Strain Fitness in Escherichia fergusonii Becca around EFB2_02312

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,449,430	+		EFB2_02311	0.22	+0.3
2,449,430	+		EFB2_02311	0.22	+1.4
2,449,431	-		EFB2_02311	0.22	+0.3
2,449,431	-		EFB2_02311	0.22	+0.5
2,449,431	-		EFB2_02311	0.22	+0.1
2,449,431	-		EFB2_02311	0.22	-0.5
2,449,431	-		EFB2_02311	0.22	-1.7
2,449,513	+		EFB2_02311	0.28	+2.5
2,449,513	+		EFB2_02311	0.28	+1.7
2,449,514	-		EFB2_02311	0.28	+2.2
2,449,615	-		EFB2_02311	0.36	+0.5
2,449,621	+		EFB2_02311	0.37	-1.8
2,449,621	+		EFB2_02311	0.37	+0.2
2,449,621	+		EFB2_02311	0.37	+1.0
2,449,621	+		EFB2_02311	0.37	-1.2
2,449,621	+		EFB2_02311	0.37	+2.2
2,449,621	+		EFB2_02311	0.37	-1.8
2,449,621	+		EFB2_02311	0.37	+0.1
2,449,621	+		EFB2_02311	0.37	-2.0
2,449,621	+		EFB2_02311	0.37	-2.5
2,449,622	-		EFB2_02311	0.37	+0.2
2,449,622	-		EFB2_02311	0.37	-2.5
2,449,622	-		EFB2_02311	0.37	-2.0
2,449,622	-		EFB2_02311	0.37	+1.5
2,449,654	+		EFB2_02311	0.39	+0.1
2,449,654	+		EFB2_02311	0.39	-0.0
2,449,729	+		EFB2_02311	0.45	+1.1
2,449,730	-		EFB2_02311	0.45	+1.9
2,449,730	-		EFB2_02311	0.45	-0.8
2,449,765	+		EFB2_02311	0.48	-0.2
2,449,798	+		EFB2_02311	0.51	+0.2
2,449,798	+		EFB2_02311	0.51	+1.5
2,449,798	+		EFB2_02311	0.51	+1.0
2,449,798	+		EFB2_02311	0.51	+0.2
2,449,798	+		EFB2_02311	0.51	-1.4
2,449,798	+		EFB2_02311	0.51	-1.4
2,449,799	-		EFB2_02311	0.51	-0.3
2,449,799	-		EFB2_02311	0.51	+0.5
2,449,799	-		EFB2_02311	0.51	-0.5
2,449,844	-		EFB2_02311	0.54	+1.0
2,449,879	+		EFB2_02311	0.57	+1.3
2,449,879	+		EFB2_02311	0.57	+2.2
2,449,879	+		EFB2_02311	0.57	-0.9
2,449,879	+		EFB2_02311	0.57	+1.2
2,449,911	+		EFB2_02311	0.60	-0.1
2,449,956	+		EFB2_02311	0.63	-0.9
2,449,956	+		EFB2_02311	0.63	-0.9
2,449,966	+		EFB2_02311	0.64	-0.3
2,449,966	+		EFB2_02311	0.64	+1.1
2,449,966	+		EFB2_02311	0.64	-0.4
2,449,967	-		EFB2_02311	0.64	-1.5
2,449,967	-		EFB2_02311	0.64	-2.0
2,449,967	-		EFB2_02311	0.64	+0.3
2,450,002	+		EFB2_02311	0.67	+0.2
2,450,002	+		EFB2_02311	0.67	-1.7
2,450,002	+		EFB2_02311	0.67	-0.6
2,450,008	+		EFB2_02311	0.67	-1.9
2,450,008	+		EFB2_02311	0.67	-1.8
2,450,008	+		EFB2_02311	0.67	-0.7
2,450,009	-		EFB2_02311	0.67	+1.5
2,450,026	+		EFB2_02311	0.69	-0.5
2,450,038	+		EFB2_02311	0.69	-1.9
2,450,063	-		EFB2_02311	0.71	-1.0
2,450,089	-		EFB2_02311	0.74	-1.4
2,450,092	+		EFB2_02311	0.74	+0.5
2,450,092	+		EFB2_02311	0.74	+1.0
2,450,152	+		EFB2_02311	0.78	-0.0
2,450,152	+		EFB2_02311	0.78	-1.2
2,450,152	+		EFB2_02311	0.78	-0.3
2,450,152	+		EFB2_02311	0.78	+2.0
2,450,153	-		EFB2_02311	0.79	-0.6
2,450,153	-		EFB2_02311	0.79	+0.2
2,450,153	-		EFB2_02311	0.79	-1.8
2,450,153	-		EFB2_02311	0.79	-1.1
