Strain Fitness in Escherichia fergusonii Becca around EFB2_02437

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,576,777	+				+2.3
2,576,777	+				+2.3
2,576,777	+				-2.4
2,576,777	+				-1.0
2,576,777	+				+0.7
2,576,777	+				-1.4
2,576,777	+				+0.3
2,576,777	+				-1.0
2,576,777	+				+1.0
2,576,777	+				+0.9
2,576,777	+				-1.4
2,576,777	+				+0.5
2,576,777	+				-1.1
2,576,778	-				+0.5
2,576,778	-				-1.4
2,576,778	-				-1.5
2,576,778	-				-0.9
2,576,778	-				-2.3
2,576,778	-				-2.1
2,576,778	-				-0.8
2,576,778	-				-2.0
2,576,778	-				+2.0
2,576,779	+				-2.6
2,576,779	+				-0.3
2,576,779	+				-0.3
2,576,779	+				-2.1
2,576,779	+				-1.3
2,576,779	+				-0.3
2,576,779	+				+2.0
2,576,779	+				+1.0
2,576,779	+				-1.9
2,576,779	+				-1.4
2,576,779	+				+0.9
2,576,779	+				-0.3
2,576,779	+				-0.1
2,576,779	+				-1.8
2,576,779	+				+2.6
2,576,779	+				+2.1
2,576,779	+				-1.8
2,576,779	+				-0.0
2,576,779	+				-0.1
2,576,779	+				+0.4
2,576,780	-				+0.6
2,576,780	-				+0.2
2,576,780	-				-2.1
2,576,780	-				+0.7
2,576,780	-				+0.6
2,576,780	-				+0.0
2,576,780	-				+1.1
2,576,780	-				-1.4
2,576,780	-				+1.5
2,576,780	-				-0.8
2,576,780	-				-0.4
2,576,780	-				-1.8
2,576,780	-				+1.6
2,576,781	+				+0.2
2,576,781	+				+0.2
2,576,781	+				+1.8
2,576,781	+				-1.9
2,576,781	+				-1.7
2,576,781	+				+0.7
2,576,781	+				-3.2
2,576,781	+				-0.6
2,576,781	+				-1.0
2,576,781	+				-1.3
2,576,781	+				-0.4
2,576,781	+				-0.4
2,576,782	-				-1.5
2,576,782	-				-3.0
2,576,782	-				+1.9
2,576,782	-				-1.3
2,576,782	-				-0.3
2,576,782	-				+1.8
2,576,782	-				-0.8
2,576,782	-				+1.7
2,576,782	-				+3.9
2,576,794	+				+1.6
2,576,794	+				+3.3
2,576,794	+				-1.1
2,576,794	+				+0.7
2,576,794	+				+0.5
2,576,794	+				-1.1
2,576,796	+				-0.5
2,576,796	+				+2.1
2,576,796	+				+1.5
2,576,796	+				+1.0
2,576,797	-				+0.2
2,576,797	-				-1.8
2,576,832	-				-1.4
2,576,832	-				-2.0
2,576,832	-				-0.0
2,576,832	-				+2.6
2,576,921	+				-0.8
2,576,921	+				-1.4
2,576,921	+				-1.6
2,576,922	-				+0.5
2,576,923	+				-1.9
2,576,923	+				-1.8
2,576,923	+				-2.0
2,576,924	-				+0.0
2,576,938	+		EFB2_02436	0.11	+0.1
2,576,968	+		EFB2_02436	0.14	-0.4
2,576,968	+		EFB2_02436	0.14	+0.0
2,576,969	-		EFB2_02436	0.14	+0.4
2,576,974	+		EFB2_02436	0.15	-0.8
2,576,974	+		EFB2_02436	0.15	-1.8
2,577,034	+		EFB2_02436	0.21	-0.9
2,577,035	-		EFB2_02436	0.21	+0.7
2,577,035	-		EFB2_02436	0.21	+2.6
2,577,074	+		EFB2_02436	0.26	-0.4
2,577,075	-		EFB2_02436	0.26	-0.4
2,577,172	+		EFB2_02436	0.36	+1.2
2,577,172	+		EFB2_02436	0.36	+2.0
2,577,182	-		EFB2_02436	0.37	+1.6
2,577,184	+		EFB2_02436	0.37	+1.9
2,577,211	+		EFB2_02436	0.40	-0.2
