687	0.59	-0.7
2,845,240	+		EFB2_02687	0.59	-1.7
2,845,240	+		EFB2_02687	0.59	-0.4
2,845,240	+		EFB2_02687	0.59	+1.2
2,845,240	+		EFB2_02687	0.59	+1.5
2,845,241	-		EFB2_02687	0.60	+0.5
2,845,241	-		EFB2_02687	0.60	+1.6
2,845,263	+		EFB2_02687	0.61	+1.0
2,845,263	+		EFB2_02687	0.61	-3.4
2,845,409	+		EFB2_02687	0.73	+0.2
2,845,427	-		EFB2_02687	0.75	-1.5
2,845,427	-		EFB2_02687	0.75	+0.1
2,845,427	-		EFB2_02687	0.75	+0.7
2,845,427	-		EFB2_02687	0.75	+1.6
2,845,427	-		EFB2_02687	0.75	-1.3
2,845,427	-		EFB2_02687	0.75	-1.6
2,845,427	-		EFB2_02687	0.75	+3.8
2,845,427	-		EFB2_02687	0.75	-1.5
2,845,427	-		EFB2_02687	0.75	+0.2
2,845,427	-		EFB2_02687	0.75	+0.9
2,845,427	-		EFB2_02687	0.75	-0.8
2,845,456	+		EFB2_02687	0.77	+0.3
2,845,456	+		EFB2_02687	0.77	+0.8
2,845,456	+		EFB2_02687	0.77	-0.7
2,845,512	+		EFB2_02687	0.82	-1.9
2,845,568	+		EFB2_02687	0.87	-0.9
2,845,569	-		EFB2_02687	0.87	-2.3
2,845,569	-		EFB2_02687	0.87	+1.1
2,845,569	-		EFB2_02687	0.87	+0.2
2,845,569	-		EFB2_02687	0.87	-0.8
2,845,569	-		EFB2_02687	0.87	+1.3
2,845,582	+		EFB2_02687	0.88	+2.1
2,845,654	+				-1.6
2,845,655	-				-0.2
2,845,655	-				+0.9
2,845,655	-				+0.1
2,845,655	-				+0.1
2,845,655	-				+1.2
2,845,655	-				+1.4
2,845,668	+				+0.1
2,845,668	+				+0.9
2,845,668	+				+2.8
2,845,668	+				+3.9
2,845,668	+				+0.4
2,845,668	+				+0.7
2,845,668	+				-1.3
2,845,668	+				-1.8
2,845,668	+				-1.3
2,845,668	+				-1.1
2,845,668	+				-0.1
2,845,668	+				-0.6
2,845,669	-				-1.6
2,845,669	-				-0.3
2,845,669	-				+2.5
2,845,669	-				+0.2
2,845,669	-				+0.5
2,845,669	-				-0.6
2,845,669	-				+0.3
2,845,669	-				+2.6
2,845,669	-				+0.9
2,845,669	-				+0.1
2,845,669	-				-1.9
2,845,669	-				-2.1
2,845,669	-				-0.0
2,845,669	-				-1.3
2,845,669	-				-1.3
2,845,669	-				+0.6
2,845,669	-				-2.5
2,845,669	-				-0.4
2,845,669	-				+0.1
2,845,669	-				-1.2
2,845,669	-				-1.7
2,845,669	-				-2.4
2,845,669	-				+1.3
2,845,671	-				-1.6
2,845,671	-				-0.7
2,845,678	-				-1.0
2,845,678	-				-0.1
2,845,678	-				+0.2
2,845,678	-				+1.2
2,845,678	-				+1.0
2,845,689	+				-0.2
2,845,690	-				-3.6
2,845,694	+				+1.6
2,845,694	+				+0.4
2,845,695	-				+1.7
2,845,695	-				-0.3
2,845,695	-				+0.1
2,845,699	+				+2.7
2,845,706	+				+1.4
2,845,706	+				-0.4
2,845,707	-				-2.6
2,845,724	+				+0.9
2,845,724	+				-1.9
2,845,724	+				-1.4
2,845,724	+				+0.6
2,845,724	+				-1.4
2,845,724	+				+1.8
2,845,724	+				-0.1
2,845,725	-				-1.0
2,845,725	-				+1.2
2,845,725	-				+2.8
2,845,725	-				-0.5
2,845,725	-				-1.4
2,845,725	-				+1.1
