Strain Fitness in Escherichia fergusonii Becca around EFB2_02411

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,550,151	+				+1.0
2,550,187	+		EFB2_02409	0.14	-2.0
2,550,187	+		EFB2_02409	0.14	+1.6
2,550,188	-		EFB2_02409	0.14	-1.6
2,550,188	-		EFB2_02409	0.14	+1.2
2,550,188	-		EFB2_02409	0.14	-1.7
2,550,202	-		EFB2_02409	0.18	+2.2
2,550,232	+		EFB2_02409	0.27	+1.7
2,550,263	-		EFB2_02409	0.36	+1.2
2,550,308	-		EFB2_02409	0.49	+1.4
2,550,481	+				+3.6
2,550,495	+				+1.0
2,550,495	+				+1.0
2,550,496	-				+1.6
2,550,496	-				-1.3
2,550,496	-				-0.9
2,550,496	-				-0.1
2,550,496	-				-1.4
2,550,496	-				-1.2
2,550,496	-				+0.9
2,550,496	-				+0.9
2,550,496	-				-2.3
2,550,496	-				-0.2
2,550,496	-				+1.7
2,550,496	-				-1.0
2,550,505	+				-1.6
2,550,505	+				-0.4
2,550,505	+				+1.1
2,550,505	+				+2.0
2,550,506	-				+1.3
2,550,506	-				-0.4
2,550,506	-				+0.8
2,550,517	+				-0.2
2,550,517	+				+0.9
2,550,517	+				+2.0
2,550,517	+				-1.5
2,550,518	-				-0.2
2,550,518	-				+1.0
2,550,518	-				+0.5
2,550,518	-				+0.6
2,550,518	-				+0.1
2,550,518	-				+0.9
2,550,518	-				+0.4
2,550,518	-				+1.0
2,550,518	-				-0.6
2,550,518	-				-0.6
2,550,518	-				+0.3
2,550,559	+				-1.9
2,550,559	+				+0.6
2,550,559	+				+1.9
2,550,559	+				+2.6
2,550,559	+				+0.8
2,550,559	+				+0.5
2,550,559	+				-1.0
2,550,559	+				-1.0
2,550,559	+				+1.6
2,550,559	+				-1.7
2,550,559	+				-1.7
2,550,559	+				+1.2
2,550,559	+				+0.5
2,550,559	+				+1.0
2,550,559	+				+2.6
2,550,559	+				+1.0
2,550,559	+				-1.7
2,550,560	-				+2.3
2,550,560	-				-0.9
2,550,560	-				-0.4
2,550,560	-				+0.6
2,550,560	-				+2.3
2,550,560	-				+0.2
2,550,560	-				+1.2
2,550,560	-				+0.6
2,550,561	+				+3.6
2,550,561	+				-2.1
2,550,561	+				-1.8
2,550,561	+				-0.2
2,550,561	+				+2.0
2,550,561	+				+0.4
2,550,562	-				+1.6
2,550,562	-				+0.7
2,550,562	-				+1.7
2,550,562	-				+0.3
2,550,562	-				-1.1
2,550,570	+				-1.9
2,550,570	+				+0.6
2,550,570	+				+0.1
2,550,570	+				+0.6
2,550,570	+				+1.8
2,550,570	+				-1.1
2,550,571	-				+1.0
2,550,571	-				+0.4
2,550,571	-				+2.5
2,550,571	-				-2.1
2,550,571	-				+0.1
2,550,571	-				-1.0
2,550,571	-				+1.7
2,550,571	-				+2.2
2,550,571	-				+0.8
2,550,571	-				-0.2
2,550,571	-				-0.0
2,550,573	+				+0.8
2,550,573	+				-0.0
2,550,573	+				+2.6
2,550,573	+				-1.0
2,550,573	+				-0.4
2,550,573	+				+0.3
2,550,573	+				-1.2
2,550,573	+				+2.6
2,550,573	+				-1.7
2,550,573	+				-2.1
2,550,573	+				-0.7
2,550,574	-				-1.4
2,550,574	-				-0.9
2,550,574	-				+1.7
2,550,574	-				-1.8
2,550,574	-				-0.6
2,550,574	-				-1.6
2,550,574	-				-2.4
2,550,574	-				+2.1
2,550,574	-				-0.2
2,550,574	-				-0.6
