Strain Fitness in Escherichia fergusonii Becca around EFB2_02063

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,212,792	+		EFB2_02061	0.81	-0.0
2,212,792	+		EFB2_02061	0.81	+0.2
2,212,792	+		EFB2_02061	0.81	-1.2
2,212,792	+		EFB2_02061	0.81	-0.6
2,212,792	+		EFB2_02061	0.81	+0.5
2,212,792	+		EFB2_02061	0.81	-2.3
2,212,792	+		EFB2_02061	0.81	+1.0
2,212,792	+		EFB2_02061	0.81	+0.5
2,212,792	+		EFB2_02061	0.81	+1.9
2,212,793	-		EFB2_02061	0.81	+1.4
2,212,809	+		EFB2_02061	0.85	-1.6
2,212,809	+		EFB2_02061	0.85	+0.8
2,212,810	-		EFB2_02061	0.85	+0.9
2,212,876	+				+2.1
2,212,876	+				+3.2
2,212,876	+				-1.1
2,212,876	+				-0.4
2,212,876	+				+2.0
2,212,877	-				-0.7
2,212,877	-				-3.1
2,212,954	+		EFB2_02062	0.12	+1.0
2,212,954	+		EFB2_02062	0.12	+0.6
2,212,954	+		EFB2_02062	0.12	+0.0
2,212,954	+		EFB2_02062	0.12	+0.4
2,212,954	+		EFB2_02062	0.12	-1.5
2,212,955	-		EFB2_02062	0.12	-0.9
2,212,955	-		EFB2_02062	0.12	+0.2
2,212,955	-		EFB2_02062	0.12	+0.8
2,212,955	-		EFB2_02062	0.12	-0.1
2,212,955	-		EFB2_02062	0.12	-1.5
2,213,042	+		EFB2_02062	0.26	-1.3
2,213,042	+		EFB2_02062	0.26	+0.1
2,213,042	+		EFB2_02062	0.26	-0.1
2,213,042	+		EFB2_02062	0.26	-0.4
2,213,042	+		EFB2_02062	0.26	-0.6
2,213,042	+		EFB2_02062	0.26	-3.2
2,213,042	+		EFB2_02062	0.26	-1.5
2,213,042	+		EFB2_02062	0.26	-0.7
2,213,042	+		EFB2_02062	0.26	+1.0
2,213,042	+		EFB2_02062	0.26	+1.4
2,213,042	+		EFB2_02062	0.26	+0.9
2,213,042	+		EFB2_02062	0.26	-1.6
2,213,042	+		EFB2_02062	0.26	+1.4
2,213,043	-		EFB2_02062	0.26	+1.0
2,213,043	-		EFB2_02062	0.26	-0.1
2,213,043	-		EFB2_02062	0.26	-0.1
2,213,045	+		EFB2_02062	0.26	-0.9
2,213,045	+		EFB2_02062	0.26	-0.7
2,213,045	+		EFB2_02062	0.26	+2.4
2,213,045	+		EFB2_02062	0.26	+0.0
2,213,045	+		EFB2_02062	0.26	+1.3
2,213,045	+		EFB2_02062	0.26	-1.4
2,213,045	+		EFB2_02062	0.26	-0.9
2,213,045	+		EFB2_02062	0.26	-1.3
2,213,045	+		EFB2_02062	0.26	+0.7
2,213,045	+		EFB2_02062	0.26	-1.0
2,213,045	+		EFB2_02062	0.26	+0.5
2,213,045	+		EFB2_02062	0.26	+0.6
2,213,045	+		EFB2_02062	0.26	+2.4
2,213,045	+		EFB2_02062	0.26	-0.7
2,213,045	+		EFB2_02062	0.26	+0.1
2,213,045	+		EFB2_02062	0.26	+0.2
2,213,045	+		EFB2_02062	0.26	+1.2
2,213,045	+		EFB2_02062	0.26	+0.1
2,213,045	+		EFB2_02062	0.26	-2.3
2,213,045	+		EFB2_02062	0.26	-0.2
2,213,045	+		EFB2_02062	0.26	-3.0
2,213,045	+		EFB2_02062	0.26	+0.2
2,213,045	+		EFB2_02062	0.26	+0.6
2,213,045	+		EFB2_02062	0.26	+1.0
2,213,045	+		EFB2_02062	0.26	+1.1
2,213,045	+		EFB2_02062	0.26	+1.9
2,213,045	+		EFB2_02062	0.26	+0.7
2,213,045	+		EFB2_02062	0.26	+0.7
2,213,045	+		EFB2_02062	0.26	-0.4
2,213,045	+		EFB2_02062	0.26	+1.1
2,213,045	+		EFB2_02062	0.26	+2.9
