Strain Fitness in Escherichia fergusonii Becca around EFB2_02378

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,514,006	+		EFB2_02377	0.31	-2.0
2,514,008	+		EFB2_02377	0.31	-2.9
2,514,008	+		EFB2_02377	0.31	-0.0
2,514,008	+		EFB2_02377	0.31	-2.3
2,514,008	+		EFB2_02377	0.31	+0.3
2,514,009	-		EFB2_02377	0.31	-0.6
2,514,009	-		EFB2_02377	0.31	+0.3
2,514,009	-		EFB2_02377	0.31	-0.3
2,514,009	-		EFB2_02377	0.31	+0.3
2,514,009	-		EFB2_02377	0.31	-0.8
2,514,012	+		EFB2_02377	0.31	+2.2
2,514,013	-		EFB2_02377	0.31	+0.5
2,514,017	+		EFB2_02377	0.32	+0.8
2,514,017	+		EFB2_02377	0.32	-2.0
2,514,017	+		EFB2_02377	0.32	+1.5
2,514,022	+		EFB2_02377	0.32	+4.5
2,514,022	+		EFB2_02377	0.32	-0.6
2,514,022	+		EFB2_02377	0.32	-0.4
2,514,023	-		EFB2_02377	0.32	-0.5
2,514,032	+		EFB2_02377	0.33	+0.3
2,514,062	+		EFB2_02377	0.35	+1.5
2,514,062	+		EFB2_02377	0.35	-1.7
2,514,091	+		EFB2_02377	0.38	-1.6
2,514,091	+		EFB2_02377	0.38	-2.8
2,514,091	+		EFB2_02377	0.38	+1.7
2,514,117	-		EFB2_02377	0.40	-1.0
2,514,117	-		EFB2_02377	0.40	-0.9
2,514,149	-		EFB2_02377	0.42	-0.9
2,514,195	+		EFB2_02377	0.46	+1.8
2,514,195	+		EFB2_02377	0.46	-2.0
2,514,195	+		EFB2_02377	0.46	+1.1
2,514,195	+		EFB2_02377	0.46	+0.2
2,514,195	+		EFB2_02377	0.46	+1.0
2,514,195	+		EFB2_02377	0.46	+1.0
2,514,195	+		EFB2_02377	0.46	+1.1
2,514,195	+		EFB2_02377	0.46	-1.7
2,514,196	-		EFB2_02377	0.46	+0.1
2,514,197	+		EFB2_02377	0.46	-1.6
2,514,197	+		EFB2_02377	0.46	-1.0
2,514,266	+		EFB2_02377	0.51	-0.0
2,514,277	-		EFB2_02377	0.52	-2.4
2,514,319	+		EFB2_02377	0.56	+0.6
2,514,327	-		EFB2_02377	0.56	-0.6
2,514,343	+		EFB2_02377	0.57	+0.5
2,514,362	+		EFB2_02377	0.59	+0.4
2,514,362	+		EFB2_02377	0.59	-1.2
2,514,362	+		EFB2_02377	0.59	-2.0
2,514,362	+		EFB2_02377	0.59	+1.1
2,514,362	+		EFB2_02377	0.59	+0.5
2,514,363	-		EFB2_02377	0.59	+2.2
2,514,391	-		EFB2_02377	0.61	+1.1
2,514,409	+		EFB2_02377	0.63	+2.1
2,514,409	+		EFB2_02377	0.63	-0.3
2,514,410	-		EFB2_02377	0.63	-0.3
2,514,416	+		EFB2_02377	0.63	+1.7
2,514,417	-		EFB2_02377	0.63	+0.8
2,514,487	+		EFB2_02377	0.69	+1.0
2,514,487	+		EFB2_02377	0.69	+0.2
2,514,487	+		EFB2_02377	0.69	+0.5
2,514,487	+		EFB2_02377	0.69	-0.0
2,514,487	+		EFB2_02377	0.69	-0.5
