Strain Fitness in Escherichia fergusonii Becca around EFB2_01909

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,031,171	-		EFB2_01907	0.17	+0.7
2,031,172	+		EFB2_01907	0.17	-0.5
2,031,173	-		EFB2_01907	0.17	+0.8
2,031,191	-		EFB2_01907	0.19	+1.2
2,031,205	+		EFB2_01907	0.21	+1.3
2,031,206	-		EFB2_01907	0.21	-1.0
2,031,206	-		EFB2_01907	0.21	-0.1
2,031,206	-		EFB2_01907	0.21	+0.1
2,031,206	-		EFB2_01907	0.21	+1.1
2,031,220	-		EFB2_01907	0.23	-1.0
2,031,220	-		EFB2_01907	0.23	-2.3
2,031,261	+		EFB2_01907	0.27	+0.3
2,031,261	+		EFB2_01907	0.27	-1.8
2,031,261	+		EFB2_01907	0.27	+4.2
2,031,261	+		EFB2_01907	0.27	+1.0
2,031,261	+		EFB2_01907	0.27	-1.3
2,031,261	+		EFB2_01907	0.27	+2.7
2,031,261	+		EFB2_01907	0.27	-1.9
2,031,261	+		EFB2_01907	0.27	-2.6
2,031,261	+		EFB2_01907	0.27	+0.6
2,031,262	-		EFB2_01907	0.28	+2.2
2,031,262	-		EFB2_01907	0.28	+1.3
2,031,262	-		EFB2_01907	0.28	-0.0
2,031,262	-		EFB2_01907	0.28	-2.1
2,031,262	-		EFB2_01907	0.28	+1.0
2,031,262	-		EFB2_01907	0.28	-0.1
2,031,262	-		EFB2_01907	0.28	-0.0
2,031,262	-		EFB2_01907	0.28	+4.3
2,031,286	+		EFB2_01907	0.30	-0.7
2,031,286	+		EFB2_01907	0.30	-2.9
2,031,287	-		EFB2_01907	0.30	+0.2
2,031,289	+		EFB2_01907	0.31	+1.3
2,031,289	+		EFB2_01907	0.31	+0.5
2,031,300	+		EFB2_01907	0.32	+0.7
2,031,301	-		EFB2_01907	0.32	+0.2
2,031,301	-		EFB2_01907	0.32	-1.1
2,031,318	+		EFB2_01907	0.34	+0.8
2,031,318	+		EFB2_01907	0.34	-0.9
2,031,318	+		EFB2_01907	0.34	+0.8
2,031,318	+		EFB2_01907	0.34	+1.7
2,031,318	+		EFB2_01907	0.34	-0.5
2,031,318	+		EFB2_01907	0.34	+0.2
2,031,318	+		EFB2_01907	0.34	+0.4
2,031,319	-		EFB2_01907	0.34	+0.3
2,031,319	-		EFB2_01907	0.34	-0.7
2,031,320	+		EFB2_01907	0.34	-1.1
2,031,320	+		EFB2_01907	0.34	-0.3
2,031,320	+		EFB2_01907	0.34	+1.7
2,031,320	+		EFB2_01907	0.34	+2.2
2,031,321	-		EFB2_01907	0.34	+2.3
2,031,321	-		EFB2_01907	0.34	-1.7
2,031,321	-		EFB2_01907	0.34	+1.3
2,031,321	-		EFB2_01907	0.34	+0.3
2,031,321	-		EFB2_01907	0.34	+1.0
2,031,321	-		EFB2_01907	0.34	-0.3
2,031,368	-		EFB2_01907	0.40	-0.7
2,031,368	-		EFB2_01907	0.40	-2.5
2,031,370	+		EFB2_01907	0.40	+1.3
2,031,370	+		EFB2_01907	0.40	-3.0
2,031,370	+		EFB2_01907	0.40	-1.4
2,031,370	+		EFB2_01907	0.40	+0.3
2,031,370	+		EFB2_01907	0.40	+2.3
2,031,370	+		EFB2_01907	0.40	+1.1
2,031,370	+		EFB2_01907	0.40	-1.1
2,031,370	+		EFB2_01907	0.40	+0.5
2,031,371	-		EFB2_01907	0.40	-0.3
2,031,371	-		EFB2_01907	0.40	+1.7
2,031,371	-		EFB2_01907	0.40	-1.5
2,031,381	+		EFB2_01907	0.41	+0.4
2,031,381	+		EFB2_01907	0.41	+0.3
2,031,382	-		EFB2_01907	0.41	-1.3
2,031,382	-		EFB2_01907	0.41	-2.3
2,031,382	-		EFB2_01907	0.41	-3.7
2,031,382	-		EFB2_01907	0.41	+0.7
