Strain Fitness in Escherichia fergusonii Becca around EFB2_01400

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,464,607	+		EFB2_01399	0.38	+2.1
1,464,607	+		EFB2_01399	0.38	-1.1
1,464,607	+		EFB2_01399	0.38	+0.7
1,464,607	+		EFB2_01399	0.38	-2.1
1,464,607	+		EFB2_01399	0.38	-2.1
1,464,607	+		EFB2_01399	0.38	+1.6
1,464,607	+		EFB2_01399	0.38	+0.8
1,464,608	-		EFB2_01399	0.38	+0.6
1,464,608	-		EFB2_01399	0.38	-2.2
1,464,608	-		EFB2_01399	0.38	+0.1
1,464,733	+		EFB2_01399	0.50	+0.6
1,464,733	+		EFB2_01399	0.50	-0.3
1,464,733	+		EFB2_01399	0.50	-0.1
1,464,733	+		EFB2_01399	0.50	+0.8
1,464,734	-		EFB2_01399	0.50	-0.5
1,464,734	-		EFB2_01399	0.50	+0.8
1,464,734	-		EFB2_01399	0.50	-1.9
1,464,761	+		EFB2_01399	0.53	-1.7
1,464,792	+		EFB2_01399	0.56	-2.5
1,464,792	+		EFB2_01399	0.56	+0.7
1,464,792	+		EFB2_01399	0.56	+1.4
1,464,793	-		EFB2_01399	0.56	-1.6
1,464,793	-		EFB2_01399	0.56	+1.6
1,464,807	+		EFB2_01399	0.57	+2.0
1,464,807	+		EFB2_01399	0.57	+0.9
1,464,807	+		EFB2_01399	0.57	-2.0
1,464,807	+		EFB2_01399	0.57	-0.7
1,464,807	+		EFB2_01399	0.57	-0.9
1,464,807	+		EFB2_01399	0.57	-0.7
1,464,807	+		EFB2_01399	0.57	+1.6
1,464,807	+		EFB2_01399	0.57	-0.9
1,464,807	+		EFB2_01399	0.57	-2.1
1,464,807	+		EFB2_01399	0.57	+1.6
1,464,807	+		EFB2_01399	0.57	+0.2
1,464,807	+		EFB2_01399	0.57	-0.7
1,464,807	+		EFB2_01399	0.57	-0.1
1,464,807	+		EFB2_01399	0.57	-2.8
1,464,808	-		EFB2_01399	0.57	+0.0
1,464,808	-		EFB2_01399	0.57	-0.3
1,464,808	-		EFB2_01399	0.57	-0.6
1,464,808	-		EFB2_01399	0.57	-1.4
1,464,808	-		EFB2_01399	0.57	-0.5
1,464,808	-		EFB2_01399	0.57	-1.4
1,464,808	-		EFB2_01399	0.57	-1.1
1,464,808	-		EFB2_01399	0.57	+0.9
1,464,808	-		EFB2_01399	0.57	+0.5
1,464,808	-		EFB2_01399	0.57	-1.5
1,464,808	-		EFB2_01399	0.57	-0.2
1,464,808	-		EFB2_01399	0.57	-1.5
1,464,808	-		EFB2_01399	0.57	+0.2
1,464,808	-		EFB2_01399	0.57	-0.3
1,464,927	+		EFB2_01399	0.69	+0.7
1,464,928	-		EFB2_01399	0.69	-1.9
1,464,930	+		EFB2_01399	0.69	+2.4
1,464,930	+		EFB2_01399	0.69	+0.6
1,464,930	+		EFB2_01399	0.69	+1.0
1,464,931	-		EFB2_01399	0.69	+0.2
1,464,931	-		EFB2_01399	0.69	+0.4
1,464,931	-		EFB2_01399	0.69	+2.6
1,465,000	+		EFB2_01399	0.76	-0.2
1,465,000	+		EFB2_01399	0.76	+1.2
1,465,023	-		EFB2_01399	0.78	+0.2
1,465,023	-		EFB2_01399	0.78	+0.3
1,465,023	-		EFB2_01399	0.78	-0.9
1,465,023	-		EFB2_01399	0.78	-2.8
1,465,048	+		EFB2_01399	0.80	-0.4
1,465,048	+		EFB2_01399	0.80	-1.6
1,465,048	+		EFB2_01399	0.80	+0.6
1,465,048	+		EFB2_01399	0.80	-2.0
1,465,049	-		EFB2_01399	0.80	-0.9
1,465,049	-		EFB2_01399	0.80	-0.4
1,465,052	+		EFB2_01399	0.81	+1.8
1,465,052	+		EFB2_01399	0.81	-1.0
1,465,052	+		EFB2_01399	0.81	+1.9
1,465,052	+		EFB2_01399	0.81	+0.0
