Strain Fitness in Escherichia fergusonii Becca around EFB2_02053

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,203,187	+		EFB2_02051	0.27	-0.5
2,203,187	+		EFB2_02051	0.27	+1.1
2,203,188	-		EFB2_02051	0.27	-0.6
2,203,188	-		EFB2_02051	0.27	-0.6
2,203,204	+		EFB2_02051	0.32	+1.7
2,203,204	+		EFB2_02051	0.32	+0.6
2,203,204	+		EFB2_02051	0.32	+0.3
2,203,205	-		EFB2_02051	0.32	-1.0
2,203,205	-		EFB2_02051	0.32	+1.2
2,203,205	-		EFB2_02051	0.32	-1.7
2,203,205	-		EFB2_02051	0.32	+2.1
2,203,205	-		EFB2_02051	0.32	-1.0
2,203,316	+		EFB2_02051	0.64	-0.2
2,203,403	+		EFB2_02051	0.89	+0.2
2,203,403	+		EFB2_02051	0.89	+1.5
2,203,403	+		EFB2_02051	0.89	-2.4
2,203,404	-		EFB2_02051	0.89	+0.1
2,203,404	-		EFB2_02051	0.89	+1.8
2,203,548	+		EFB2_02052	0.18	+0.7
2,203,548	+		EFB2_02052	0.18	-1.7
2,203,548	+		EFB2_02052	0.18	+0.3
2,203,548	+		EFB2_02052	0.18	+0.3
2,203,548	+		EFB2_02052	0.18	+1.4
2,203,548	+		EFB2_02052	0.18	+1.1
2,203,549	-		EFB2_02052	0.18	+2.2
2,203,549	-		EFB2_02052	0.18	+1.6
2,203,574	+		EFB2_02052	0.22	-0.3
2,203,574	+		EFB2_02052	0.22	-2.7
2,203,575	-		EFB2_02052	0.22	-1.5
2,203,576	+		EFB2_02052	0.23	-2.2
2,203,636	+		EFB2_02052	0.33	+1.1
2,203,637	-		EFB2_02052	0.33	+1.5
2,203,675	+		EFB2_02052	0.40	-0.4
2,203,675	+		EFB2_02052	0.40	-3.1
2,203,675	+		EFB2_02052	0.40	+0.8
2,203,676	-		EFB2_02052	0.40	+0.3
2,203,676	-		EFB2_02052	0.40	-1.3
2,203,676	-		EFB2_02052	0.40	-1.6
2,203,676	-		EFB2_02052	0.40	+1.3
2,203,711	+		EFB2_02052	0.46	+1.2
2,203,711	+		EFB2_02052	0.46	-2.5
2,203,711	+		EFB2_02052	0.46	+0.4
2,203,711	+		EFB2_02052	0.46	+0.5
2,203,711	+		EFB2_02052	0.46	-0.3
2,203,712	-		EFB2_02052	0.46	+2.4
2,203,712	-		EFB2_02052	0.46	+1.2
2,203,712	-		EFB2_02052	0.46	-0.7
2,203,712	-		EFB2_02052	0.46	+1.3
2,203,712	-		EFB2_02052	0.46	+0.6
2,203,712	-		EFB2_02052	0.46	-1.1
2,203,740	-		EFB2_02052	0.51	-2.7
2,203,746	+		EFB2_02052	0.52	+2.3
2,203,747	-		EFB2_02052	0.52	-0.7
2,203,747	-		EFB2_02052	0.52	-1.4
2,203,749	-		EFB2_02052	0.53	+0.9
2,203,836	+		EFB2_02052	0.68	+0.4
2,203,876	+		EFB2_02052	0.74	-0.0
2,203,876	+		EFB2_02052	0.74	-1.9
2,203,876	+		EFB2_02052	0.74	-2.2
2,203,876	+		EFB2_02052	0.74	+0.3
2,203,876	+		EFB2_02052	0.74	+0.1
2,203,879	+		EFB2_02052	0.75	-0.2
2,203,880	-		EFB2_02052	0.75	-1.7
2,203,920	+		EFB2_02052	0.82	-1.6
2,203,920	+		EFB2_02052	0.82	+0.8
2,203,920	+		EFB2_02052	0.82	+1.0
2,203,920	+		EFB2_02052	0.82	-1.6
2,203,920	+		EFB2_02052	0.82	+1.0
2,203,920	+		EFB2_02052	0.82	-1.4
2,203,920	+		EFB2_02052	0.82	+0.9
2,203,920	+		EFB2_02052	0.82	+1.0
2,203,920	+		EFB2_02052	0.82	+0.5
2,203,920	+		EFB2_02052	0.82	+1.9
2,203,920	+		EFB2_02052	0.82	-0.7