2,031,385	+		EFB2_01907	0.42	-1.4
2,031,385	+		EFB2_01907	0.42	-3.9
2,031,385	+		EFB2_01907	0.42	-1.9
2,031,386	-		EFB2_01907	0.42	-0.0
2,031,386	-		EFB2_01907	0.42	+1.0
2,031,386	-		EFB2_01907	0.42	+0.7
2,031,386	-		EFB2_01907	0.42	-1.5
2,031,386	-		EFB2_01907	0.42	-2.3
2,031,386	-		EFB2_01907	0.42	-0.6
2,031,406	-		EFB2_01907	0.44	+3.2
2,031,442	+		EFB2_01907	0.48	-2.7
2,031,442	+		EFB2_01907	0.48	+1.6
2,031,489	+		EFB2_01907	0.54	-1.4
2,031,489	+		EFB2_01907	0.54	-1.6
2,031,489	+		EFB2_01907	0.54	-0.0
2,031,489	+		EFB2_01907	0.54	-0.5
2,031,489	+		EFB2_01907	0.54	-0.5
2,031,489	+		EFB2_01907	0.54	-2.4
2,031,489	+		EFB2_01907	0.54	+0.1
2,031,489	+		EFB2_01907	0.54	-1.8
2,031,489	+		EFB2_01907	0.54	-0.8
2,031,490	-		EFB2_01907	0.54	-0.7
2,031,490	-		EFB2_01907	0.54	-1.1
2,031,490	-		EFB2_01907	0.54	+1.7
2,031,490	-		EFB2_01907	0.54	+3.5
2,031,490	-		EFB2_01907	0.54	-1.4
2,031,490	-		EFB2_01907	0.54	-0.7
2,031,493	+		EFB2_01907	0.54	-2.1
2,031,493	+		EFB2_01907	0.54	-1.1
2,031,493	+		EFB2_01907	0.54	+1.5
2,031,493	+		EFB2_01907	0.54	-0.5
2,031,493	+		EFB2_01907	0.54	-1.4
2,031,493	+		EFB2_01907	0.54	+1.0
2,031,493	+		EFB2_01907	0.54	+2.2
2,031,494	-		EFB2_01907	0.54	+1.1
2,031,494	-		EFB2_01907	0.54	+0.6
2,031,494	-		EFB2_01907	0.54	-3.5
2,031,494	-		EFB2_01907	0.54	+2.1
2,031,494	-		EFB2_01907	0.54	-2.4
2,031,494	-		EFB2_01907	0.54	+0.5
2,031,494	-		EFB2_01907	0.54	+0.2
2,031,494	-		EFB2_01907	0.54	-0.0
2,031,494	-		EFB2_01907	0.54	-1.0
2,031,505	+		EFB2_01907	0.56	-0.5
2,031,505	+		EFB2_01907	0.56	+0.9
2,031,505	+		EFB2_01907	0.56	-0.4
2,031,505	+		EFB2_01907	0.56	+2.6
2,031,505	+		EFB2_01907	0.56	+0.3
2,031,506	-		EFB2_01907	0.56	+0.6
2,031,506	-		EFB2_01907	0.56	+2.7
2,031,506	-		EFB2_01907	0.56	-1.1
2,031,516	+		EFB2_01907	0.57	-0.7
2,031,516	+		EFB2_01907	0.57	+0.1
2,031,516	+		EFB2_01907	0.57	+1.3
2,031,516	+		EFB2_01907	0.57	+0.9
2,031,516	+		EFB2_01907	0.57	+0.8
2,031,517	-		EFB2_01907	0.57	+1.0
2,031,517	-		EFB2_01907	0.57	+2.1
2,031,517	-		EFB2_01907	0.57	+1.6
2,031,517	-		EFB2_01907	0.57	-0.0
2,031,517	-		EFB2_01907	0.57	-1.5
2,031,528	+		EFB2_01907	0.58	-0.1
2,031,528	+		EFB2_01907	0.58	+1.0
2,031,528	+		EFB2_01907	0.58	-2.3
2,031,528	+		EFB2_01907	0.58	-2.1
2,031,529	-		EFB2_01907	0.58	-1.1
2,031,529	-		EFB2_01907	0.58	+1.3
2,031,544	+		EFB2_01907	0.60	+1.3
2,031,545	-		EFB2_01907	0.60	+0.6
2,031,621	+		EFB2_01907	0.69	+1.9
2,031,621	+		EFB2_01907	0.69	+0.8
2,031,621	+		EFB2_01907	0.69	-1.0
2,031,621	+		EFB2_01907	0.69	+1.4
2,031,622	-		EFB2_01907	0.69	+1.7
2,031,622	-		EFB2_01907	0.69	-1.4
2,031,625	+		EFB2_01907	0.69	+4.1
2,031,625	+		EFB2_01907	0.69	+1.7
2,031,625	+		EFB2_01907	0.69	-0.2