1,465,052	+		EFB2_01399	0.81	-1.9
1,465,052	+		EFB2_01399	0.81	-1.0
1,465,053	-		EFB2_01399	0.81	-1.2
1,465,053	-		EFB2_01399	0.81	-2.5
1,465,053	-		EFB2_01399	0.81	-0.3
1,465,166	+				+0.2
1,465,166	+				+0.4
1,465,166	+				-0.2
1,465,167	-				-0.8
1,465,207	+				+0.5
1,465,208	-				-1.8
1,465,208	-				-0.7
1,465,227	+				+1.2
1,465,227	+				+1.9
1,465,227	+				-2.0
1,465,227	+				-0.9
1,465,227	+				-1.1
1,465,228	-				-2.5
1,465,228	-				+1.2
1,465,228	-				+2.0
1,465,228	-				+1.0
1,465,231	+				-0.2
1,465,231	+				-0.1
1,465,231	+				-2.4
1,465,231	+				+2.0
1,465,231	+				-0.6
1,465,231	+				+0.3
1,465,231	+				+0.6
1,465,231	+				+0.8
1,465,232	-				+1.8
1,465,232	-				+2.1
1,465,232	-				+0.9
1,465,232	-				+0.2
1,465,232	-				-0.2
1,465,232	-				-3.0
1,465,232	-				+1.4
1,465,232	-				+1.3
1,465,232	-				-0.5
1,465,272	+				+0.3
1,465,307	+				-1.0
1,465,307	+				-0.9
1,465,340	+				-1.5
1,465,340	+				-2.2
1,465,387	+				-0.6
1,465,388	-				-0.8
1,465,393	+				+0.1
1,465,393	+				-0.1
1,465,393	+				-3.2
1,465,393	+				-0.8
1,465,393	+				-0.6
1,465,393	+				-0.4
1,465,393	+				+0.1
1,465,393	+				-1.0
1,465,393	+				-3.4
1,465,393	+				+0.6
1,465,394	-				+0.1
1,465,394	-				-2.5
1,465,394	-				-2.2
1,465,451	+				-1.5
1,465,457	-				+0.2
1,465,487	+				-0.8
1,465,503	-				-1.9
1,465,529	+				+0.6
1,465,529	+				+2.4
1,465,529	+				+0.6
1,465,529	+				+1.6
1,465,529	+				+0.6
1,465,530	-				-0.9
1,465,530	-				-2.5
1,465,530	-				-1.8
1,465,530	-				-1.9
1,465,530	-				-2.7
1,465,531	+				-1.2
1,465,531	+				-0.2
1,465,532	-				+0.7
1,465,576	+				-1.0
1,465,576	+				-1.2
1,465,577	-				-0.8
1,465,642	+		EFB2_01400	0.10	-0.0
1,465,642	+		EFB2_01400	0.10	+0.7
1,465,642	+		EFB2_01400	0.10	-1.5
1,465,684	+		EFB2_01400	0.17	+0.7
1,465,697	+		EFB2_01400	0.19	-1.9
1,465,697	+		EFB2_01400	0.19	-0.1
1,465,697	+		EFB2_01400	0.19	+1.2
1,465,697	+		EFB2_01400	0.19	-1.3
1,465,697	+		EFB2_01400	0.19	-2.4
1,465,697	+		EFB2_01400	0.19	-2.4
1,465,698	-		EFB2_01400	0.19	+1.5
1,465,698	-		EFB2_01400	0.19	+0.7
1,465,698	-		EFB2_01400	0.19	-1.5
1,465,698	-		EFB2_01400	0.19	-0.8
1,465,731	+		EFB2_01400	0.25	-2.3
1,465,731	+		EFB2_01400	0.25	+0.2
1,465,731	+		EFB2_01400	0.25	-2.6
1,465,731	+		EFB2_01400	0.25	-0.4
1,465,735	+		EFB2_01400	0.25	+0.1
1,465,736	-		EFB2_01400	0.25	-1.3
1,465,876	+		EFB2_01400	0.48	+0.6
1,465,876	+		EFB2_01400	0.48	+1.3
1,465,876	+		EFB2_01400	0.48	-4.5
1,465,876	+		EFB2_01400	0.48	+0.7
1,465,876	+		EFB2_01400	0.48	-1.5
1,465,877	-		EFB2_01400	0.48	-1.4
1,465,877	-		EFB2_01400	0.48	+1.7
1,465,877	-		EFB2_01400	0.48	+0.2
1,465,877	-		EFB2_01400	0.48	+0.6
1,465,877	-		EFB2_01400	0.48	-0.1