2,550,574	-				-2.0
2,550,574	-				+0.6
2,550,574	-				-0.0
2,550,574	-				+1.5
2,550,583	+				-1.7
2,550,583	+				-1.4
2,550,584	-				+0.1
2,550,584	-				-1.9
2,550,584	-				-2.8
2,550,585	+				-0.9
2,550,585	+				-2.2
2,550,585	+				+0.8
2,550,585	+				-0.0
2,550,585	+				+0.9
2,550,585	+				-2.6
2,550,585	+				+0.3
2,550,585	+				+1.7
2,550,585	+				+1.8
2,550,585	+				-1.0
2,550,585	+				-1.3
2,550,586	-				+1.3
2,550,586	-				-1.0
2,550,586	-				-2.4
2,550,586	-				+0.7
2,550,589	+				-0.9
2,550,589	+				-1.0
2,550,589	+				+0.3
2,550,589	+				-2.2
2,550,589	+				-2.1
2,550,589	+				+2.3
2,550,589	+				+0.9
2,550,589	+				+2.1
2,550,589	+				+0.1
2,550,589	+				+0.9
2,550,589	+				+0.1
2,550,589	+				+3.2
2,550,589	+				-0.8
2,550,589	+				-0.3
2,550,589	+				+2.6
2,550,589	+				+3.6
2,550,590	-				-0.6
2,550,590	-				+0.5
2,550,590	-				+2.3
2,550,590	-				-1.8
2,550,590	-				-0.6
2,550,590	-				+0.1
2,550,590	-				+1.2
2,550,590	-				-0.4
2,550,590	-				-0.5
2,550,590	-				+1.0
2,550,590	-				+0.2
2,550,590	-				-0.4
2,550,590	-				-1.1
2,550,590	-				-0.4
2,550,591	+				+3.9
2,550,591	+				+0.8
2,550,591	+				-2.1
2,550,591	+				+1.1
2,550,591	+				-1.1
2,550,591	+				+0.3
2,550,591	+				+1.0
2,550,591	+				+0.2
2,550,591	+				-2.6
2,550,591	+				+1.3
2,550,591	+				+1.6
2,550,591	+				-0.6
2,550,591	+				-1.1
2,550,591	+				-0.4
2,550,591	+				+0.2
2,550,591	+				-0.2
2,550,592	-				+0.4
2,550,592	-				+0.9
2,550,592	-				+2.6
2,550,592	-				+0.8
2,550,592	-				+1.6
2,550,592	-				+0.6
2,550,592	-				+0.9
2,550,592	-				+0.2
2,550,592	-				-2.2
2,550,592	-				-2.3
2,550,592	-				-0.8
2,550,592	-				-0.0
2,550,592	-				+1.0
2,550,604	+				+0.4
2,550,604	+				-0.5
2,550,604	+				-1.4
2,550,604	+				-0.0
2,550,605	-				-1.3
2,550,605	-				+1.0
2,550,605	-				+0.8
2,550,605	-				-1.3
2,550,605	-				+0.8
2,550,605	-				-2.3
2,550,621	+				-0.9
2,550,622	-				+1.6
2,550,622	-				-1.2
2,550,622	-				-0.8
2,550,632	+				-1.8
2,550,632	+				+1.0
2,550,632	+				+2.2
2,550,636	-				-1.1
2,550,646	-				-0.1
2,550,663	+		EFB2_02410	0.14	-0.6
2,550,708	+		EFB2_02410	0.28	+1.2
2,550,708	+		EFB2_02410	0.28	-2.2
2,550,709	-		EFB2_02410	0.28	-1.3
2,550,761	+		EFB2_02410	0.44	+2.8
2,550,802	+		EFB2_02410	0.57	+0.6
2,550,802	+		EFB2_02410	0.57	-0.5
2,550,802	+		EFB2_02410	0.57	-0.8
2,550,803	-		EFB2_02410	0.57	+0.6
2,550,803	-		EFB2_02410	0.57	+0.2
2,550,803	-		EFB2_02410	0.57	-2.2
2,550,814	+		EFB2_02410	0.61	-1.6
2,550,814	+		EFB2_02410	0.61	-1.2
2,550,814	+		EFB2_02410	0.61	-0.1
2,550,814	+		EFB2_02410	0.61	-1.1
2,550,815	-		EFB2_02410	0.61	+1.0
2,550,871	+		EFB2_02410	0.78	+0.8
2,550,871	+		EFB2_02410	0.78	-2.1
2,550,871	+		EFB2_02410	0.78	-0.8