2,031,625	+		EFB2_01907	0.69	+1.0
2,031,625	+		EFB2_01907	0.69	-0.0
2,031,625	+		EFB2_01907	0.69	-0.4
2,031,625	+		EFB2_01907	0.69	+2.5
2,031,625	+		EFB2_01907	0.69	+0.5
2,031,626	-		EFB2_01907	0.70	-1.0
2,031,626	-		EFB2_01907	0.70	-2.0
2,031,626	-		EFB2_01907	0.70	+0.7
2,031,626	-		EFB2_01907	0.70	-1.7
2,031,626	-		EFB2_01907	0.70	+1.4
2,031,626	-		EFB2_01907	0.70	+0.8
2,031,626	-		EFB2_01907	0.70	-3.4
2,031,626	-		EFB2_01907	0.70	+0.2
2,031,664	+		EFB2_01907	0.74	-1.3
2,031,664	+		EFB2_01907	0.74	-1.6
2,031,664	+		EFB2_01907	0.74	+0.4
2,031,664	+		EFB2_01907	0.74	+2.0
2,031,664	+		EFB2_01907	0.74	+2.6
2,031,664	+		EFB2_01907	0.74	+0.4
2,031,664	+		EFB2_01907	0.74	-1.7
2,031,664	+		EFB2_01907	0.74	-0.0
2,031,664	+		EFB2_01907	0.74	+0.7
2,031,665	-		EFB2_01907	0.74	-2.2
2,031,665	-		EFB2_01907	0.74	-0.9
2,031,665	-		EFB2_01907	0.74	+2.3
2,031,665	-		EFB2_01907	0.74	-1.1
2,031,665	-		EFB2_01907	0.74	-0.9
2,031,673	+		EFB2_01907	0.75	+0.3
2,031,673	+		EFB2_01907	0.75	-0.2
2,031,673	+		EFB2_01907	0.75	-1.1
2,031,706	-		EFB2_01907	0.79	-1.5
2,031,759	+		EFB2_01907	0.85	-0.0
2,031,759	+		EFB2_01907	0.85	+0.7
2,031,759	+		EFB2_01907	0.85	-0.3
2,031,759	+		EFB2_01907	0.85	+0.2
2,031,759	+		EFB2_01907	0.85	-1.1
2,031,759	+		EFB2_01907	0.85	-0.9
2,031,759	+		EFB2_01907	0.85	+0.8
2,031,759	+		EFB2_01907	0.85	+1.0
2,031,759	+		EFB2_01907	0.85	+0.2
2,031,759	+		EFB2_01907	0.85	+2.1
2,031,759	+		EFB2_01907	0.85	-3.0
2,031,759	+		EFB2_01907	0.85	+0.5
2,031,759	+		EFB2_01907	0.85	+0.4
2,031,760	-		EFB2_01907	0.85	+0.7
2,031,760	-		EFB2_01907	0.85	-0.6
2,031,760	-		EFB2_01907	0.85	+1.2
2,031,760	-		EFB2_01907	0.85	-0.3
2,031,760	-		EFB2_01907	0.85	-0.5
2,031,760	-		EFB2_01907	0.85	-0.0
2,031,760	-		EFB2_01907	0.85	+0.9
2,031,760	-		EFB2_01907	0.85	+0.7
2,031,760	-		EFB2_01907	0.85	-1.7
2,031,760	-		EFB2_01907	0.85	-1.6
2,031,760	-		EFB2_01907	0.85	+0.4
2,031,760	-		EFB2_01907	0.85	-0.2
2,031,760	-		EFB2_01907	0.85	+2.3
2,031,760	-		EFB2_01907	0.85	+2.3
2,031,761	+		EFB2_01907	0.85	+0.8
2,031,761	+		EFB2_01907	0.85	-1.5
2,031,762	-		EFB2_01907	0.85	+1.1
2,031,772	+		EFB2_01907	0.86	+1.1
2,031,772	+		EFB2_01907	0.86	+1.9
2,031,773	-		EFB2_01907	0.87	+2.0
2,031,773	-		EFB2_01907	0.87	-0.7
2,031,773	-		EFB2_01907	0.87	+0.2
2,031,781	+		EFB2_01907	0.87	-0.6
2,031,781	+		EFB2_01907	0.87	+3.5
2,031,781	+		EFB2_01907	0.87	+0.9
2,031,781	+		EFB2_01907	0.87	+0.8
2,031,781	+		EFB2_01907	0.87	+0.4
2,031,781	+		EFB2_01907	0.87	-0.2
2,031,782	-		EFB2_01907	0.88	-0.9
2,031,782	-		EFB2_01907	0.88	+0.6
2,031,782	-		EFB2_01907	0.88	-2.0
2,031,782	-		EFB2_01907	0.88	+2.7
2,031,782	-		EFB2_01907	0.88	+1.3