2,450,188	+		EFB2_02311	0.81	+1.3
2,450,188	+		EFB2_02311	0.81	-0.3
2,450,188	+		EFB2_02311	0.81	+0.5
2,450,188	+		EFB2_02311	0.81	+1.6
2,450,207	+		EFB2_02311	0.83	-0.2
2,450,207	+		EFB2_02311	0.83	+0.5
2,450,207	+		EFB2_02311	0.83	-1.3
2,450,251	+		EFB2_02311	0.86	+0.3
2,450,273	+		EFB2_02311	0.88	-0.4
2,450,324	+				-0.8
2,450,324	+				-2.9
2,450,324	+				-0.5
2,450,325	-				+1.0
2,450,325	-				+1.8
2,450,371	+				+1.7
2,450,477	+				+1.0
2,450,497	+				+2.1
2,450,498	-				+1.3
2,450,561	-		EFB2_02312	0.11	-0.0
2,450,561	-		EFB2_02312	0.11	-1.0
2,450,598	+		EFB2_02312	0.14	+0.5
2,450,598	+		EFB2_02312	0.14	+1.3
2,450,603	+		EFB2_02312	0.15	-1.6
2,450,603	+		EFB2_02312	0.15	-0.3
2,450,603	+		EFB2_02312	0.15	-0.5
2,450,604	-		EFB2_02312	0.15	-0.6
2,450,604	-		EFB2_02312	0.15	+0.5
2,450,658	+		EFB2_02312	0.19	+0.5
2,450,658	+		EFB2_02312	0.19	-2.2
2,450,659	-		EFB2_02312	0.19	-1.8
2,450,661	+		EFB2_02312	0.20	+3.3
2,450,661	+		EFB2_02312	0.20	+1.1
2,450,662	-		EFB2_02312	0.20	+2.1
2,450,730	+		EFB2_02312	0.25	-1.3
2,450,797	-		EFB2_02312	0.31	-1.1
2,450,871	+		EFB2_02312	0.37	+1.3
2,450,871	+		EFB2_02312	0.37	-1.1
2,450,872	-		EFB2_02312	0.37	-1.0
2,450,931	+		EFB2_02312	0.42	+0.2
2,450,931	+		EFB2_02312	0.42	-0.0
2,450,931	+		EFB2_02312	0.42	+1.5
2,450,931	+		EFB2_02312	0.42	+2.0
2,450,931	+		EFB2_02312	0.42	-1.2
2,450,931	+		EFB2_02312	0.42	+0.6
2,450,931	+		EFB2_02312	0.42	-0.5
2,450,931	+		EFB2_02312	0.42	-0.5
2,450,931	+		EFB2_02312	0.42	-1.5
2,450,931	+		EFB2_02312	0.42	-1.4
2,450,931	+		EFB2_02312	0.42	-1.5
2,450,931	+		EFB2_02312	0.42	+1.5
2,450,931	+		EFB2_02312	0.42	+1.5
2,450,931	+		EFB2_02312	0.42	-2.0
2,450,931	+		EFB2_02312	0.42	+1.7
2,450,931	+		EFB2_02312	0.42	+2.5
2,450,931	+		EFB2_02312	0.42	-1.5
2,450,931	+		EFB2_02312	0.42	+1.5
2,450,932	-		EFB2_02312	0.42	+0.2
2,450,932	-		EFB2_02312	0.42	-0.8
2,450,932	-		EFB2_02312	0.42	-0.3
2,450,932	-		EFB2_02312	0.42	+1.1
2,450,932	-		EFB2_02312	0.42	-1.6
2,450,932	-		EFB2_02312	0.42	+1.3
2,451,079	+		EFB2_02312	0.54	+0.3
2,451,080	-		EFB2_02312	0.54	-0.6
2,451,096	+		EFB2_02312	0.55	-1.5
2,451,096	+		EFB2_02312	0.55	-0.0
2,451,096	+		EFB2_02312	0.55	+0.6
2,451,097	-		EFB2_02312	0.55	+1.3
2,451,103	+		EFB2_02312	0.56	+0.5
2,451,104	-		EFB2_02312	0.56	+0.4
2,451,130	+		EFB2_02312	0.58	-0.5
2,451,130	+		EFB2_02312	0.58	+1.7
2,451,130	+		EFB2_02312	0.58	+3.7
2,451,130	+		EFB2_02312	0.58	+1.0
2,451,130	+		EFB2_02312	0.58	+2.3
2,451,130	+		EFB2_02312	0.58	+1.6
2,451,131	-		EFB2_02312	0.58	+0.2
2,451,131	-		EFB2_02312	0.58	+1.5
2,451,131	-		EFB2_02312	0.58	+1.7
2,451,131	-		EFB2_02312	0.58	+1.5
2,451,131	-		EFB2_02312	0.58	+1.5
2,451,131	-		EFB2_02312	0.58	+0.3
