Strain Fitness in Escherichia fergusonii Becca around EFB2_01194

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,251,069	-				+0.1
1,251,069	-				+0.6
1,251,069	-				-1.0
1,251,069	-				+2.1
1,251,069	-				-1.5
1,251,069	-				-0.6
1,251,069	-				+0.7
1,251,069	-				-0.7
1,251,069	-				-0.2
1,251,069	-				-0.2
1,251,069	-				-0.7
1,251,069	-				+0.2
1,251,069	-				-1.2
1,251,069	-				-0.9
1,251,069	-				+0.5
1,251,069	-				-0.3
1,251,069	-				-3.2
1,251,069	-				+2.3
1,251,069	-				-3.0
1,251,069	-				-0.2
1,251,069	-				+0.2
1,251,069	-				+0.3
1,251,070	+				+0.2
1,251,070	+				-0.5
1,251,070	+				-0.4
1,251,070	+				+1.0
1,251,070	+				+0.2
1,251,070	+				-1.1
1,251,071	-				-1.6
1,251,071	-				-0.4
1,251,071	-				+0.3
1,251,071	-				-0.8
1,251,071	-				-0.5
1,251,071	-				+2.3
1,251,096	-				-0.5
1,251,120	+				+0.4
1,251,120	+				-2.0
1,251,120	+				-2.4
1,251,121	-				-0.9
1,251,121	-				+0.3
1,251,121	-				+0.4
1,251,121	-				-0.0
1,251,145	+				-0.5
1,251,145	+				+1.0
1,251,145	+				-0.8
1,251,145	+				-0.2
1,251,145	+				+2.0
1,251,145	+				-2.6
1,251,145	+				+1.2
1,251,146	-				+2.1
1,251,146	-				-1.0
1,251,146	-				-0.9
1,251,146	-				-0.6
1,251,146	-				+0.2
1,251,146	-				+1.3
1,251,146	-				-0.8
1,251,146	-				-0.5
1,251,152	+				+0.3
1,251,152	+				-2.7
1,251,152	+				+3.3
1,251,152	+				+0.3
1,251,152	+				+0.3
1,251,152	+				-3.0
1,251,152	+				-0.3
1,251,152	+				+1.3
1,251,152	+				-0.8
1,251,153	-				-0.4
1,251,153	-				+0.5
1,251,153	-				-3.8
1,251,153	-				-0.7
1,251,153	-				-2.4
1,251,155	+				-0.2
1,251,155	+				+0.8
1,251,155	+				-2.4
1,251,155	+				+0.7
1,251,155	+				-1.3
1,251,155	+				+0.5
1,251,155	+				-1.1
1,251,155	+				+1.4
1,251,155	+				-1.1
1,251,156	-				-1.1
1,251,156	-				-0.3
1,251,156	-				-0.5
1,251,156	-				+0.5
1,251,156	-				-0.9
1,251,156	-				+0.3
1,251,156	-				-0.7
1,251,156	-				+1.1
1,251,156	-				+1.7
1,251,200	+		EFB2_01193	0.14	-0.3
1,251,200	+		EFB2_01193	0.14	-0.2
1,251,200	+		EFB2_01193	0.14	+0.1
1,251,201	-		EFB2_01193	0.14	+0.2
1,251,271	+		EFB2_01193	0.21	-0.8
1,251,319	+		EFB2_01193	0.25	-0.5
1,251,349	+		EFB2_01193	0.28	+0.9
1,251,350	-		EFB2_01193	0.28	+0.5
1,251,392	+		EFB2_01193	0.33	-1.3
1,251,392	+		EFB2_01193	0.33	-0.0