2,203,921	-		EFB2_02052	0.82	+0.8
2,203,921	-		EFB2_02052	0.82	+0.9
2,203,921	-		EFB2_02052	0.82	+2.2
2,203,921	-		EFB2_02052	0.82	+0.6
2,203,921	-		EFB2_02052	0.82	-2.1
2,203,921	-		EFB2_02052	0.82	-1.7
2,203,921	-		EFB2_02052	0.82	+0.1
2,203,921	-		EFB2_02052	0.82	+0.4
2,203,921	-		EFB2_02052	0.82	+2.4
2,203,954	+		EFB2_02052	0.88	-2.3
2,203,954	+		EFB2_02052	0.88	-1.9
2,203,954	+		EFB2_02052	0.88	+0.2
2,203,955	-		EFB2_02052	0.88	-2.1
2,203,978	+				+2.0
2,203,979	-				-2.1
2,203,981	+				+0.6
2,203,981	+				-0.4
2,204,010	+				-1.1
2,204,010	+				+0.3
2,204,010	+				-3.5
2,204,010	+				-2.5
2,204,010	+				-1.0
2,204,010	+				+1.5
2,204,010	+				+1.7
2,204,010	+				+0.9
2,204,011	-				+1.2
2,204,011	-				-1.5
2,204,011	-				-1.1
2,204,011	-				-2.3
2,204,021	+				-1.6
2,204,021	+				+0.7
2,204,022	-				-1.5
2,204,022	-				+0.8
2,204,029	-				+0.1
2,204,065	+				+0.3
2,204,065	+				+1.5
2,204,065	+				+2.0
2,204,065	+				+0.5
2,204,097	+				+2.0
2,204,155	+				-3.0
2,204,155	+				-1.3
2,204,155	+				+0.6
2,204,156	-				+4.2
2,204,156	-				+0.2
2,204,160	+				+0.1
2,204,160	+				-0.1
2,204,160	+				+3.4
2,204,160	+				+0.1
2,204,160	+				+0.2
2,204,160	+				-0.5
2,204,160	+				+0.5
2,204,161	-				+0.2
2,204,161	-				-0.8
2,204,161	-				+2.4
2,204,161	-				-0.6
2,204,161	-				+0.3
2,204,161	-				+0.3
2,204,161	-				+2.6
2,204,161	-				+0.9
2,204,161	-				-0.5
2,204,161	-				+0.7
2,204,161	-				-1.0
2,204,161	-				-0.6
2,204,163	+				-2.2
2,204,163	+				+0.3
2,204,163	+				+1.7
2,204,163	+				+1.0
2,204,163	+				-1.8
2,204,163	+				-0.4
2,204,164	-				-1.5
2,204,164	-				-1.0
2,204,164	-				+0.6
2,204,164	-				+0.1
2,204,164	-				+1.7
2,204,164	-				-3.4
2,204,168	+				+2.0
2,204,201	+				+0.6
2,204,202	-				+0.3
2,204,202	-				-1.1
2,204,234	+				+1.4
2,204,234	+				+0.9
2,204,234	+				-0.6
2,204,234	+				+1.4
2,204,234	+				-0.4
2,204,234	+				-0.3
2,204,234	+				-0.7
2,204,234	+				-1.3
2,204,234	+				+0.4
2,204,234	+				-2.3
2,204,234	+				-0.8
2,204,235	-				+0.1
2,204,235	-				+0.7
2,204,235	-				-1.3
2,204,235	-				+4.0
2,204,235	-				-1.3
2,204,235	-				+0.4
2,204,235	-				+1.6
2,204,257	+		EFB2_02053	0.12	+1.5
2,204,257	+		EFB2_02053	0.12	+0.2
2,204,257	+		EFB2_02053	0.12	+0.4
2,204,297	-		EFB2_02053	0.17	+1.4
2,204,357	+		EFB2_02053	0.23	+2.2
2,204,357	+		EFB2_02053	0.23	+0.1
2,204,358	-		EFB2_02053	0.23	+0.4
2,204,358	-		EFB2_02053	0.23	-0.6
2,204,358	-		EFB2_02053	0.23	+0.9
2,204,358	-		EFB2_02053	0.23	-2.0
2,204,358	-		EFB2_02053	0.23	+1.2
2,204,372	+		EFB2_02053	0.25	-0.8
2,204,372	+		EFB2_02053	0.25	-1.0
2,204,372	+		EFB2_02053	0.25	-0.4
2,204,372	+		EFB2_02053	0.25	+1.0
2,204,372	+		EFB2_02053	0.25	+0.9