2,213,045	+		EFB2_02062	0.26	-0.6
2,213,045	+		EFB2_02062	0.26	+0.4
2,213,046	-		EFB2_02062	0.26	+1.4
2,213,046	-		EFB2_02062	0.26	-0.1
2,213,046	-		EFB2_02062	0.26	+2.5
2,213,046	-		EFB2_02062	0.26	-1.6
2,213,046	-		EFB2_02062	0.26	+0.6
2,213,046	-		EFB2_02062	0.26	-0.6
2,213,046	-		EFB2_02062	0.26	+1.6
2,213,046	-		EFB2_02062	0.26	+1.8
2,213,046	-		EFB2_02062	0.26	+1.4
2,213,046	-		EFB2_02062	0.26	-0.8
2,213,046	-		EFB2_02062	0.26	+1.9
2,213,046	-		EFB2_02062	0.26	-0.4
2,213,046	-		EFB2_02062	0.26	-0.1
2,213,046	-		EFB2_02062	0.26	+1.3
2,213,046	-		EFB2_02062	0.26	-0.4
2,213,046	-		EFB2_02062	0.26	+1.6
2,213,046	-		EFB2_02062	0.26	+1.4
2,213,046	-		EFB2_02062	0.26	+0.5
2,213,046	-		EFB2_02062	0.26	+0.5
2,213,046	-		EFB2_02062	0.26	+1.7
2,213,046	-		EFB2_02062	0.26	-0.5
2,213,046	-		EFB2_02062	0.26	-1.8
2,213,046	-		EFB2_02062	0.26	+0.0
2,213,046	-		EFB2_02062	0.26	-0.4
2,213,046	-		EFB2_02062	0.26	-2.0
2,213,046	-		EFB2_02062	0.26	-3.1
2,213,046	-		EFB2_02062	0.26	+2.3
2,213,046	-		EFB2_02062	0.26	-1.0
2,213,046	-		EFB2_02062	0.26	+1.1
2,213,046	-		EFB2_02062	0.26	+2.2
2,213,046	-		EFB2_02062	0.26	+2.1
2,213,248	+		EFB2_02062	0.58	-1.6
2,213,248	+		EFB2_02062	0.58	+2.6
2,213,248	+		EFB2_02062	0.58	-2.0
2,213,248	+		EFB2_02062	0.58	-0.1
2,213,248	+		EFB2_02062	0.58	+0.2
2,213,248	+		EFB2_02062	0.58	+2.2
2,213,248	+		EFB2_02062	0.58	+1.1
2,213,249	-		EFB2_02062	0.58	+1.7
2,213,249	-		EFB2_02062	0.58	-2.4
2,213,249	-		EFB2_02062	0.58	-0.8
2,213,249	-		EFB2_02062	0.58	-1.0
2,213,249	-		EFB2_02062	0.58	+1.4
2,213,249	-		EFB2_02062	0.58	+0.7
2,213,249	-		EFB2_02062	0.58	+1.1
2,213,257	+		EFB2_02062	0.59	+0.4
2,213,257	+		EFB2_02062	0.59	+0.1
2,213,257	+		EFB2_02062	0.59	-2.0
2,213,257	+		EFB2_02062	0.59	+0.3
2,213,258	-		EFB2_02062	0.59	-0.5
2,213,258	-		EFB2_02062	0.59	+1.0
2,213,258	-		EFB2_02062	0.59	+0.1
2,213,258	-		EFB2_02062	0.59	-1.4
2,213,258	-		EFB2_02062	0.59	-2.4
2,213,323	+		EFB2_02062	0.69	+0.6
2,213,324	-		EFB2_02062	0.69	-0.9
2,213,324	-		EFB2_02062	0.69	-0.0
2,213,472	+				+0.1
2,213,473	-				-0.2
2,213,506	+				+1.2
2,213,506	+				-2.8
2,213,507	-				-0.7
2,213,526	+				+1.5
2,213,526	+				+1.7
2,213,526	+				-1.1
2,213,526	+				+0.6
2,213,526	+				-2.3
2,213,526	+				-1.6
2,213,526	+				+0.3
2,213,527	-				+2.4
2,213,585	-				+0.3
2,213,638	+				+0.3
2,213,638	+				+1.3
2,213,661	+				-2.7
2,213,661	+				+0.9
2,213,662	-				-1.0
2,213,662	-				-1.0
2,213,699	+				-1.8
2,213,699	+				-1.9
2,213,699	+				-1.5
2,213,700	-				-0.1
2,213,700	-				-0.9
2,213,700	-				+1.1
2,213,700	-				+1.1
2,213,705	+				-0.5
2,213,705	+				+0.7
2,213,705	+				+0.9
2,213,705	+				-1.6
2,213,706	-				+0.6