2,577,211	+		EFB2_02436	0.40	+0.2
2,577,212	-		EFB2_02436	0.40	-1.8
2,577,247	+		EFB2_02436	0.44	+0.8
2,577,247	+		EFB2_02436	0.44	+0.4
2,577,247	+		EFB2_02436	0.44	-0.1
2,577,247	+		EFB2_02436	0.44	-2.0
2,577,247	+		EFB2_02436	0.44	+0.6
2,577,247	+		EFB2_02436	0.44	-1.5
2,577,247	+		EFB2_02436	0.44	-2.3
2,577,247	+		EFB2_02436	0.44	-0.8
2,577,247	+		EFB2_02436	0.44	-0.0
2,577,247	+		EFB2_02436	0.44	-0.6
2,577,247	+		EFB2_02436	0.44	-2.6
2,577,247	+		EFB2_02436	0.44	-1.4
2,577,247	+		EFB2_02436	0.44	-0.5
2,577,248	-		EFB2_02436	0.44	-1.0
2,577,248	-		EFB2_02436	0.44	-0.6
2,577,248	-		EFB2_02436	0.44	-1.6
2,577,248	-		EFB2_02436	0.44	+2.2
2,577,248	-		EFB2_02436	0.44	+0.3
2,577,248	-		EFB2_02436	0.44	-1.5
2,577,248	-		EFB2_02436	0.44	-0.0
2,577,248	-		EFB2_02436	0.44	+0.0
2,577,248	-		EFB2_02436	0.44	+0.0
2,577,248	-		EFB2_02436	0.44	-0.6
2,577,270	+		EFB2_02436	0.47	-0.9
2,577,270	+		EFB2_02436	0.47	-1.7
2,577,270	+		EFB2_02436	0.47	+0.7
2,577,270	+		EFB2_02436	0.47	-2.8
2,577,270	+		EFB2_02436	0.47	+0.6
2,577,271	-		EFB2_02436	0.47	+0.2
2,577,271	-		EFB2_02436	0.47	+1.2
2,577,271	-		EFB2_02436	0.47	+1.6
2,577,271	-		EFB2_02436	0.47	-0.8
2,577,286	+		EFB2_02436	0.48	+0.5
2,577,287	-		EFB2_02436	0.49	+1.6
2,577,293	+		EFB2_02436	0.49	+0.9
2,577,294	-		EFB2_02436	0.49	+0.1
2,577,410	+		EFB2_02436	0.62	+1.3
2,577,410	+		EFB2_02436	0.62	+0.5
2,577,420	-		EFB2_02436	0.63	-1.1
2,577,444	+		EFB2_02436	0.65	+1.4
2,577,444	+		EFB2_02436	0.65	-0.8
2,577,444	+		EFB2_02436	0.65	+1.6
2,577,490	+		EFB2_02436	0.70	+1.6
2,577,490	+		EFB2_02436	0.70	+1.0
2,577,490	+		EFB2_02436	0.70	-0.6
2,577,490	+		EFB2_02436	0.70	+1.0
2,577,490	+		EFB2_02436	0.70	-0.3
2,577,490	+		EFB2_02436	0.70	+0.5
2,577,490	+		EFB2_02436	0.70	-1.5
2,577,490	+		EFB2_02436	0.70	-0.2
2,577,490	+		EFB2_02436	0.70	+0.8
2,577,490	+		EFB2_02436	0.70	+1.5
2,577,490	+		EFB2_02436	0.70	-1.8
2,577,490	+		EFB2_02436	0.70	-1.6
2,577,491	-		EFB2_02436	0.71	+1.3
2,577,491	-		EFB2_02436	0.71	-0.0
2,577,491	-		EFB2_02436	0.71	+0.6
2,577,491	-		EFB2_02436	0.71	+0.2
2,577,497	-		EFB2_02436	0.71	-0.6
2,577,562	+		EFB2_02436	0.78	-0.9
2,577,562	+		EFB2_02436	0.78	-0.0
2,577,562	+		EFB2_02436	0.78	+1.9
2,577,566	+		EFB2_02436	0.79	+0.7
2,577,566	+		EFB2_02436	0.79	-0.6
2,577,567	-		EFB2_02436	0.79	-0.4
2,577,567	-		EFB2_02436	0.79	-1.0
2,577,567	-		EFB2_02436	0.79	+0.0
2,577,567	-		EFB2_02436	0.79	+2.4
2,577,567	-		EFB2_02436	0.79	-0.1
2,577,567	-		EFB2_02436	0.79	+0.7
2,577,761	+				-0.1
2,577,795	-				+0.8
2,577,847	+		EFB2_02437	0.23	-0.3
2,577,847	+		EFB2_02437	0.23	+0.2
2,577,847	+		EFB2_02437	0.23	+2.0
2,577,848	-		EFB2_02437	0.24	-0.9
2,577,940	-		EFB2_02437	0.49	+0.8