2,204,372	+		EFB2_02053	0.25	+3.1
2,204,372	+		EFB2_02053	0.25	+1.2
2,204,372	+		EFB2_02053	0.25	-2.3
2,204,372	+		EFB2_02053	0.25	-2.3
2,204,372	+		EFB2_02053	0.25	+3.7
2,204,372	+		EFB2_02053	0.25	-0.2
2,204,372	+		EFB2_02053	0.25	+1.1
2,204,372	+		EFB2_02053	0.25	+1.4
2,204,372	+		EFB2_02053	0.25	-1.6
2,204,372	+		EFB2_02053	0.25	-0.6
2,204,372	+		EFB2_02053	0.25	-0.7
2,204,372	+		EFB2_02053	0.25	+0.4
2,204,372	+		EFB2_02053	0.25	+0.9
2,204,372	+		EFB2_02053	0.25	+1.2
2,204,372	+		EFB2_02053	0.25	+0.9
2,204,372	+		EFB2_02053	0.25	+1.4
2,204,372	+		EFB2_02053	0.25	-0.3
2,204,372	+		EFB2_02053	0.25	+2.1
2,204,372	+		EFB2_02053	0.25	-2.1
2,204,372	+		EFB2_02053	0.25	+1.9
2,204,372	+		EFB2_02053	0.25	-1.5
2,204,372	+		EFB2_02053	0.25	-1.9
2,204,373	-		EFB2_02053	0.25	-0.6
2,204,373	-		EFB2_02053	0.25	+1.7
2,204,373	-		EFB2_02053	0.25	+0.1
2,204,373	-		EFB2_02053	0.25	-2.0
2,204,373	-		EFB2_02053	0.25	-0.7
2,204,373	-		EFB2_02053	0.25	+1.0
2,204,373	-		EFB2_02053	0.25	-2.0
2,204,373	-		EFB2_02053	0.25	+0.6
2,204,373	-		EFB2_02053	0.25	-1.4
2,204,373	-		EFB2_02053	0.25	+0.3
2,204,373	-		EFB2_02053	0.25	-1.0
2,204,373	-		EFB2_02053	0.25	-1.0
2,204,373	-		EFB2_02053	0.25	+2.4
2,204,373	-		EFB2_02053	0.25	+0.4
2,204,373	-		EFB2_02053	0.25	-1.4
2,204,373	-		EFB2_02053	0.25	+1.2
2,204,373	-		EFB2_02053	0.25	-1.5
2,204,373	-		EFB2_02053	0.25	-0.7
2,204,373	-		EFB2_02053	0.25	-0.6
2,204,373	-		EFB2_02053	0.25	+2.6
2,204,373	-		EFB2_02053	0.25	+1.5
2,204,373	-		EFB2_02053	0.25	-0.7
2,204,373	-		EFB2_02053	0.25	-0.8
2,204,374	+		EFB2_02053	0.25	+0.6
2,204,374	+		EFB2_02053	0.25	-1.4
2,204,374	+		EFB2_02053	0.25	-2.1
2,204,374	+		EFB2_02053	0.25	-0.1
2,204,374	+		EFB2_02053	0.25	-2.4
2,204,374	+		EFB2_02053	0.25	-1.4
2,204,374	+		EFB2_02053	0.25	-0.1
2,204,374	+		EFB2_02053	0.25	-1.3
2,204,375	-		EFB2_02053	0.25	+2.2
2,204,375	-		EFB2_02053	0.25	+1.4
2,204,375	-		EFB2_02053	0.25	-1.0
2,204,375	-		EFB2_02053	0.25	-0.8
2,204,486	+		EFB2_02053	0.38	-1.5
2,204,525	-		EFB2_02053	0.42	+1.3
2,204,534	+		EFB2_02053	0.43	-1.9
2,204,535	-		EFB2_02053	0.43	-2.4
2,204,677	+		EFB2_02053	0.59	-1.5
2,204,677	+		EFB2_02053	0.59	-1.8
2,204,677	+		EFB2_02053	0.59	-0.2
2,204,678	-		EFB2_02053	0.59	-0.1
2,204,691	+		EFB2_02053	0.61	+1.4
2,204,692	-		EFB2_02053	0.61	+0.1
2,204,700	+		EFB2_02053	0.62	+0.9
2,204,701	-		EFB2_02053	0.62	+0.6
2,204,701	-		EFB2_02053	0.62	-0.0
2,204,701	-		EFB2_02053	0.62	-0.3
2,204,712	+		EFB2_02053	0.63	+2.6
2,204,713	-		EFB2_02053	0.63	-2.0
2,204,799	-		EFB2_02053	0.73	-0.0
2,204,830	-		EFB2_02053	0.77	+0.7
2,204,915	-		EFB2_02053	0.86	-3.3
2,204,915	-		EFB2_02053	0.86	+1.0
2,204,945	+		EFB2_02053	0.90	+2.2