2,514,487	+		EFB2_02377	0.69	-2.1
2,514,504	+		EFB2_02377	0.70	-1.2
2,514,504	+		EFB2_02377	0.70	-1.2
2,514,565	+		EFB2_02377	0.75	-1.7
2,514,566	-		EFB2_02377	0.75	-0.0
2,514,578	+		EFB2_02377	0.76	+1.1
2,514,618	+		EFB2_02377	0.79	-0.6
2,514,625	+		EFB2_02377	0.80	+0.5
2,514,718	+		EFB2_02377	0.87	-0.7
2,514,718	+		EFB2_02377	0.87	-0.0
2,514,718	+		EFB2_02377	0.87	+0.5
2,514,718	+		EFB2_02377	0.87	-0.9
2,514,718	+		EFB2_02377	0.87	+0.2
2,514,718	+		EFB2_02377	0.87	+0.2
2,514,718	+		EFB2_02377	0.87	+1.1
2,514,718	+		EFB2_02377	0.87	+0.7
2,514,718	+		EFB2_02377	0.87	+1.4
2,514,718	+		EFB2_02377	0.87	-2.7
2,514,718	+		EFB2_02377	0.87	+2.1
2,514,718	+		EFB2_02377	0.87	-0.7
2,514,718	+		EFB2_02377	0.87	+1.0
2,514,718	+		EFB2_02377	0.87	-0.3
2,514,718	+		EFB2_02377	0.87	+1.5
2,514,718	+		EFB2_02377	0.87	+0.5
2,514,718	+		EFB2_02377	0.87	-0.3
2,514,719	-		EFB2_02377	0.87	+1.5
2,514,725	+		EFB2_02377	0.88	-0.5
2,514,726	-		EFB2_02377	0.88	+1.0
2,514,726	-		EFB2_02377	0.88	+1.8
2,514,732	+		EFB2_02377	0.88	-1.3
2,514,754	+		EFB2_02377	0.90	+0.7
2,514,754	+		EFB2_02377	0.90	-0.5
2,514,834	+				-0.5
2,514,834	+				-0.0
2,514,854	+				+0.3
2,514,855	-				+2.5
2,514,861	+				+3.2
2,514,862	-				+0.5
2,514,869	+				-1.9
2,514,869	+				-0.4
2,514,869	+				+1.0
2,514,880	-				-2.4
2,514,927	+				+2.5
2,514,928	-				-1.6
2,514,928	-				-0.5
2,514,928	-				-1.7
2,514,940	+				+1.1
2,514,948	-				-2.6
2,514,963	-				-1.4
2,514,963	-				-1.1
2,514,983	-				+0.5
2,514,983	-				+0.8
2,514,983	-				-3.0
2,514,983	-				+1.3
2,515,026	-				+0.6
2,515,026	-				+1.4
2,515,041	+				+0.7
2,515,041	+				-1.6
2,515,041	+				+0.7
2,515,041	+				+1.4
2,515,041	+				-2.0
2,515,041	+				-0.0
2,515,041	+				+0.2
2,515,042	-				-0.9
2,515,042	-				+0.7
2,515,042	-				+0.4
2,515,042	-				+1.0
2,515,042	-				-2.5
2,515,042	-				-0.5
2,515,042	-				-2.1
2,515,063	+				+0.5
2,515,063	+				-2.2
2,515,063	+				+2.5
2,515,064	-				+0.3
2,515,064	-				+1.7
2,515,064	-				+1.0
2,515,064	-				-1.4
2,515,064	-				+3.3
2,515,064	-				+0.8
2,515,158	+		EFB2_02378	0.15	+1.3
2,515,238	-		EFB2_02378	0.21	-0.6
2,515,364	-		EFB2_02378	0.29	+1.0
2,515,366	+		EFB2_02378	0.29	+0.2
2,515,366	+		EFB2_02378	0.29	+1.5