2,577,972	+		EFB2_02437	0.58	-1.4
2,578,017	+		EFB2_02437	0.71	-0.9
2,578,026	+		EFB2_02437	0.73	-2.3
2,578,026	+		EFB2_02437	0.73	+0.7
2,578,026	+		EFB2_02437	0.73	+1.1
2,578,049	+		EFB2_02437	0.79	+1.8
2,578,049	+		EFB2_02437	0.79	-1.8
2,578,050	-		EFB2_02437	0.80	-1.4
2,578,050	-		EFB2_02437	0.80	-0.8
2,578,050	-		EFB2_02437	0.80	+1.4
2,578,050	-		EFB2_02437	0.80	-0.0
2,578,050	-		EFB2_02437	0.80	-1.3
2,578,069	+		EFB2_02437	0.85	+2.6
2,578,069	+		EFB2_02437	0.85	+0.4
2,578,069	+		EFB2_02437	0.85	-3.1
2,578,069	+		EFB2_02437	0.85	-0.4
2,578,069	+		EFB2_02437	0.85	-0.4
2,578,069	+		EFB2_02437	0.85	-0.8
2,578,069	+		EFB2_02437	0.85	+2.3
2,578,069	+		EFB2_02437	0.85	-1.5
2,578,069	+		EFB2_02437	0.85	+1.1
2,578,070	-		EFB2_02437	0.85	+1.6
2,578,070	-		EFB2_02437	0.85	+1.0
2,578,070	-		EFB2_02437	0.85	-1.4
2,578,070	-		EFB2_02437	0.85	+1.6
2,578,070	-		EFB2_02437	0.85	-2.0
2,578,071	+		EFB2_02437	0.86	-0.1
2,578,071	+		EFB2_02437	0.86	+1.1
2,578,071	+		EFB2_02437	0.86	+4.4
2,578,071	+		EFB2_02437	0.86	+0.6
2,578,071	+		EFB2_02437	0.86	-2.8
2,578,071	+		EFB2_02437	0.86	+1.5
2,578,071	+		EFB2_02437	0.86	-1.7
2,578,071	+		EFB2_02437	0.86	-0.6
2,578,071	+		EFB2_02437	0.86	-1.6
2,578,071	+		EFB2_02437	0.86	-0.9
2,578,072	-		EFB2_02437	0.86	-1.0
2,578,072	-		EFB2_02437	0.86	-0.4
2,578,072	-		EFB2_02437	0.86	-2.9
2,578,072	-		EFB2_02437	0.86	+0.7
2,578,087	+				-0.9
2,578,087	+				+0.6
2,578,088	-				-2.7
2,578,103	+				-0.9
2,578,104	-				-1.0
2,578,104	-				-0.8
2,578,104	-				-0.9
2,578,123	+				+0.9
2,578,123	+				-0.0
2,578,123	+				-0.5
2,578,123	+				-0.3
2,578,123	+				+0.7
2,578,124	-				+0.2
2,578,124	-				+2.9
2,578,124	-				-2.5
2,578,124	-				-1.4
2,578,154	+				+0.2
2,578,154	+				+1.8
2,578,154	+				-0.0
2,578,154	+				-1.1
2,578,154	+				+2.9
2,578,154	+				+2.6
2,578,154	+				-2.7
2,578,154	+				-0.0
2,578,154	+				+0.6
2,578,155	-				-1.0
2,578,155	-				-0.3
2,578,155	-				+1.0
2,578,155	-				-2.3
2,578,155	-				-0.0
2,578,155	-				-0.3
2,578,155	-				-1.3
2,578,158	+				+1.0
2,578,158	+				-0.0
2,578,159	-				+1.3
2,578,164	+				-1.1
2,578,164	+				+1.6
2,578,164	+				-1.1
2,578,164	+				-0.8
2,578,164	+				-1.1
2,578,164	+				+1.0
2,578,164	+				+3.4
2,578,165	-				-0.3
2,578,165	-				+0.6
2,578,165	-				+0.5
2,578,165	-				-1.1
2,578,165	-				-0.9
2,578,165	-				-2.1
2,578,192	+				+1.5
2,578,192	+				-1.8
2,578,209	+				+0.2
2,578,209	+				+1.6
2,578,213	+				-0.3
2,578,226	+				+0.8
2,578,227	-				+0.6
2,578,227	-				-1.9
2,578,227	-				+2.5
2,578,255	+				-0.0
2,578,255	+				-2.1
2,578,255	+				-1.8
2,578,256	-				-0.9
2,578,256	-				+0.3
2,578,256	-				-1.4
2,578,256	-				-1.8
2,578,256	-				-1.1
2,578,256	-				-0.6