2,845,725	-				+1.2
2,845,725	-				+1.7
2,845,725	-				+1.2
2,845,725	-				+0.1
2,845,726	+				+0.1
2,845,727	-				-1.6
2,845,727	-				-1.0
2,845,727	-				-0.6
2,845,727	-				-0.7
2,845,744	+				-1.3
2,845,744	+				-0.1
2,845,745	-				-2.5
2,845,745	-				+0.3
2,845,745	-				-0.2
2,845,745	-				-0.2
2,845,745	-				-0.6
2,845,777	+				-0.4
2,845,777	+				+0.5
2,845,777	+				+0.9
2,845,777	+				+1.4
2,845,777	+				+0.3
2,845,777	+				-0.6
2,845,777	+				+1.2
2,845,777	+				-0.9
2,845,777	+				-0.1
2,845,777	+				+1.3
2,845,778	-				+0.8
2,845,778	-				-0.2
2,845,778	-				+0.7
2,845,778	-				+0.8
2,845,778	-				+0.4
2,845,778	-				-0.8
2,845,778	-				+1.1
2,845,778	-				+2.0
2,845,778	-				-1.6
2,845,779	+				-1.1
2,845,779	+				+0.9
2,845,780	-				+0.2
2,845,780	-				-2.1
2,845,780	-				+0.7
2,845,816	-				+0.9
2,845,816	-				+2.1
2,845,816	-				+1.4
2,845,842	-				+1.0
2,845,854	-				+0.6
2,845,857	-				-2.0
2,845,903	+				-0.1
2,845,915	-				+0.4
2,845,915	-				+1.5
2,845,915	-				-1.9
2,845,915	-				-1.3
2,845,916	+				+2.4
2,845,916	+				+0.4
2,845,917	-		EFB2_02688	0.10	+0.4
2,845,931	-		EFB2_02688	0.12	-0.0
2,845,951	-		EFB2_02688	0.16	+1.1
2,845,980	+		EFB2_02688	0.20	+1.4
2,845,980	+		EFB2_02688	0.20	-1.3
2,845,981	-		EFB2_02688	0.20	+1.3
2,845,981	-		EFB2_02688	0.20	-2.5
2,845,981	-		EFB2_02688	0.20	-0.5
2,845,981	-		EFB2_02688	0.20	-3.0
2,845,981	-		EFB2_02688	0.20	+1.0
2,845,981	-		EFB2_02688	0.20	+1.7
2,845,982	+		EFB2_02688	0.21	+1.4
2,845,982	+		EFB2_02688	0.21	+3.3
2,845,982	+		EFB2_02688	0.21	-0.1
2,845,982	+		EFB2_02688	0.21	-0.4
2,845,982	+		EFB2_02688	0.21	-0.5
2,845,983	-		EFB2_02688	0.21	-0.2
2,845,983	-		EFB2_02688	0.21	-1.1
2,845,983	-		EFB2_02688	0.21	+0.6
2,845,983	-		EFB2_02688	0.21	+1.9
2,845,983	-		EFB2_02688	0.21	-1.5
2,845,983	-		EFB2_02688	0.21	-1.9
2,846,026	-		EFB2_02688	0.28	-0.4
2,846,026	-		EFB2_02688	0.28	+0.9
2,846,081	-		EFB2_02688	0.37	+0.6
2,846,081	-		EFB2_02688	0.37	+1.3
2,846,084	+		EFB2_02688	0.37	+1.4
2,846,084	+		EFB2_02688	0.37	-2.1
2,846,085	-		EFB2_02688	0.37	+2.0
2,846,085	-		EFB2_02688	0.37	-0.0
2,846,085	-		EFB2_02688	0.37	+1.0
2,846,085	-		EFB2_02688	0.37	-0.9
2,846,085	-		EFB2_02688	0.37	-2.9
2,846,085	-		EFB2_02688	0.37	+2.4
2,846,102	-		EFB2_02688	0.40	-1.0
2,846,102	-		EFB2_02688	0.40	-1.1
2,846,122	-		EFB2_02688	0.43	-0.0
2,846,125	+		EFB2_02688	0.44	-1.7
2,846,126	-		EFB2_02688	0.44	+2.1
2,846,147	-		EFB2_02688	0.47	+0.9
2,846,180	+		EFB2_02688	0.53	+1.9
2,846,180	+		EFB2_02688	0.53	-1.6
2,846,181	-		EFB2_02688	0.53	+0.7