2,451,183	+		EFB2_02312	0.62	-0.0
2,451,183	+		EFB2_02312	0.62	+2.0
2,451,183	+		EFB2_02312	0.62	-2.2
2,451,183	+		EFB2_02312	0.62	-1.0
2,451,184	-		EFB2_02312	0.62	-1.4
2,451,216	+		EFB2_02312	0.65	-0.8
2,451,216	+		EFB2_02312	0.65	-2.0
2,451,216	+		EFB2_02312	0.65	+0.1
2,451,217	-		EFB2_02312	0.65	+0.2
2,451,261	+		EFB2_02312	0.69	+1.2
2,451,270	+		EFB2_02312	0.69	+1.5
2,451,270	+		EFB2_02312	0.69	+2.1
2,451,270	+		EFB2_02312	0.69	+0.5
2,451,270	+		EFB2_02312	0.69	+0.4
2,451,270	+		EFB2_02312	0.69	+1.4
2,451,270	+		EFB2_02312	0.69	+2.3
2,451,271	-		EFB2_02312	0.70	-1.2
2,451,273	+		EFB2_02312	0.70	-1.0
2,451,273	+		EFB2_02312	0.70	+0.5
2,451,273	+		EFB2_02312	0.70	+1.7
2,451,273	+		EFB2_02312	0.70	-0.4
2,451,274	-		EFB2_02312	0.70	-1.8
2,451,298	+		EFB2_02312	0.72	+1.3
2,451,298	+		EFB2_02312	0.72	-1.7
2,451,298	+		EFB2_02312	0.72	-1.6
2,451,298	+		EFB2_02312	0.72	+1.4
2,451,298	+		EFB2_02312	0.72	+3.3
2,451,298	+		EFB2_02312	0.72	-2.2
2,451,299	-		EFB2_02312	0.72	+1.4
2,451,299	-		EFB2_02312	0.72	-2.5
2,451,299	-		EFB2_02312	0.72	+1.1
2,451,299	-		EFB2_02312	0.72	-1.2
2,451,319	-		EFB2_02312	0.73	+0.2
2,451,335	-		EFB2_02312	0.75	+1.0
2,451,335	-		EFB2_02312	0.75	-0.0
2,451,335	-		EFB2_02312	0.75	+4.1
2,451,355	+		EFB2_02312	0.76	+1.0
2,451,355	+		EFB2_02312	0.76	+2.5
2,451,356	-		EFB2_02312	0.76	+2.3
2,451,390	+		EFB2_02312	0.79	+0.2
2,451,390	+		EFB2_02312	0.79	+1.6
2,451,390	+		EFB2_02312	0.79	+3.3
2,451,390	+		EFB2_02312	0.79	+2.7
2,451,390	+		EFB2_02312	0.79	-1.3
2,451,391	-		EFB2_02312	0.79	-1.3
2,451,391	-		EFB2_02312	0.79	-1.6
2,451,397	+		EFB2_02312	0.80	-2.4
2,451,397	+		EFB2_02312	0.80	+1.8
2,451,397	+		EFB2_02312	0.80	-0.1
2,451,398	-		EFB2_02312	0.80	-0.6
2,451,432	+		EFB2_02312	0.83	+2.8
2,451,432	+		EFB2_02312	0.83	-0.3
2,451,433	-		EFB2_02312	0.83	-1.2
2,451,433	-		EFB2_02312	0.83	+1.5
2,451,454	+		EFB2_02312	0.85	-2.1
2,451,454	+		EFB2_02312	0.85	+0.2
2,451,454	+		EFB2_02312	0.85	+0.4
2,451,455	-		EFB2_02312	0.85	+1.5
2,451,477	+		EFB2_02312	0.86	-1.4
2,451,477	+		EFB2_02312	0.86	+1.7
2,451,481	+		EFB2_02312	0.87	+0.6
2,451,481	+		EFB2_02312	0.87	-1.0
2,451,481	+		EFB2_02312	0.87	+0.8
2,451,481	+		EFB2_02312	0.87	+0.4
2,451,481	+		EFB2_02312	0.87	-1.4
2,451,481	+		EFB2_02312	0.87	+0.8
2,451,481	+		EFB2_02312	0.87	-1.0
2,451,481	+		EFB2_02312	0.87	+0.2
2,451,481	+		EFB2_02312	0.87	-0.8
2,451,481	+		EFB2_02312	0.87	+2.8
2,451,532	+				-1.1
2,451,532	+				+0.5
2,451,532	+				+1.1
2,451,532	+				+0.5
2,451,533	-				+0.2
2,451,533	-				-1.3
2,451,535	+				+4.2
2,451,535	+				-1.9
2,451,535	+				+0.2
2,451,535	+				-2.1
2,451,535	+				-0.3
2,451,535	+				+1.5
