Strain Fitness in Escherichia fergusonii Becca around EFB2_02441

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,581,477	+				-0.4
2,581,477	+				-0.4
2,581,477	+				+0.3
2,581,478	-				+1.1
2,581,478	-				-2.5
2,581,478	-				-0.9
2,581,478	-				-0.3
2,581,478	-				-1.3
2,581,484	+				+0.2
2,581,488	+				+2.1
2,581,488	+				+1.4
2,581,488	+				+1.1
2,581,488	+				-0.9
2,581,488	+				-0.4
2,581,488	+				+1.6
2,581,488	+				-0.8
2,581,488	+				+0.2
2,581,489	-				+1.0
2,581,489	-				-1.1
2,581,489	-				-0.9
2,581,489	-				+2.6
2,581,489	-				-1.5
2,581,489	-				-0.6
2,581,489	-				+1.6
2,581,489	-				-0.6
2,581,549	+				-0.8
2,581,612	+				+1.3
2,581,613	-				-1.9
2,581,613	-				-0.3
2,581,616	-				-0.1
2,581,636	+				-0.4
2,581,636	+				+1.6
2,581,636	+				-0.0
2,581,639	+				-2.2
2,581,640	-				+0.2
2,581,667	+		EFB2_02440	0.12	+0.2
2,581,686	+		EFB2_02440	0.14	-1.3
2,581,687	-		EFB2_02440	0.15	+1.8
2,581,687	-		EFB2_02440	0.15	-3.7
2,581,703	+		EFB2_02440	0.16	-1.3
2,581,704	-		EFB2_02440	0.16	+1.5
2,581,704	-		EFB2_02440	0.16	+0.6
2,581,770	-		EFB2_02440	0.24	+0.7
2,581,852	+		EFB2_02440	0.33	-1.0
2,581,882	+		EFB2_02440	0.36	-0.0
2,581,882	+		EFB2_02440	0.36	+0.2
2,581,882	+		EFB2_02440	0.36	+0.5
2,581,882	+		EFB2_02440	0.36	+1.3
2,581,883	-		EFB2_02440	0.36	+1.0
2,581,883	-		EFB2_02440	0.36	-1.8
2,581,924	+		EFB2_02440	0.40	-0.8
2,581,925	-		EFB2_02440	0.41	+1.4
2,581,937	-		EFB2_02440	0.42	+0.4
2,581,971	+		EFB2_02440	0.46	-0.9
2,581,972	-		EFB2_02440	0.46	+2.1
2,582,026	+		EFB2_02440	0.52	+2.3
2,582,027	+		EFB2_02440	0.52	+1.3
2,582,027	+		EFB2_02440	0.52	-1.6
2,582,027	+		EFB2_02440	0.52	-1.6
2,582,028	-		EFB2_02440	0.52	-0.4
2,582,028	-		EFB2_02440	0.52	+0.5
2,582,035	+		EFB2_02440	0.53	+2.6
2,582,039	-		EFB2_02440	0.53	-1.6
2,582,087	+		EFB2_02440	0.58	+1.0
2,582,087	+		EFB2_02440	0.58	-0.8
2,582,097	-		EFB2_02440	0.59	+1.2
2,582,117	+		EFB2_02440	0.62	-0.6
2,582,123	+		EFB2_02440	0.62	-1.3
2,582,181	+		EFB2_02440	0.69	+1.6
2,582,181	+		EFB2_02440	0.69	+1.0
2,582,182	-		EFB2_02440	0.69	+0.6
2,582,182	-		EFB2_02440	0.69	-0.4
2,582,182	-		EFB2_02440	0.69	+1.0
2,582,202	-		EFB2_02440	0.71	-0.4
2,582,219	+		EFB2_02440	0.73	+1.3
2,582,219	+		EFB2_02440	0.73	+2.6
2,582,256	+		EFB2_02440	0.77	-0.5
2,582,257	-		EFB2_02440	0.77	-1.0
2,582,257	-		EFB2_02440	0.77	+1.6
2,582,257	-		EFB2_02440	0.77	+1.4
2,582,270	+		EFB2_02440	0.78	-2.6