2,515,366	+		EFB2_02378	0.29	-1.0
2,515,366	+		EFB2_02378	0.29	+0.2
2,515,367	-		EFB2_02378	0.29	+0.4
2,515,406	-		EFB2_02378	0.32	+0.5
2,515,492	+		EFB2_02378	0.38	+0.5
2,515,493	-		EFB2_02378	0.38	-0.0
2,515,493	-		EFB2_02378	0.38	-1.8
2,515,493	-		EFB2_02378	0.38	+1.5
2,515,493	-		EFB2_02378	0.38	+0.9
2,515,493	-		EFB2_02378	0.38	-0.0
2,515,493	-		EFB2_02378	0.38	+0.3
2,515,494	+		EFB2_02378	0.38	+0.7
2,515,494	+		EFB2_02378	0.38	+1.2
2,515,494	+		EFB2_02378	0.38	+2.0
2,515,495	-		EFB2_02378	0.38	-0.0
2,515,495	-		EFB2_02378	0.38	-1.9
2,515,495	-		EFB2_02378	0.38	-1.0
2,515,495	-		EFB2_02378	0.38	+0.5
2,515,495	-		EFB2_02378	0.38	+0.1
2,515,495	-		EFB2_02378	0.38	-1.3
2,515,495	-		EFB2_02378	0.38	-2.3
2,515,495	-		EFB2_02378	0.38	+0.2
2,515,505	-		EFB2_02378	0.38	+2.0
2,515,581	-		EFB2_02378	0.43	-2.0
2,515,581	-		EFB2_02378	0.43	-2.5
2,515,603	-		EFB2_02378	0.45	-0.6
2,515,616	-		EFB2_02378	0.46	-2.3
2,515,628	-		EFB2_02378	0.47	-1.1
2,515,628	-		EFB2_02378	0.47	+2.2
2,515,652	-		EFB2_02378	0.48	-0.2
2,515,790	-		EFB2_02378	0.57	+1.5
2,515,792	+		EFB2_02378	0.57	-1.3
2,515,793	-		EFB2_02378	0.57	-0.0
2,515,793	-		EFB2_02378	0.57	-1.3
2,515,793	-		EFB2_02378	0.57	+1.3
2,515,800	-		EFB2_02378	0.58	+2.0
2,515,819	-		EFB2_02378	0.59	-0.6
2,515,870	+		EFB2_02378	0.63	+1.8
2,515,870	+		EFB2_02378	0.63	-1.3
2,515,870	+		EFB2_02378	0.63	-0.8
2,515,870	+		EFB2_02378	0.63	-0.0
2,515,870	+		EFB2_02378	0.63	-1.9
2,515,870	+		EFB2_02378	0.63	-1.7
2,515,871	-		EFB2_02378	0.63	-1.0
2,515,871	-		EFB2_02378	0.63	+1.3
2,515,871	-		EFB2_02378	0.63	+0.2
2,515,871	-		EFB2_02378	0.63	-1.4
2,515,871	-		EFB2_02378	0.63	+0.5
2,515,896	-		EFB2_02378	0.64	-2.6
2,515,915	+		EFB2_02378	0.66	+1.0
2,515,916	-		EFB2_02378	0.66	-0.6
2,515,944	+		EFB2_02378	0.67	+0.3
2,515,990	-		EFB2_02378	0.71	-1.4
2,516,005	+		EFB2_02378	0.72	+1.5
2,516,055	-		EFB2_02378	0.75	+0.0
2,516,063	-		EFB2_02378	0.75	+1.5
2,516,183	-		EFB2_02378	0.83	-2.2
2,516,196	-		EFB2_02378	0.84	-1.8
2,516,196	-		EFB2_02378	0.84	+0.2
2,516,256	+		EFB2_02378	0.88	+1.0
2,516,256	+		EFB2_02378	0.88	-0.5
2,516,256	+		EFB2_02378	0.88	-0.3
2,516,256	+		EFB2_02378	0.88	-0.6
2,516,256	+		EFB2_02378	0.88	+0.3
2,516,257	-		EFB2_02378	0.88	-2.3