2,451,535	+				+1.5
2,451,535	+				+0.6
2,451,535	+				-1.5
2,451,535	+				-1.8
2,451,535	+				-0.8
2,451,535	+				-0.3
2,451,535	+				-1.8
2,451,535	+				-0.3
2,451,535	+				-0.3
2,451,535	+				+1.6
2,451,536	-				+2.2
2,451,536	-				-1.2
2,451,536	-				+1.9
2,451,536	-				+0.2
2,451,536	-				-2.3
2,451,536	-				-2.1
2,451,536	-				+3.1
2,451,536	-				-0.3
2,451,536	-				+0.1
2,451,536	-				+2.8
2,451,536	-				-0.8
2,451,536	-				-1.4
2,451,574	+				-1.5
2,451,574	+				+0.2
2,451,574	+				-0.3
2,451,574	+				-0.6
2,451,574	+				-0.2
2,451,574	+				-1.2
2,451,574	+				-1.0
2,451,574	+				-0.0
2,451,574	+				-1.5
2,451,574	+				-0.9
2,451,574	+				+1.9
2,451,574	+				+1.3
2,451,574	+				-0.7
2,451,574	+				-1.5
2,451,574	+				+1.5
2,451,574	+				-0.6
2,451,574	+				-1.2
2,451,574	+				+0.2
2,451,574	+				+2.4
2,451,574	+				-0.5
2,451,574	+				-0.0
2,451,574	+				-0.3
2,451,574	+				+1.0
2,451,574	+				-0.6
2,451,574	+				-0.5
2,451,574	+				-1.9
2,451,574	+				-1.2
2,451,574	+				+1.0
2,451,574	+				+1.9
2,451,574	+				-0.1
2,451,574	+				-0.8
2,451,574	+				-1.3
2,451,574	+				+0.5
2,451,574	+				+0.9
2,451,574	+				-0.5
2,451,574	+				+0.9
2,451,575	-				+0.5
2,451,575	-				-0.0
2,451,575	-				-1.5
2,451,575	-				+0.2
2,451,575	-				-0.0
2,451,575	-				-0.6
2,451,575	-				+1.7
2,451,575	-				-1.5
2,451,575	-				-0.0
2,451,575	-				+0.0
2,451,575	-				+1.0
2,451,575	-				+0.7
2,451,575	-				+0.2
2,451,575	-				-0.8
2,451,575	-				+0.7
2,451,575	-				+1.0
2,451,575	-				+4.4
2,451,575	-				-0.5
2,451,575	-				-1.6
2,451,575	-				+2.1
2,451,575	-				-0.2
2,451,575	-				-1.8
2,451,575	-				+1.5
2,451,575	-				+0.5
2,451,575	-				+0.5
2,451,576	+				-2.3
2,451,576	+				+0.5
2,451,576	+				-2.5
2,451,576	+				+2.4
2,451,576	+				+0.7
2,451,576	+				+1.3
2,451,576	+				-1.4
2,451,577	-				-0.5
2,451,577	-				+2.9
2,451,577	-				+2.1
2,451,577	-				-1.9
2,451,577	-				-1.9
2,451,605	+				-0.9
2,451,621	+				-1.9
2,451,621	+				-1.9
2,451,621	+				+2.4
2,451,621	+				+0.4
2,451,621	+				-0.9
2,451,621	+				-1.7
2,451,621	+				-1.5
2,451,621	+				+2.2
2,451,621	+				-0.3
2,451,622	-				+1.3
2,451,622	-				+1.0
2,451,622	-				+1.5
2,451,622	-				-0.3
2,451,622	-				+0.2
2,451,622	-				+2.0
2,451,622	-				+1.5
2,451,622	-				-2.6
2,451,622	-				-1.0
2,451,622	-				+1.2
2,451,622	-				-0.8
2,451,633	-				+2.0
2,451,655	-				-0.3
2,451,655	-				-1.6
2,451,662	+				-1.0
2,451,662	+				+0.2
2,451,663	-				-1.0
2,451,690	+				-0.0
2,451,724	+		EFB2_02313	0.17	+1.5
2,451,724	+		EFB2_02313	0.17	+0.4
2,451,724	+		EFB2_02313	0.17	+0.8
2,451,725	-		EFB2_02313	0.17	-0.9
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