2,213,706	-				+0.6
2,213,706	-				-2.7
2,213,706	-				-1.3
2,213,706	-				-1.3
2,213,706	-				+0.3
2,213,706	-				+0.0
2,213,706	-				+0.4
2,213,706	-				+1.9
2,213,708	+				+1.9
2,213,708	+				+0.5
2,213,708	+				+2.3
2,213,708	+				-0.9
2,213,708	+				+1.7
2,213,708	+				-2.2
2,213,709	-				-0.6
2,213,709	-				+1.9
2,213,709	-				+1.7
2,213,861	+		EFB2_02063	0.11	-2.6
2,213,862	-		EFB2_02063	0.11	+2.4
2,213,862	-		EFB2_02063	0.11	-1.5
2,213,862	-		EFB2_02063	0.11	-1.7
2,213,862	-		EFB2_02063	0.11	-1.4
2,213,862	-		EFB2_02063	0.11	-0.3
2,213,936	+		EFB2_02063	0.18	-0.9
2,213,936	+		EFB2_02063	0.18	+1.6
2,213,936	+		EFB2_02063	0.18	-1.9
2,213,936	+		EFB2_02063	0.18	-2.3
2,213,936	+		EFB2_02063	0.18	-0.4
2,213,936	+		EFB2_02063	0.18	+0.4
2,213,936	+		EFB2_02063	0.18	-1.6
2,213,937	-		EFB2_02063	0.18	+0.2
2,213,937	-		EFB2_02063	0.18	+2.1
2,213,937	-		EFB2_02063	0.18	+0.9
2,213,937	-		EFB2_02063	0.18	+0.4
2,213,937	-		EFB2_02063	0.18	+1.9
2,213,937	-		EFB2_02063	0.18	+0.3
2,213,937	-		EFB2_02063	0.18	+0.0
2,213,937	-		EFB2_02063	0.18	-1.8
2,213,939	+		EFB2_02063	0.18	-0.9
2,213,939	+		EFB2_02063	0.18	+0.4
2,213,939	+		EFB2_02063	0.18	-1.1
2,213,939	+		EFB2_02063	0.18	+0.2
2,213,939	+		EFB2_02063	0.18	-1.6
2,213,940	-		EFB2_02063	0.18	-0.1
2,213,940	-		EFB2_02063	0.18	+0.4
2,213,972	+		EFB2_02063	0.21	-1.1
2,213,972	+		EFB2_02063	0.21	+0.5
2,213,973	-		EFB2_02063	0.21	-1.6
2,214,041	+		EFB2_02063	0.27	-1.2
2,214,041	+		EFB2_02063	0.27	-1.3
2,214,041	+		EFB2_02063	0.27	-0.1
2,214,041	+		EFB2_02063	0.27	+0.9
2,214,070	+		EFB2_02063	0.30	+1.1
2,214,070	+		EFB2_02063	0.30	-1.9
2,214,071	-		EFB2_02063	0.30	-1.6
2,214,074	+		EFB2_02063	0.30	+0.6
2,214,128	+		EFB2_02063	0.35	+1.1
2,214,129	-		EFB2_02063	0.35	+0.3
2,214,129	-		EFB2_02063	0.35	+1.6
2,214,247	+		EFB2_02063	0.45	-3.1
2,214,279	-		EFB2_02063	0.48	-2.6
2,214,301	+		EFB2_02063	0.50	+0.1
2,214,301	+		EFB2_02063	0.50	-3.1
2,214,302	-		EFB2_02063	0.50	+0.6
2,214,302	-		EFB2_02063	0.50	+2.8
2,214,446	+		EFB2_02063	0.62	-1.6
2,214,446	+		EFB2_02063	0.62	+1.0
2,214,447	-		EFB2_02063	0.62	+0.5
2,214,447	-		EFB2_02063	0.62	-0.1
2,214,561	+		EFB2_02063	0.72	+1.5
2,214,600	-		EFB2_02063	0.76	-1.3
2,214,600	-		EFB2_02063	0.76	+0.1
2,214,650	+		EFB2_02063	0.80	-1.1
2,214,650	+		EFB2_02063	0.80	-1.9
2,214,694	-		EFB2_02063	0.84	+0.4
2,214,735	+		EFB2_02063	0.87	-3.1
2,214,735	+		EFB2_02063	0.87	+0.5
2,214,736	-		EFB2_02063	0.88	-2.8
2,214,736	-		EFB2_02063	0.88	-0.1
2,214,811	+				-1.8
2,214,811	+				+2.4
2,214,811	+				+1.8
2,214,811	+				+0.7
2,214,811	+				+1.9
2,214,812	-				-0.4
2,214,812	-				-1.3
2,214,812	-				+0.4
2,214,812	-				+2.8
2,214,812	-				-1.5