2,031,782	-		EFB2_01907	0.88	-1.0
2,031,782	-		EFB2_01907	0.88	-1.3
2,031,785	+		EFB2_01907	0.88	-0.0
2,031,786	-		EFB2_01907	0.88	+1.3
2,031,786	-		EFB2_01907	0.88	-1.1
2,031,786	-		EFB2_01907	0.88	-0.6
2,031,786	-		EFB2_01907	0.88	+2.8
2,031,801	+		EFB2_01907	0.90	+0.6
2,031,827	+				-0.3
2,031,827	+				-1.3
2,031,828	-				-2.5
2,031,863	+				+1.1
2,031,875	+				-1.1
2,031,875	+				+1.2
2,031,875	+				-2.9
2,031,875	+				-0.5
2,031,875	+				-0.1
2,031,912	+				+1.6
2,031,912	+				-1.1
2,031,912	+				+0.1
2,031,912	+				-0.8
2,031,913	-				-0.9
2,031,919	-				+1.0
2,031,933	+				-0.0
2,031,934	-				+1.3
2,031,971	+		EFB2_01908	0.21	-0.3
2,031,971	+		EFB2_01908	0.21	-2.5
2,031,971	+		EFB2_01908	0.21	-0.0
2,031,972	-		EFB2_01908	0.21	+2.2
2,031,981	+		EFB2_01908	0.25	+1.1
2,031,981	+		EFB2_01908	0.25	-0.9
2,031,981	+		EFB2_01908	0.25	-2.9
2,031,981	+		EFB2_01908	0.25	-0.4
2,031,981	+		EFB2_01908	0.25	+1.7
2,031,982	-		EFB2_01908	0.25	+2.5
2,031,982	-		EFB2_01908	0.25	-0.0
2,031,982	-		EFB2_01908	0.25	+2.5
2,031,982	-		EFB2_01908	0.25	+1.6
2,031,982	-		EFB2_01908	0.25	+0.9
2,032,035	+		EFB2_01908	0.47	-1.0
2,032,035	+		EFB2_01908	0.47	+0.6
2,032,035	+		EFB2_01908	0.47	-2.6
2,032,036	-		EFB2_01908	0.47	-1.9
2,032,036	-		EFB2_01908	0.47	+2.3
2,032,036	-		EFB2_01908	0.47	-2.7
2,032,049	+		EFB2_01908	0.52	-0.4
2,032,056	+		EFB2_01908	0.55	-0.7
2,032,056	+		EFB2_01908	0.55	+0.3
2,032,056	+		EFB2_01908	0.55	+1.1
2,032,056	+		EFB2_01908	0.55	+0.7
2,032,058	+		EFB2_01908	0.56	+0.9
2,032,130	+		EFB2_01908	0.85	-1.5
2,032,165	+				-2.4
2,032,165	+				-0.3
2,032,170	+				-1.0
2,032,170	+				+4.6
2,032,171	-				-0.7
2,032,171	-				+1.3
2,032,171	-				-1.9
2,032,171	-				+0.7
2,032,251	+				-2.3
2,032,269	+				+0.4
2,032,269	+				-2.0
2,032,269	+				-2.3
2,032,269	+				+0.5
2,032,269	+				-0.5
2,032,269	+				-1.0
2,032,270	-				-1.3
2,032,284	+		EFB2_01909	0.10	+0.2
2,032,284	+		EFB2_01909	0.10	-0.5
2,032,284	+		EFB2_01909	0.10	+0.7
2,032,284	+		EFB2_01909	0.10	+0.3
2,032,285	-		EFB2_01909	0.10	-0.2
2,032,285	-		EFB2_01909	0.10	-1.1
2,032,285	-		EFB2_01909	0.10	-0.7
2,032,285	-		EFB2_01909	0.10	+0.7
2,032,309	+		EFB2_01909	0.12	+1.3
2,032,313	+		EFB2_01909	0.13	+0.7
2,032,313	+		EFB2_01909	0.13	+0.8
2,032,313	+		EFB2_01909	0.13	+0.1
2,032,313	+		EFB2_01909	0.13	-3.1
2,032,313	+		EFB2_01909	0.13	-2.2
2,032,313	+		EFB2_01909	0.13	+3.3
2,032,313	+		EFB2_01909	0.13	+0.4
2,032,313	+		EFB2_01909	0.13	+0.0
2,032,313	+		EFB2_01909	0.13	+0.4
2,032,313	+		EFB2_01909	0.13	+0.3
2,032,313	+		EFB2_01909	0.13	-0.3
2,032,313	+		EFB2_01909	0.13	+2.0
2,032,313	+		EFB2_01909	0.13	+0.7
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