2,582,270	+		EFB2_02440	0.78	+2.6
2,582,271	-		EFB2_02440	0.78	-1.5
2,582,289	+		EFB2_02440	0.80	-0.1
2,582,401	+				+1.7
2,582,401	+				+1.6
2,582,469	+				+0.2
2,582,470	-				-1.9
2,582,470	-				-0.9
2,582,470	-				+0.8
2,582,473	+				-0.4
2,582,473	+				-1.5
2,582,474	-				-1.0
2,582,474	-				-2.5
2,582,495	+				-0.4
2,582,495	+				+0.9
2,582,496	-				-1.5
2,582,520	+				-0.3
2,582,520	+				-0.0
2,582,520	+				+0.7
2,582,521	-				+1.6
2,582,521	-				+0.9
2,582,521	-				-1.3
2,582,546	-				+0.2
2,582,625	+		EFB2_02441	0.20	-0.3
2,582,625	+		EFB2_02441	0.20	+3.1
2,582,626	-		EFB2_02441	0.20	-2.4
2,582,626	-		EFB2_02441	0.20	-1.8
2,582,680	+		EFB2_02441	0.27	+2.6
2,582,681	-		EFB2_02441	0.28	+2.6
2,582,681	-		EFB2_02441	0.28	+0.2
2,582,681	-		EFB2_02441	0.28	-0.4
2,582,681	-		EFB2_02441	0.28	+0.1
2,582,682	+		EFB2_02441	0.28	-1.5
2,582,683	+		EFB2_02441	0.28	+1.6
2,582,683	+		EFB2_02441	0.28	-1.1
2,582,683	+		EFB2_02441	0.28	-1.1
2,582,683	+		EFB2_02441	0.28	+0.2
2,582,683	+		EFB2_02441	0.28	-3.0
2,582,683	+		EFB2_02441	0.28	-1.3
2,582,683	+		EFB2_02441	0.28	+2.4
2,582,683	+		EFB2_02441	0.28	-1.8
2,582,683	+		EFB2_02441	0.28	-0.4
2,582,683	+		EFB2_02441	0.28	-0.0
2,582,683	+		EFB2_02441	0.28	-0.3
2,582,683	+		EFB2_02441	0.28	+1.9
2,582,684	-		EFB2_02441	0.28	-0.5
2,582,684	-		EFB2_02441	0.28	-0.3
2,582,684	-		EFB2_02441	0.28	-0.9
2,582,684	-		EFB2_02441	0.28	-2.2
2,582,684	-		EFB2_02441	0.28	-2.3
2,582,684	-		EFB2_02441	0.28	+0.6
2,582,684	-		EFB2_02441	0.28	+3.6
2,582,684	-		EFB2_02441	0.28	+0.4
2,582,684	-		EFB2_02441	0.28	+1.0
2,582,729	+		EFB2_02441	0.34	+0.2
2,582,734	+		EFB2_02441	0.35	+1.0
2,582,735	-		EFB2_02441	0.35	+0.6
2,582,735	-		EFB2_02441	0.35	+0.7
2,582,737	+		EFB2_02441	0.35	+0.2
2,582,737	+		EFB2_02441	0.35	-0.6
2,582,737	+		EFB2_02441	0.35	+1.6
2,582,737	+		EFB2_02441	0.35	-0.9
2,582,738	-		EFB2_02441	0.35	+0.3
2,582,738	-		EFB2_02441	0.35	+1.1
2,582,779	+		EFB2_02441	0.40	-1.4
2,582,779	+		EFB2_02441	0.40	+0.2
2,582,834	+		EFB2_02441	0.48	-1.4
2,582,834	+		EFB2_02441	0.48	-0.4
2,582,834	+		EFB2_02441	0.48	-1.4
2,582,835	-		EFB2_02441	0.48	-0.4
2,582,835	-		EFB2_02441	0.48	-0.5
2,582,835	-		EFB2_02441	0.48	-0.1
2,582,835	-		EFB2_02441	0.48	+1.3
2,582,835	-		EFB2_02441	0.48	-1.9
2,582,847	+		EFB2_02441	0.49	-0.8
2,582,847	+		EFB2_02441	0.49	-0.3
2,582,847	+		EFB2_02441	0.49	+0.6