1,465,880	+		EFB2_01400	0.48	-3.5
1,465,880	+		EFB2_01400	0.48	+1.6
1,465,880	+		EFB2_01400	0.48	+1.9
1,465,880	+		EFB2_01400	0.48	-0.7
1,465,880	+		EFB2_01400	0.48	+1.0
1,465,880	+		EFB2_01400	0.48	-2.0
1,465,880	+		EFB2_01400	0.48	-1.4
1,465,880	+		EFB2_01400	0.48	-1.0
1,465,880	+		EFB2_01400	0.48	-0.1
1,465,880	+		EFB2_01400	0.48	-0.1
1,465,881	-		EFB2_01400	0.48	-0.9
1,465,881	-		EFB2_01400	0.48	+1.5
1,465,881	-		EFB2_01400	0.48	-1.0
1,465,881	-		EFB2_01400	0.48	-1.6
1,465,881	-		EFB2_01400	0.48	-0.1
1,465,881	-		EFB2_01400	0.48	-0.8
1,465,881	-		EFB2_01400	0.48	+0.2
1,465,886	-		EFB2_01400	0.49	+0.7
1,465,886	-		EFB2_01400	0.49	+1.5
1,465,913	+		EFB2_01400	0.54	-3.7
1,465,913	+		EFB2_01400	0.54	-0.2
1,465,913	+		EFB2_01400	0.54	+1.6
1,465,914	-		EFB2_01400	0.54	-2.7
1,465,933	+		EFB2_01400	0.57	+1.1
1,465,948	+		EFB2_01400	0.59	-2.6
1,465,948	+		EFB2_01400	0.59	+0.5
1,465,949	-		EFB2_01400	0.59	+3.2
1,465,949	-		EFB2_01400	0.59	-2.3
1,466,049	+		EFB2_01400	0.75	+1.2
1,466,049	+		EFB2_01400	0.75	-3.4
1,466,050	-		EFB2_01400	0.75	+2.6
1,466,050	-		EFB2_01400	0.75	-0.9
1,466,071	+		EFB2_01400	0.79	-1.9
1,466,111	+		EFB2_01400	0.85	+1.2
1,466,111	+		EFB2_01400	0.85	+0.0
1,466,111	+		EFB2_01400	0.85	-1.9
1,466,111	+		EFB2_01400	0.85	+0.9
1,466,111	+		EFB2_01400	0.85	+0.0
1,466,111	+		EFB2_01400	0.85	+1.0
1,466,111	+		EFB2_01400	0.85	+2.2
1,466,111	+		EFB2_01400	0.85	-0.4
1,466,111	+		EFB2_01400	0.85	+0.4
1,466,112	-		EFB2_01400	0.85	+3.8
1,466,112	-		EFB2_01400	0.85	-1.6
1,466,112	-		EFB2_01400	0.85	-0.7
1,466,112	-		EFB2_01400	0.85	-1.9
1,466,112	-		EFB2_01400	0.85	+2.9
1,466,113	+		EFB2_01400	0.85	-1.0
1,466,150	+				-2.0
1,466,150	+				-1.1
1,466,150	+				+0.9
1,466,150	+				-1.7
1,466,150	+				-0.1
1,466,150	+				+1.0
1,466,151	-				+1.7
1,466,151	-				+0.2
1,466,151	-				+1.2
1,466,151	-				-0.9
1,466,151	-				-0.8
1,466,155	+				-0.6
1,466,155	+				-0.8
1,466,155	+				-0.6
1,466,155	+				-1.2
1,466,155	+				+0.8
1,466,155	+				-0.0
1,466,201	+				-1.0
1,466,201	+				+0.1
1,466,201	+				+0.2
1,466,208	+				-2.2
1,466,209	-				+2.2
1,466,209	-				+2.9
1,466,218	+				+0.6
1,466,218	+				+1.5
1,466,219	-				-2.6
1,466,230	+				-1.2
1,466,230	+				+0.4
1,466,230	+				+1.5
1,466,230	+				+0.4
1,466,231	-				+0.5
1,466,231	-				+1.1
1,466,231	-				-0.1
1,466,253	-				+0.9
1,466,253	-				+0.8
1,466,253	-				-1.0
1,466,262	-				-0.1
1,466,262	-				-2.4
1,466,262	-				+0.0
1,466,262	-				+0.2
1,466,262	-				-1.1
1,466,262	-				+0.3
1,466,262	-				+1.6
1,466,263	+				+0.6
1,466,263	+				-2.2
1,466,263	+				+0.1
1,466,263	+				+0.6
1,466,263	+				+1.3
1,466,263	+				-1.1
1,466,263	+				-1.6
1,466,263	+				-1.4
1,466,263	+				+0.7