2,846,181	-		EFB2_02688	0.53	-2.5
2,846,182	+		EFB2_02688	0.53	+1.0
2,846,182	+		EFB2_02688	0.53	+0.3
2,846,182	+		EFB2_02688	0.53	+1.0
2,846,183	-		EFB2_02688	0.53	-0.3
2,846,183	-		EFB2_02688	0.53	-2.0
2,846,183	-		EFB2_02688	0.53	-2.4
2,846,183	-		EFB2_02688	0.53	-2.5
2,846,183	-		EFB2_02688	0.53	-0.4
2,846,183	-		EFB2_02688	0.53	-0.6
2,846,183	-		EFB2_02688	0.53	-0.9
2,846,183	-		EFB2_02688	0.53	+0.6
2,846,183	-		EFB2_02688	0.53	+0.1
2,846,183	-		EFB2_02688	0.53	+1.2
2,846,183	-		EFB2_02688	0.53	-0.3
2,846,222	-		EFB2_02688	0.59	+1.7
2,846,270	-		EFB2_02688	0.67	+2.4
2,846,287	-		EFB2_02688	0.70	-2.4
2,846,315	-		EFB2_02688	0.74	+2.2
2,846,315	-		EFB2_02688	0.74	+0.1
2,846,315	-		EFB2_02688	0.74	+1.8
2,846,315	-		EFB2_02688	0.74	-1.0
2,846,317	-		EFB2_02688	0.75	-0.3
2,846,364	+		EFB2_02688	0.82	-1.1
2,846,365	-		EFB2_02688	0.83	+0.1
2,846,366	+		EFB2_02688	0.83	+1.0
2,846,366	+		EFB2_02688	0.83	+1.4
2,846,366	+		EFB2_02688	0.83	+1.2
2,846,366	+		EFB2_02688	0.83	-1.4
2,846,367	-		EFB2_02688	0.83	+2.8
2,846,367	-		EFB2_02688	0.83	-0.7
2,846,367	-		EFB2_02688	0.83	-1.0
2,846,367	-		EFB2_02688	0.83	-0.0
2,846,367	-		EFB2_02688	0.83	-2.7
2,846,367	-		EFB2_02688	0.83	-0.9
2,846,368	+		EFB2_02688	0.83	-1.5
2,846,369	-		EFB2_02688	0.83	-2.6
2,846,369	-		EFB2_02688	0.83	+0.7
2,846,369	-		EFB2_02688	0.83	-0.7
2,846,369	-		EFB2_02688	0.83	+2.1
2,846,369	-		EFB2_02688	0.83	-0.1
2,846,369	-		EFB2_02688	0.83	-1.3
2,846,369	-		EFB2_02688	0.83	+0.8
2,846,369	-		EFB2_02688	0.83	-1.9
2,846,369	-		EFB2_02688	0.83	+2.6
2,846,369	-		EFB2_02688	0.83	-0.2
2,846,369	-		EFB2_02688	0.83	+1.4
2,846,402	+		EFB2_02688	0.89	-1.3
2,846,425	-				-1.2
2,846,431	-				+1.2
2,846,450	+				+1.0
2,846,454	-				+1.2
2,846,454	-				-0.9
2,846,459	+				-1.0
2,846,459	+				+0.4
2,846,459	+				-0.7
2,846,460	-				-3.4
2,846,460	-				-0.2
2,846,460	-				+4.4
2,846,460	-				-2.3
2,846,460	-				-2.8
2,846,460	-				+2.0
2,846,461	+				-0.1
2,846,461	+				+0.7
2,846,462	-				+0.3
2,846,462	-				-1.1
2,846,493	+				-1.3
2,846,494	-				+1.2
2,846,500	+				+0.9
2,846,501	-				+0.6
2,846,523	-				-1.0
2,846,549	+				-1.9
2,846,549	+				-1.1
2,846,549	+				+2.2
2,846,550	-				-0.4
2,846,550	-				+0.0
2,846,550	-				+2.1
2,846,550	-				+0.6
2,846,564	+				+2.2
2,846,564	+				-1.4
2,846,565	-				-0.4
2,846,565	-				-0.4
2,846,565	-				-1.9
2,846,565	-				-1.3
2,846,565	-				-2.3
2,846,565	-				+1.1
2,846,565	-				+0.7
2,846,565	-				+0.2
2,846,566	+				+1.0
2,846,566	+				-2.1
2,846,566	+				-0.8
2,846,566	+				+1.1
2,846,566	+				+0.4