2,550,890	+		EFB2_02410	0.84	+2.6
2,550,890	+		EFB2_02410	0.84	-0.0
2,550,998	-				-1.1
2,551,036	+				-0.1
2,551,037	-				+0.6
2,551,038	+				-0.0
2,551,039	-				-1.8
2,551,087	-				+2.0
2,551,159	-				+1.1
2,551,159	-				+1.2
2,551,178	-				+3.1
2,551,192	+				-0.5
2,551,206	+				+1.6
2,551,206	+				+2.3
2,551,228	+				-0.6
2,551,228	+				+1.2
2,551,229	-				+2.6
2,551,231	+				+2.8
2,551,254	+				-1.1
2,551,254	+				-0.2
2,551,254	+				-1.0
2,551,255	-				+0.1
2,551,255	-				-2.6
2,551,283	+		EFB2_02411	0.11	+2.1
2,551,283	+		EFB2_02411	0.11	-1.1
2,551,284	-		EFB2_02411	0.11	+1.1
2,551,284	-		EFB2_02411	0.11	-0.2
2,551,313	-		EFB2_02411	0.14	+0.9
2,551,337	+		EFB2_02411	0.16	+0.6
2,551,341	+		EFB2_02411	0.16	+2.2
2,551,342	+		EFB2_02411	0.16	-2.6
2,551,343	-		EFB2_02411	0.16	-0.0
2,551,343	-		EFB2_02411	0.16	+0.2
2,551,358	+		EFB2_02411	0.17	+0.0
2,551,358	+		EFB2_02411	0.17	+1.6
2,551,359	-		EFB2_02411	0.17	+1.1
2,551,359	-		EFB2_02411	0.17	+4.9
2,551,360	+		EFB2_02411	0.17	+0.2
2,551,360	+		EFB2_02411	0.17	-1.5
2,551,370	+		EFB2_02411	0.18	+0.2
2,551,370	+		EFB2_02411	0.18	-2.2
2,551,370	+		EFB2_02411	0.18	-0.4
2,551,370	+		EFB2_02411	0.18	-1.7
2,551,370	+		EFB2_02411	0.18	-1.3
2,551,417	+		EFB2_02411	0.22	-2.0
2,551,417	+		EFB2_02411	0.22	+0.4
2,551,435	+		EFB2_02411	0.24	-1.9
2,551,435	+		EFB2_02411	0.24	-1.6
2,551,436	-		EFB2_02411	0.24	+3.0
2,551,436	-		EFB2_02411	0.24	-1.4
2,551,464	-		EFB2_02411	0.26	+2.0
2,551,470	+		EFB2_02411	0.27	+0.8
2,551,505	+		EFB2_02411	0.29	-1.7
2,551,505	+		EFB2_02411	0.29	-1.0
2,551,514	-		EFB2_02411	0.30	+2.2
2,551,528	+		EFB2_02411	0.31	+0.2
2,551,528	+		EFB2_02411	0.31	-0.8
2,551,529	-		EFB2_02411	0.31	-1.4
2,551,529	-		EFB2_02411	0.31	-0.0
2,551,550	+		EFB2_02411	0.33	-0.5
2,551,550	+		EFB2_02411	0.33	+0.9
2,551,551	-		EFB2_02411	0.33	-2.5
2,551,610	-		EFB2_02411	0.38	-1.6
2,551,610	-		EFB2_02411	0.38	+2.6
2,551,622	+		EFB2_02411	0.39	+2.6
2,551,622	+		EFB2_02411	0.39	+2.2
2,551,639	+		EFB2_02411	0.40	-0.9
2,551,639	+		EFB2_02411	0.40	-0.2
2,551,639	+		EFB2_02411	0.40	-0.5
2,551,652	+		EFB2_02411	0.41	+1.7
2,551,652	+		EFB2_02411	0.41	+2.0
2,551,652	+		EFB2_02411	0.41	+0.5
2,551,652	+		EFB2_02411	0.41	+0.7
2,551,653	-		EFB2_02411	0.42	+1.6
2,551,653	-		EFB2_02411	0.42	-0.2
2,551,709	+		EFB2_02411	0.46	+0.0
2,551,709	+		EFB2_02411	0.46	-1.4
2,551,710	-		EFB2_02411	0.46	-2.6
2,551,743	+		EFB2_02411	0.49	+0.6
2,551,744	-		EFB2_02411	0.49	+1.0
2,551,747	+		EFB2_02411	0.49	-0.3
2,551,747	+		EFB2_02411	0.49	-1.1
2,551,747	+		EFB2_02411	0.49	-1.0
2,551,748	-		EFB2_02411	0.49	-1.0
2,551,748	-		EFB2_02411	0.49	-1.8
2,551,748	-		EFB2_02411	0.49	-0.9
2,551,748	-		EFB2_02411	0.49	+1.0