1,251,393	-		EFB2_01193	0.33	-0.1
1,251,455	-		EFB2_01193	0.39	-0.2
1,251,503	+		EFB2_01193	0.44	-2.1
1,251,503	+		EFB2_01193	0.44	+0.2
1,251,503	+		EFB2_01193	0.44	-0.0
1,251,503	+		EFB2_01193	0.44	+0.3
1,251,503	+		EFB2_01193	0.44	-0.7
1,251,503	+		EFB2_01193	0.44	-1.7
1,251,503	+		EFB2_01193	0.44	+2.4
1,251,504	-		EFB2_01193	0.44	+0.2
1,251,504	-		EFB2_01193	0.44	+0.3
1,251,504	-		EFB2_01193	0.44	-1.0
1,251,526	+		EFB2_01193	0.46	-2.4
1,251,527	-		EFB2_01193	0.46	+0.8
1,251,551	-		EFB2_01193	0.48	-0.2
1,251,566	+		EFB2_01193	0.50	+1.9
1,251,566	+		EFB2_01193	0.50	-1.1
1,251,566	+		EFB2_01193	0.50	-2.7
1,251,566	+		EFB2_01193	0.50	-0.7
1,251,566	+		EFB2_01193	0.50	+0.3
1,251,566	+		EFB2_01193	0.50	+3.3
1,251,566	+		EFB2_01193	0.50	-1.2
1,251,566	+		EFB2_01193	0.50	-0.3
1,251,566	+		EFB2_01193	0.50	-0.2
1,251,566	+		EFB2_01193	0.50	+0.5
1,251,566	+		EFB2_01193	0.50	-0.1
1,251,566	+		EFB2_01193	0.50	+0.9
1,251,566	+		EFB2_01193	0.50	-1.1
1,251,566	+		EFB2_01193	0.50	-2.9
1,251,566	+		EFB2_01193	0.50	-1.9
1,251,566	+		EFB2_01193	0.50	-1.3
1,251,566	+		EFB2_01193	0.50	+2.0
1,251,566	+		EFB2_01193	0.50	-0.4
1,251,566	+		EFB2_01193	0.50	+0.4
1,251,566	+		EFB2_01193	0.50	+2.0
1,251,566	+		EFB2_01193	0.50	+0.4
1,251,566	+		EFB2_01193	0.50	-1.9
1,251,566	+		EFB2_01193	0.50	-1.5
1,251,566	+		EFB2_01193	0.50	+0.5
1,251,566	+		EFB2_01193	0.50	-0.2
1,251,566	+		EFB2_01193	0.50	-0.1
1,251,566	+		EFB2_01193	0.50	+0.0
1,251,566	+		EFB2_01193	0.50	+1.8
1,251,566	+		EFB2_01193	0.50	+0.9
1,251,566	+		EFB2_01193	0.50	-2.7
1,251,567	-		EFB2_01193	0.50	+0.4
1,251,567	-		EFB2_01193	0.50	+0.1
1,251,567	-		EFB2_01193	0.50	-1.7
1,251,567	-		EFB2_01193	0.50	+0.3
1,251,567	-		EFB2_01193	0.50	-2.4
1,251,567	-		EFB2_01193	0.50	+0.1
1,251,567	-		EFB2_01193	0.50	+1.8
1,251,567	-		EFB2_01193	0.50	-2.4
1,251,567	-		EFB2_01193	0.50	+0.1
1,251,567	-		EFB2_01193	0.50	-2.0
1,251,567	-		EFB2_01193	0.50	-0.7
1,251,567	-		EFB2_01193	0.50	-0.3
1,251,567	-		EFB2_01193	0.50	+0.7
1,251,567	-		EFB2_01193	0.50	-0.3
1,251,567	-		EFB2_01193	0.50	+0.5
1,251,567	-		EFB2_01193	0.50	+0.6
1,251,567	-		EFB2_01193	0.50	-2.2
1,251,567	-		EFB2_01193	0.50	+1.4
1,251,567	-		EFB2_01193	0.50	-1.1
1,251,567	-		EFB2_01193	0.50	+1.3
1,251,567	-		EFB2_01193	0.50	+0.0