2,846,566	+				+4.0
2,846,567	-				+2.6
2,846,567	-				+1.1
2,846,567	-				+1.4
2,846,567	-				-0.0
2,846,567	-				+1.4
2,846,567	-				-0.6
2,846,567	-				+1.3
2,846,581	-				-0.4
2,846,594	+				-1.0
2,846,594	+				-1.0
2,846,595	-				+0.1
2,846,595	-				+0.1
2,846,608	+				+1.0
2,846,608	+				+1.4
2,846,609	-				-1.7
2,846,614	+				-0.9
2,846,614	+				+2.2
2,846,614	+				-2.5
2,846,614	+				-2.1
2,846,614	+				+3.0
2,846,615	-				-3.5
2,846,615	-				-1.8
2,846,615	-				+1.7
2,846,615	-				+1.9
2,846,615	-				+1.0
2,846,615	-				+4.6
2,846,615	-				-1.5
2,846,632	+				+1.0
2,846,633	-				-1.2
2,846,633	-				+4.0
2,846,633	-				+0.9
2,846,634	+				+1.8
2,846,634	+				-0.4
2,846,635	-				+1.9
2,846,635	-				-0.6
2,846,635	-				+0.2
2,846,635	-				+1.9
2,846,635	-				-0.7
2,846,642	+				+2.9
2,846,642	+				-0.6
2,846,661	-				-1.6
2,846,689	+				-1.8
2,846,689	+				+1.0
2,846,689	+				+0.4
2,846,689	+				-1.5
2,846,689	+				-1.0
2,846,689	+				+0.1
2,846,689	+				-0.4
2,846,689	+				-1.7
2,846,689	+				-1.4
2,846,689	+				-1.5
2,846,690	-				+0.1
2,846,690	-				-1.1
2,846,690	-				-1.3
2,846,690	-				-0.9
2,846,690	-				+3.2
2,846,690	-				-1.1
2,846,690	-				-0.1
2,846,690	-				+1.1
2,846,690	-				-2.3
2,846,690	-				-2.6
2,846,690	-				-2.0
2,846,690	-				-1.0
2,846,690	-				+0.6
2,846,690	-				+0.0
2,846,693	-				+0.8
2,846,693	-				-1.8
2,846,693	-				-1.0
2,846,693	-				+0.1
2,846,717	+				-0.7
2,846,718	-				-1.6
2,846,725	+				+1.9
2,846,725	+				-0.6
2,846,725	+				-0.3
2,846,725	+				-1.2
2,846,725	+				+0.7
2,846,725	+				-0.6
2,846,725	+				+1.1
2,846,726	-				-2.4
2,846,726	-				+0.4
2,846,728	+				+1.2
2,846,728	+				+0.2
2,846,729	-				-0.3
2,846,729	-				+1.1
2,846,729	-				+0.6
2,846,756	+				+0.0
2,846,757	-				-0.3
2,846,801	-				-1.0
2,846,801	-				+1.6
2,846,801	-				+1.4
2,846,804	-				-3.1
2,846,829	+				-1.3
2,846,835	+				+1.1
2,846,836	-				-2.7
2,846,836	-				+1.6
2,846,836	-				-0.8
2,846,905	+				-0.2
2,846,911	+				+0.4
2,846,911	+				+0.3
2,846,912	-				+0.5
2,846,912	-				+0.9
2,846,912	-				-0.0
2,846,912	-				+0.3
2,846,912	-				+0.3
2,846,914	-				-2.1
2,847,366	+		EFB2_02689	0.70	-1.6
2,847,366	+		EFB2_02689	0.70	-0.1
2,847,370	+		EFB2_02689	0.71	-1.9
2,847,370	+		EFB2_02689	0.71	+0.4
2,847,370	+		EFB2_02689	0.71	-1.4
2,847,370	+		EFB2_02689	0.71	-2.0
2,847,370	+		EFB2_02689	0.71	-1.1
2,847,370	+		EFB2_02689	0.71	+0.1
2,847,370	+		EFB2_02689	0.71	-1.8
2,847,370	+		EFB2_02689	0.71	+0.3
2,847,417	+		EFB2_02689	0.82	+0.1
2,847,456	+				-0.1
2,847,456	+				+0.9