2,551,748	-		EFB2_02411	0.49	+0.7
2,551,804	+		EFB2_02411	0.54	-1.8
2,551,805	-		EFB2_02411	0.54	+3.6
2,551,825	+		EFB2_02411	0.56	-2.0
2,551,912	+		EFB2_02411	0.63	-0.7
2,551,912	+		EFB2_02411	0.63	+0.6
2,551,912	+		EFB2_02411	0.63	+4.0
2,551,912	+		EFB2_02411	0.63	-2.6
2,551,912	+		EFB2_02411	0.63	-0.1
2,551,913	-		EFB2_02411	0.63	-1.0
2,551,913	-		EFB2_02411	0.63	+0.6
2,551,913	-		EFB2_02411	0.63	-0.9
2,551,913	-		EFB2_02411	0.63	+0.3
2,551,994	+		EFB2_02411	0.70	+1.2
2,551,994	+		EFB2_02411	0.70	-0.0
2,551,994	+		EFB2_02411	0.70	-0.5
2,551,994	+		EFB2_02411	0.70	-1.5
2,551,994	+		EFB2_02411	0.70	-1.2
2,551,995	-		EFB2_02411	0.70	-0.6
2,551,995	-		EFB2_02411	0.70	-0.2
2,551,995	-		EFB2_02411	0.70	+0.4
2,551,996	+		EFB2_02411	0.70	+1.5
2,551,996	+		EFB2_02411	0.70	+1.0
2,551,996	+		EFB2_02411	0.70	-0.6
2,551,996	+		EFB2_02411	0.70	+2.7
2,551,997	-		EFB2_02411	0.70	+1.3
2,552,066	+		EFB2_02411	0.76	+1.2
2,552,073	+		EFB2_02411	0.76	+0.7
2,552,073	+		EFB2_02411	0.76	-1.2
2,552,073	+		EFB2_02411	0.76	+1.4
2,552,073	+		EFB2_02411	0.76	+1.9
2,552,074	-		EFB2_02411	0.76	+0.3
2,552,074	-		EFB2_02411	0.76	-0.8
2,552,077	+		EFB2_02411	0.76	-2.0
2,552,077	+		EFB2_02411	0.76	+0.5
2,552,077	+		EFB2_02411	0.76	-2.3
2,552,077	+		EFB2_02411	0.76	+2.2
2,552,077	+		EFB2_02411	0.76	+0.3
2,552,077	+		EFB2_02411	0.76	+0.4
2,552,077	+		EFB2_02411	0.76	-1.7
2,552,078	-		EFB2_02411	0.77	-0.0
2,552,078	-		EFB2_02411	0.77	-0.0
2,552,078	-		EFB2_02411	0.77	+1.8
2,552,078	-		EFB2_02411	0.77	-0.2
2,552,171	+		EFB2_02411	0.84	-1.0
2,552,171	+		EFB2_02411	0.84	+0.6
2,552,171	+		EFB2_02411	0.84	+3.0
2,552,171	+		EFB2_02411	0.84	+0.2
2,552,171	+		EFB2_02411	0.84	+1.3
2,552,171	+		EFB2_02411	0.84	+1.4
2,552,171	+		EFB2_02411	0.84	-1.2
2,552,171	+		EFB2_02411	0.84	-0.9
2,552,172	-		EFB2_02411	0.84	-2.2
2,552,172	-		EFB2_02411	0.84	-1.1
2,552,172	-		EFB2_02411	0.84	+0.6
2,552,172	-		EFB2_02411	0.84	-1.2
2,552,172	-		EFB2_02411	0.84	+0.8
2,552,172	-		EFB2_02411	0.84	+0.3
2,552,180	+		EFB2_02411	0.85	+1.2
2,552,234	+		EFB2_02411	0.89	+0.0
2,552,234	+		EFB2_02411	0.89	-0.2
2,552,234	+		EFB2_02411	0.89	+1.3
2,552,234	+		EFB2_02411	0.89	+1.1
2,552,234	+		EFB2_02411	0.89	-1.1
2,552,234	+		EFB2_02411	0.89	-2.0
2,552,234	+		EFB2_02411	0.89	-1.7
2,552,234	+		EFB2_02411	0.89	-1.8
2,552,235	-		EFB2_02411	0.89	-0.1
2,552,235	-		EFB2_02411	0.89	-1.3
2,552,235	-		EFB2_02411	0.89	-1.0
2,552,235	-		EFB2_02411	0.89	-1.8
2,552,235	-		EFB2_02411	0.89	+1.7
2,552,235	-		EFB2_02411	0.89	+1.9
2,552,235	-		EFB2_02411	0.89	+3.2
2,552,236	+		EFB2_02411	0.90	+0.6
2,552,236	+		EFB2_02411	0.90	-0.4
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2,553,301	-				+1.3