2,204,945	+		EFB2_02053	0.90	-1.0
2,204,945	+		EFB2_02053	0.90	+1.6
2,204,946	-		EFB2_02053	0.90	+1.3
2,204,969	-				+0.6
2,205,121	+				+0.8
2,205,121	+				-1.3
2,205,121	+				-2.1
2,205,121	+				-1.6
2,205,122	-				-2.5
2,205,122	-				-1.4
2,205,122	-				+0.1
2,205,122	-				+3.2
2,205,132	+		EFB2_02054	0.11	+0.4
2,205,177	+		EFB2_02054	0.15	-0.7
2,205,177	+		EFB2_02054	0.15	+1.1
2,205,178	-		EFB2_02054	0.16	-0.6
2,205,214	+		EFB2_02054	0.19	+0.4
2,205,215	-		EFB2_02054	0.20	+1.2
2,205,215	-		EFB2_02054	0.20	+0.4
2,205,215	-		EFB2_02054	0.20	+2.9
2,205,215	-		EFB2_02054	0.20	+1.4
2,205,215	-		EFB2_02054	0.20	+0.2
2,205,264	+		EFB2_02054	0.25	+0.4
2,205,264	+		EFB2_02054	0.25	-1.8
2,205,265	-		EFB2_02054	0.25	+1.6
2,205,267	+		EFB2_02054	0.25	+0.5
2,205,301	+		EFB2_02054	0.29	+0.6
2,205,301	+		EFB2_02054	0.29	-1.4
2,205,301	+		EFB2_02054	0.29	-1.1
2,205,301	+		EFB2_02054	0.29	-1.3
2,205,301	+		EFB2_02054	0.29	+0.5
2,205,301	+		EFB2_02054	0.29	+0.6
2,205,301	+		EFB2_02054	0.29	+0.9
2,205,301	+		EFB2_02054	0.29	+1.2
2,205,301	+		EFB2_02054	0.29	-0.3
2,205,301	+		EFB2_02054	0.29	+0.4
2,205,301	+		EFB2_02054	0.29	-0.6
2,205,301	+		EFB2_02054	0.29	-0.1
2,205,301	+		EFB2_02054	0.29	+0.9
2,205,301	+		EFB2_02054	0.29	-2.0
2,205,301	+		EFB2_02054	0.29	-0.1
2,205,302	-		EFB2_02054	0.29	-1.3
2,205,302	-		EFB2_02054	0.29	-0.4
2,205,302	-		EFB2_02054	0.29	+1.8
2,205,302	-		EFB2_02054	0.29	+2.4
2,205,302	-		EFB2_02054	0.29	+0.9
2,205,302	-		EFB2_02054	0.29	-1.3
2,205,327	+		EFB2_02054	0.32	-0.7
2,205,327	+		EFB2_02054	0.32	+0.5
2,205,328	-		EFB2_02054	0.32	+1.4
2,205,328	-		EFB2_02054	0.32	-2.1
2,205,437	+		EFB2_02054	0.43	+2.2
2,205,438	-		EFB2_02054	0.44	+0.1
2,205,438	-		EFB2_02054	0.44	-0.5
2,205,438	-		EFB2_02054	0.44	-1.0
2,205,476	+		EFB2_02054	0.48	+0.2
2,205,476	+		EFB2_02054	0.48	+0.5
2,205,476	+		EFB2_02054	0.48	+2.0
2,205,476	+		EFB2_02054	0.48	+1.5
2,205,476	+		EFB2_02054	0.48	+0.5
2,205,476	+		EFB2_02054	0.48	-3.3
2,205,476	+		EFB2_02054	0.48	-0.2
2,205,476	+		EFB2_02054	0.48	+0.4
2,205,476	+		EFB2_02054	0.48	-1.3
2,205,476	+		EFB2_02054	0.48	+0.1
2,205,477	-		EFB2_02054	0.48	+2.2
2,205,477	-		EFB2_02054	0.48	-1.5
2,205,477	-		EFB2_02054	0.48	-1.1
2,205,477	-		EFB2_02054	0.48	+1.7
2,205,477	-		EFB2_02054	0.48	+1.7
2,205,477	-		EFB2_02054	0.48	+0.1
2,205,477	-		EFB2_02054	0.48	-0.7
2,205,480	+		EFB2_02054	0.48	-1.3
2,205,480	+		EFB2_02054	0.48	-2.7
2,205,480	+		EFB2_02054	0.48	+2.8
2,205,480	+		EFB2_02054	0.48	+0.7
2,205,480	+		EFB2_02054	0.48	+0.4
2,205,480	+		EFB2_02054	0.48	+0.3
2,205,480	+		EFB2_02054	0.48	+1.4
2,205,480	+		EFB2_02054	0.48	-1.4
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