2,214,818	+				+2.4
2,214,818	+				-0.4
2,214,818	+				+1.5
2,214,818	+				-3.1
2,214,818	+				-2.0
2,214,818	+				+0.4
2,214,818	+				-0.6
2,214,818	+				-2.5
2,214,818	+				-2.6
2,214,819	-				-0.4
2,214,819	-				-0.3
2,214,819	-				-1.4
2,214,819	-				+1.2
2,214,819	-				+2.4
2,214,819	-				+6.1
2,214,819	-				+0.9
2,214,877	-				-1.6
2,214,978	-				-0.1
2,215,015	-				+0.5
2,215,110	+		EFB2_02064	0.11	-1.7
2,215,110	+		EFB2_02064	0.11	-0.3
2,215,110	+		EFB2_02064	0.11	-2.3
2,215,134	+		EFB2_02064	0.13	+0.5
2,215,134	+		EFB2_02064	0.13	-1.8
2,215,134	+		EFB2_02064	0.13	-2.4
2,215,134	+		EFB2_02064	0.13	-1.8
2,215,134	+		EFB2_02064	0.13	+1.0
2,215,135	-		EFB2_02064	0.13	-1.4
2,215,135	-		EFB2_02064	0.13	-0.4
2,215,153	-		EFB2_02064	0.14	+1.7
2,215,173	+		EFB2_02064	0.15	-2.7
2,215,173	+		EFB2_02064	0.15	-0.2
2,215,284	+		EFB2_02064	0.20	+2.2
2,215,284	+		EFB2_02064	0.20	-0.6
2,215,284	+		EFB2_02064	0.20	+0.7
2,215,284	+		EFB2_02064	0.20	-1.1
2,215,284	+		EFB2_02064	0.20	-1.3
2,215,285	-		EFB2_02064	0.20	+2.9
2,215,290	+		EFB2_02064	0.20	-1.4
2,215,312	-		EFB2_02064	0.21	+0.4
2,215,312	-		EFB2_02064	0.21	-1.8
2,215,347	+		EFB2_02064	0.23	+0.3
2,215,347	+		EFB2_02064	0.23	+1.6
2,215,347	+		EFB2_02064	0.23	-3.1
2,215,348	-		EFB2_02064	0.23	-1.4
2,215,348	-		EFB2_02064	0.23	-0.1
2,215,348	-		EFB2_02064	0.23	+1.1
2,215,383	+		EFB2_02064	0.25	-1.7
2,215,383	+		EFB2_02064	0.25	-1.9
2,215,476	+		EFB2_02064	0.29	-0.1
2,215,476	+		EFB2_02064	0.29	-1.0
2,215,476	+		EFB2_02064	0.29	-2.0
2,215,476	+		EFB2_02064	0.29	-1.4
2,215,476	+		EFB2_02064	0.29	+1.7
2,215,476	+		EFB2_02064	0.29	+1.1
2,215,477	-		EFB2_02064	0.29	+0.5
2,215,477	-		EFB2_02064	0.29	+1.4
2,215,477	-		EFB2_02064	0.29	-2.4
2,215,524	+		EFB2_02064	0.31	-0.4
2,215,594	+		EFB2_02064	0.35	-1.1
2,215,594	+		EFB2_02064	0.35	+1.6
2,215,594	+		EFB2_02064	0.35	+1.6
2,215,594	+		EFB2_02064	0.35	-0.0
2,215,594	+		EFB2_02064	0.35	-2.4
2,215,594	+		EFB2_02064	0.35	-0.1
2,215,594	+		EFB2_02064	0.35	-1.4
2,215,595	-		EFB2_02064	0.35	+0.5
2,215,595	-		EFB2_02064	0.35	-0.1
2,215,595	-		EFB2_02064	0.35	-0.1
2,215,595	-		EFB2_02064	0.35	-0.5
2,215,595	-		EFB2_02064	0.35	-0.4
2,215,595	-		EFB2_02064	0.35	-1.3
2,215,595	-		EFB2_02064	0.35	-0.5
2,215,595	-		EFB2_02064	0.35	-2.5
2,215,595	-		EFB2_02064	0.35	-1.0
2,215,595	-		EFB2_02064	0.35	+2.9
2,215,595	-		EFB2_02064	0.35	-1.1
2,215,595	-		EFB2_02064	0.35	-0.6
2,215,596	+		EFB2_02064	0.35	+0.3
2,215,596	+		EFB2_02064	0.35	+0.6
2,215,596	+		EFB2_02064	0.35	+0.3
2,215,596	+		EFB2_02064	0.35	+0.8
2,215,596	+		EFB2_02064	0.35	+0.0
2,215,596	+		EFB2_02064	0.35	+0.4
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