1,466,263	+				+1.7
1,466,263	+				+1.0
1,466,264	-				+0.5
1,466,264	-				-1.0
1,466,264	-				-0.4
1,466,264	-				-1.6
1,466,264	-				+0.6
1,466,264	-				-0.4
1,466,264	-				+1.0
1,466,270	+				-1.3
1,466,270	+				-1.3
1,466,270	+				-0.8
1,466,270	+				-0.9
1,466,270	+				+0.0
1,466,270	+				-2.9
1,466,270	+				+2.2
1,466,270	+				+0.5
1,466,270	+				+0.3
1,466,270	+				-0.6
1,466,271	-				-2.7
1,466,271	-				+0.9
1,466,271	-				-1.1
1,466,271	-				-0.4
1,466,271	-				+1.3
1,466,271	-				+1.6
1,466,271	-				-0.9
1,466,271	-				+1.7
1,466,271	-				+0.8
1,466,271	-				+0.2
1,466,271	-				-1.4
1,466,271	-				+0.4
1,466,271	-				-0.5
1,466,271	-				+0.1
1,466,273	+				-1.3
1,466,273	+				+0.0
1,466,273	+				-1.1
1,466,273	+				-0.6
1,466,273	+				-2.4
1,466,273	+				+1.6
1,466,273	+				+0.9
1,466,273	+				-2.1
1,466,273	+				+0.5
1,466,273	+				-1.8
1,466,273	+				+0.4
1,466,273	+				+0.6
1,466,273	+				+0.6
1,466,273	+				+0.3
1,466,273	+				-0.2
1,466,273	+				+1.2
1,466,273	+				+1.7
1,466,273	+				+0.5
1,466,274	-				+0.2
1,466,274	-				-0.3
1,466,274	-				+0.1
1,466,274	-				-0.1
1,466,274	-				-0.1
1,466,274	-				+1.5
1,466,274	-				+0.3
1,466,274	-				+1.6
1,466,274	-				+0.8
1,466,274	-				+0.6
1,466,274	-				-2.8
1,466,274	-				+1.9
1,466,274	-				+2.0
1,466,274	-				-2.2
1,466,274	-				-0.5
1,466,274	-				+0.6
1,466,274	-				-2.5
1,466,282	+				+0.6
1,466,285	+				+1.3
1,466,285	+				-0.1
1,466,285	+				-2.7
1,466,285	+				-2.0
1,466,285	+				-0.0
1,466,285	+				-0.4
1,466,285	+				+0.1
1,466,285	+				-2.0
1,466,285	+				+1.0
1,466,285	+				-2.6
1,466,285	+				-1.8
1,466,285	+				-2.9
1,466,285	+				-0.2
1,466,285	+				-1.5
1,466,285	+				-0.1
1,466,285	+				-2.2
1,466,286	-				-1.0
1,466,286	-				+0.0
1,466,286	-				-1.5
1,466,286	-				+1.7
1,466,286	-				+0.3
1,466,286	-				-1.1
1,466,286	-				-0.4
1,466,286	-				-1.7
1,466,286	-				+0.2
1,466,286	-				+1.1
1,466,286	-				+1.0
1,466,286	-				+0.3
1,466,286	-				-1.1
1,466,286	-				+0.5
1,466,286	-				+3.5
1,466,286	-				-0.6
1,466,286	-				+0.5
1,466,286	-				+0.7
1,466,286	-				+0.9
1,466,286	-				-0.1
1,466,286	-				+1.0
1,466,286	-				+0.7
1,466,286	-				-0.1
1,466,286	-				+2.2
1,466,288	+				+1.6
1,466,288	+				-0.9
1,466,288	+				-0.6
1,466,288	+				+0.0
1,466,289	-				-2.6
1,466,289	-				+0.2
1,466,289	-				+0.2
1,466,289	-				-0.3
1,466,289	-				+1.5
1,466,289	-				+0.9
1,466,289	-				+1.2
1,466,289	-				-1.9
1,466,333	-				+0.3
1,466,348	+				+2.4
1,466,348	+				+0.2
1,466,348	+				+0.3
1,466,348	+				-0.1
1,466,349	-				-0.0
1,466,401	+				-1.6
1,466,401	+				-0.2
1,466,402	-				-1.9
1,466,402	-				+1.8
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