2,516,266	-		EFB2_02378	0.89	+1.0
2,516,362	+				-1.9
2,516,362	+				+3.0
2,516,362	+				-0.3
2,516,362	+				+0.2
2,516,363	-				-0.6
2,516,363	-				+0.7
2,516,363	-				+0.5
2,516,363	-				+2.7
2,516,363	-				+0.3
2,516,363	-				+2.8
2,516,363	-				-0.9
2,516,363	-				-0.5
2,516,363	-				+1.4
2,516,364	+				-1.9
2,516,364	+				+2.8
2,516,364	+				-0.9
2,516,365	-				-0.6
2,516,365	-				-1.6
2,516,365	-				+1.5
2,516,365	-				+1.8
2,516,387	+				+2.3
2,516,387	+				-1.0
2,516,387	+				+2.0
2,516,387	+				-1.2
2,516,387	+				-0.6
2,516,388	-				-1.8
2,516,388	-				+1.4
2,516,388	-				-0.8
2,516,411	+				+2.5
2,516,434	+				+0.5
2,516,435	-				+0.2
2,516,435	-				+1.5
2,516,447	+				-0.4
2,516,484	+				+0.5
2,516,484	+				-0.6
2,516,484	+				-2.0
2,516,484	+				+0.6
2,516,484	+				+0.1
2,516,485	-				-0.8
2,516,485	-				+2.7
2,516,485	-				+0.8
2,516,485	-				+1.0
2,516,485	-				+1.4
2,516,485	-				-2.5
2,516,486	+				-0.4
2,516,486	+				+0.3
2,516,487	-				+1.0
2,516,487	-				+0.5
2,516,487	-				+0.1
2,516,487	-				+0.4
2,516,487	-				+1.7
2,516,487	-				+0.2
2,516,487	-				+0.4
2,516,487	-				+0.5
2,516,487	-				-2.0
2,516,495	-				-0.6
2,516,495	-				-1.3
2,516,497	+				-0.0
2,516,497	+				-0.9
2,516,498	-				+2.1
2,516,498	-				-2.9
2,516,498	-				+0.5
2,516,503	+				-1.2
2,516,503	+				-0.5
2,516,503	+				-0.8
2,516,504	-				-0.3
2,516,529	-				-0.5
2,516,536	+				+0.1
2,516,537	-				-1.7
2,516,548	+				+0.5
2,516,548	+				+0.2
2,516,606	+				+3.1
2,516,606	+				-0.6
2,516,627	+				-0.6
2,516,628	-				-1.6
2,516,628	-				+1.4
2,516,635	-				-0.0
2,516,635	-				-0.3
2,516,726	+		EFB2_02379	0.16	-0.0
2,516,726	+		EFB2_02379	0.16	-0.3
2,516,727	-		EFB2_02379	0.16	-2.4
2,516,727	-		EFB2_02379	0.16	+0.3
2,516,727	-		EFB2_02379	0.16	-0.5
2,516,727	-		EFB2_02379	0.16	-3.0
2,516,727	-		EFB2_02379	0.16	+0.7
2,516,727	-		EFB2_02379	0.16	-2.2
2,516,727	-		EFB2_02379	0.16	-0.0
2,516,862	-		EFB2_02379	0.28	-0.1
2,516,867	+		EFB2_02379	0.28	-2.2
2,516,867	+		EFB2_02379	0.28	-2.8
2,516,867	+		EFB2_02379	0.28	-0.3
2,516,867	+		EFB2_02379	0.28	+3.0
2,516,867	+		EFB2_02379	0.28	+0.6
2,516,867	+		EFB2_02379	0.28	+1.0
2,516,867	+		EFB2_02379	0.28	-1.0