2,582,848	-		EFB2_02441	0.50	+2.4
2,582,933	+		EFB2_02441	0.61	-0.9
2,583,084	+		EFB2_02441	0.81	-1.3
2,583,102	-		EFB2_02441	0.83	-0.0
2,583,130	+		EFB2_02441	0.87	+1.7
2,583,201	+				-1.7
2,583,201	+				-0.3
2,583,201	+				+0.6
2,583,202	-				-0.3
2,583,202	-				-0.2
2,583,202	-				-0.8
2,583,202	-				-0.0
2,583,205	+				+1.0
2,583,206	-				+0.6
2,583,206	-				+1.0
2,583,207	+				-0.4
2,583,207	+				+1.4
2,583,207	+				-0.3
2,583,207	+				+1.9
2,583,207	+				-1.6
2,583,207	+				-1.4
2,583,208	-				-2.1
2,583,208	-				-1.4
2,583,208	-				+2.6
2,583,208	-				-1.3
2,583,208	-				+1.5
2,583,208	-				+0.1
2,583,264	+				+3.9
2,583,265	-				-1.5
2,583,268	+				+0.2
2,583,269	-				-2.1
2,583,278	-				+1.6
2,583,335	+				-1.0
2,583,336	-				+1.1
2,583,375	-				-0.6
2,583,481	-				-1.6
2,583,488	-				+0.2
2,583,499	+				+0.3
2,583,532	+				+0.4
2,583,532	+				+0.2
2,583,532	+				+3.0
2,583,810	-				-0.0
2,583,814	+				-0.4
2,583,814	+				-0.1
2,583,814	+				-1.8
2,583,881	+				-0.1
2,583,881	+				+1.4
2,583,881	+				-1.8
2,583,881	+				-0.0
2,583,882	-				-0.6
2,583,882	-				-0.3
2,583,882	-				-0.5
2,583,882	-				-0.3
2,583,885	+				+0.6
2,583,885	+				+2.1
2,583,885	+				-2.0
2,583,885	+				+2.1
2,583,885	+				-2.0
2,583,885	+				+1.0
2,583,886	-				-0.3
2,583,886	-				-0.6
2,583,886	-				-1.1
2,583,913	-				+1.6
2,583,957	-		EFB2_02443	0.12	-1.4
2,583,957	-		EFB2_02443	0.12	-2.2
2,583,957	-		EFB2_02443	0.12	+1.3
2,583,974	-		EFB2_02443	0.13	+0.1
2,583,978	-		EFB2_02443	0.13	-0.6
2,583,978	-		EFB2_02443	0.13	-1.0
2,584,015	+		EFB2_02443	0.16	-3.3
2,584,015	+		EFB2_02443	0.16	-1.4
2,584,015	+		EFB2_02443	0.16	-0.0
2,584,016	-		EFB2_02443	0.16	+0.2
2,584,016	-		EFB2_02443	0.16	+1.6
2,584,016	-		EFB2_02443	0.16	-1.3
2,584,069	+		EFB2_02443	0.20	+1.1
2,584,112	-		EFB2_02443	0.23	+1.7
2,584,132	+		EFB2_02443	0.25	-0.3
2,584,133	-		EFB2_02443	0.25	-2.1
2,584,186	+		EFB2_02443	0.29	-0.4
2,584,186	+		EFB2_02443	0.29	+0.9
2,584,186	+		EFB2_02443	0.29	-1.3
2,584,186	+		EFB2_02443	0.29	-0.9
2,584,187	-		EFB2_02443	0.29	-1.0
2,584,197	+		EFB2_02443	0.30	+2.3
2,584,197	+		EFB2_02443	0.30	+1.2
2,584,198	-		EFB2_02443	0.30	+1.1
2,584,199	+		EFB2_02443	0.30	-1.4
2,584,199	+		EFB2_02443	0.30	+1.0
2,584,199	+		EFB2_02443	0.30	-0.8
2,584,199	+		EFB2_02443	0.30	-2.7
2,584,200	-		EFB2_02443	0.30	+0.6
2,584,200	-		EFB2_02443	0.30	+1.0
2,584,226	+		EFB2_02443	0.32	+0.1