2,578,256	-				-2.7
2,578,256	-				-1.4
2,578,259	+				-0.6
2,578,259	+				+1.4
2,578,259	+				+0.6
2,578,259	+				-2.1
2,578,259	+				-1.5
2,578,260	-				-1.0
2,578,260	-				-1.4
2,578,268	+				-1.6
2,578,268	+				+1.7
2,578,268	+				+5.1
2,578,268	+				+2.3
2,578,268	+				-0.4
2,578,268	+				-0.8
2,578,268	+				-1.1
2,578,269	-				+1.0
2,578,269	-				+0.2
2,578,269	-				-0.9
2,578,269	-				+0.8
2,578,269	-				-1.1
2,578,314	-				+0.6
2,578,314	-				+0.4
2,578,317	+				-1.4
2,578,317	+				-0.8
2,578,317	+				+2.6
2,578,317	+				+1.0
2,578,317	+				-1.9
2,578,317	+				+2.1
2,578,318	-				-0.3
2,578,318	-				+1.8
2,578,318	-				-1.0
2,578,318	-				+0.6
2,578,318	-				-0.3
2,578,318	-				-0.9
2,578,318	-				+2.1
2,578,320	+				+3.3
2,578,320	+				-2.3
2,578,320	+				+0.2
2,578,320	+				+0.2
2,578,321	-				+1.3
2,578,321	-				+0.6
2,578,321	-				+0.1
2,578,321	-				+2.3
2,578,354	+				-0.3
2,578,354	+				-0.8
2,578,354	+				+0.6
2,578,354	+				-0.3
2,578,354	+				-1.8
2,578,355	-				-1.8
2,578,373	+				+0.1
2,578,373	+				+0.1
2,578,373	+				+0.5
2,578,374	-				+0.9
2,578,441	+		EFB2_02438	0.13	+0.1
2,578,452	+		EFB2_02438	0.13	+0.3
2,578,465	+		EFB2_02438	0.14	-2.5
2,578,465	+		EFB2_02438	0.14	-0.8
2,578,465	+		EFB2_02438	0.14	+0.6
2,578,465	+		EFB2_02438	0.14	-1.0
2,578,465	+		EFB2_02438	0.14	-0.3
2,578,465	+		EFB2_02438	0.14	+1.0
2,578,465	+		EFB2_02438	0.14	+1.6
2,578,465	+		EFB2_02438	0.14	+2.6
2,578,465	+		EFB2_02438	0.14	-0.8
2,578,465	+		EFB2_02438	0.14	-0.9
2,578,465	+		EFB2_02438	0.14	+0.7
2,578,465	+		EFB2_02438	0.14	+2.7
2,578,465	+		EFB2_02438	0.14	-1.6
2,578,465	+		EFB2_02438	0.14	+2.6
2,578,465	+		EFB2_02438	0.14	-1.4
2,578,465	+		EFB2_02438	0.14	+1.0
2,578,465	+		EFB2_02438	0.14	-1.1
2,578,466	-		EFB2_02438	0.14	+0.1
2,578,466	-		EFB2_02438	0.14	-0.9
2,578,466	-		EFB2_02438	0.14	-2.5
2,578,466	-		EFB2_02438	0.14	-1.6
2,578,466	-		EFB2_02438	0.14	-0.3
2,578,466	-		EFB2_02438	0.14	-0.9
2,578,468	+		EFB2_02438	0.15	-1.6
2,578,469	-		EFB2_02438	0.15	+1.7
2,578,469	-		EFB2_02438	0.15	-2.1
2,578,469	-		EFB2_02438	0.15	-0.3
2,578,480	+		EFB2_02438	0.15	+0.6
2,578,480	+		EFB2_02438	0.15	+0.6
2,578,480	+		EFB2_02438	0.15	+0.2
2,578,481	-		EFB2_02438	0.16	-1.8
2,578,481	-		EFB2_02438	0.16	+0.1
2,578,481	-		EFB2_02438	0.16	-0.0
2,578,481	-		EFB2_02438	0.16	-0.3
2,578,498	+		EFB2_02438	0.17	+0.1
2,578,498	+		EFB2_02438	0.17	+1.3
2,578,498	+		EFB2_02438	0.17	+1.6
2,578,499	-		EFB2_02438	0.17	+0.1
2,578,499	-		EFB2_02438	0.17	-1.4
2,578,540	-		EFB2_02438	0.20	+0.5
2,578,554	+		EFB2_02438	0.21	-0.4
2,578,554	+		EFB2_02438	0.21	-2.3
2,578,554	+		EFB2_02438	0.21	-0.3
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