2,516,867	+		EFB2_02379	0.28	+0.5
2,516,867	+		EFB2_02379	0.28	-1.3
2,516,868	-		EFB2_02379	0.28	-0.6
2,516,868	-		EFB2_02379	0.28	+0.7
2,516,869	+		EFB2_02379	0.28	+3.0
2,516,869	+		EFB2_02379	0.28	+0.2
2,516,869	+		EFB2_02379	0.28	+0.5
2,516,869	+		EFB2_02379	0.28	+0.2
2,516,869	+		EFB2_02379	0.28	-0.5
2,516,869	+		EFB2_02379	0.28	-0.5
2,516,869	+		EFB2_02379	0.28	-0.5
2,516,869	+		EFB2_02379	0.28	+0.7
2,516,869	+		EFB2_02379	0.28	-0.0
2,516,869	+		EFB2_02379	0.28	-1.6
2,516,869	+		EFB2_02379	0.28	+1.5
2,516,870	-		EFB2_02379	0.28	+2.5
2,516,870	-		EFB2_02379	0.28	-1.6
2,516,870	-		EFB2_02379	0.28	-0.5
2,516,870	-		EFB2_02379	0.28	-0.5
2,516,870	-		EFB2_02379	0.28	-3.1
2,516,870	-		EFB2_02379	0.28	+0.8
2,516,870	-		EFB2_02379	0.28	-0.0
2,516,870	-		EFB2_02379	0.28	-0.3
2,516,870	-		EFB2_02379	0.28	+0.1
2,516,870	-		EFB2_02379	0.28	-0.0
2,516,941	+		EFB2_02379	0.35	+2.2
2,516,942	-		EFB2_02379	0.35	-0.6
2,516,942	-		EFB2_02379	0.35	+0.6
2,516,942	-		EFB2_02379	0.35	+0.6
2,517,143	+		EFB2_02379	0.52	+2.0
2,517,143	+		EFB2_02379	0.52	-0.6
2,517,144	-		EFB2_02379	0.52	-1.0
2,517,144	-		EFB2_02379	0.52	-2.5
2,517,323	+		EFB2_02379	0.67	-0.3
2,517,324	-		EFB2_02379	0.67	+2.1
2,517,324	-		EFB2_02379	0.67	-0.9
2,517,332	+		EFB2_02379	0.68	+1.0
2,517,332	+		EFB2_02379	0.68	-1.5
2,517,332	+		EFB2_02379	0.68	+0.6
2,517,332	+		EFB2_02379	0.68	+0.2
2,517,332	+		EFB2_02379	0.68	+2.5
2,517,333	-		EFB2_02379	0.68	+2.0
2,517,333	-		EFB2_02379	0.68	-0.0
2,517,334	+		EFB2_02379	0.68	+0.5
2,517,334	+		EFB2_02379	0.68	-0.5
2,517,334	+		EFB2_02379	0.68	-1.9
2,517,334	+		EFB2_02379	0.68	+2.5
2,517,334	+		EFB2_02379	0.68	+1.2
2,517,334	+		EFB2_02379	0.68	+1.3
2,517,334	+		EFB2_02379	0.68	+2.3
2,517,334	+		EFB2_02379	0.68	-0.5
2,517,334	+		EFB2_02379	0.68	+1.9
2,517,335	-		EFB2_02379	0.68	-0.9
2,517,335	-		EFB2_02379	0.68	+0.5
2,517,335	-		EFB2_02379	0.68	-1.0
2,517,335	-		EFB2_02379	0.68	+1.5
2,517,335	-		EFB2_02379	0.68	-0.3
2,517,335	-		EFB2_02379	0.68	-2.1
2,517,338	+		EFB2_02379	0.68	+1.5
2,517,338	+		EFB2_02379	0.68	-2.7
2,517,339	-		EFB2_02379	0.68	-0.8
2,517,339	-		EFB2_02379	0.68	+0.2
2,517,339	-		EFB2_02379	0.68	+1.3
2,517,339	-		EFB2_02379	0.68	+0.2
2,517,339	-		EFB2_02379	0.68	+1.1