1,251,567	-		EFB2_01193	0.50	-0.8
1,251,641	-		EFB2_01193	0.57	+0.9
1,251,649	+		EFB2_01193	0.58	+0.8
1,251,650	-		EFB2_01193	0.58	-2.5
1,251,650	-		EFB2_01193	0.58	-0.5
1,251,650	-		EFB2_01193	0.58	+1.6
1,251,650	-		EFB2_01193	0.58	-1.8
1,251,669	-		EFB2_01193	0.60	-1.6
1,251,795	+		EFB2_01193	0.73	+0.1
1,251,795	+		EFB2_01193	0.73	-2.4
1,251,795	+		EFB2_01193	0.73	-1.9
1,251,796	-		EFB2_01193	0.73	-1.7
1,251,796	-		EFB2_01193	0.73	+0.1
1,251,796	-		EFB2_01193	0.73	-0.2
1,251,859	+		EFB2_01193	0.79	+1.3
1,251,860	-		EFB2_01193	0.79	+1.0
1,251,862	+		EFB2_01193	0.79	+0.1
1,251,894	+		EFB2_01193	0.82	-2.8
1,251,894	+		EFB2_01193	0.82	+0.2
1,251,894	+		EFB2_01193	0.82	-0.8
1,251,894	+		EFB2_01193	0.82	-1.0
1,251,894	+		EFB2_01193	0.82	-0.4
1,251,894	+		EFB2_01193	0.82	-0.4
1,251,894	+		EFB2_01193	0.82	-0.6
1,251,894	+		EFB2_01193	0.82	-0.1
1,251,894	+		EFB2_01193	0.82	+0.4
1,251,894	+		EFB2_01193	0.82	-0.7
1,251,894	+		EFB2_01193	0.82	+0.9
1,251,894	+		EFB2_01193	0.82	-0.8
1,251,894	+		EFB2_01193	0.82	+1.9
1,251,894	+		EFB2_01193	0.82	+1.0
1,251,894	+		EFB2_01193	0.82	-2.1
1,251,894	+		EFB2_01193	0.82	-2.0
1,251,894	+		EFB2_01193	0.82	+2.8
1,251,895	-		EFB2_01193	0.82	+1.3
1,251,895	-		EFB2_01193	0.82	-1.5
1,251,895	-		EFB2_01193	0.82	+0.4
1,251,895	-		EFB2_01193	0.82	+0.6
1,251,895	-		EFB2_01193	0.82	-1.7
1,251,895	-		EFB2_01193	0.82	-0.0
1,251,895	-		EFB2_01193	0.82	+2.3
1,251,895	-		EFB2_01193	0.82	+0.4
1,251,895	-		EFB2_01193	0.82	-0.5
1,251,895	-		EFB2_01193	0.82	-0.9
1,251,895	-		EFB2_01193	0.82	-1.2
1,251,895	-		EFB2_01193	0.82	-2.6
1,251,895	-		EFB2_01193	0.82	+0.7
1,251,895	-		EFB2_01193	0.82	-2.5
1,251,895	-		EFB2_01193	0.82	-3.0
1,251,895	-		EFB2_01193	0.82	+0.9
1,251,895	-		EFB2_01193	0.82	+1.0
1,251,895	-		EFB2_01193	0.82	+0.3
1,251,895	-		EFB2_01193	0.82	+1.2
1,251,895	-		EFB2_01193	0.82	+0.5
1,251,895	-		EFB2_01193	0.82	-0.1
1,251,895	-		EFB2_01193	0.82	-1.4
1,251,895	-		EFB2_01193	0.82	-2.5
1,251,895	-		EFB2_01193	0.82	+4.3
1,251,895	-		EFB2_01193	0.82	+1.1
1,252,003	+				-2.6
1,252,003	+				+0.4
1,252,003	+				+0.7
1,252,004	-				-0.1
1,252,019	+				-0.2
1,252,019	+				-0.9
1,252,019	+				-0.2
1,252,020	-				+0.7
1,252,020	-				-0.4
1,252,063	+				-0.0
1,252,063	+				+0.5
1,252,064	-				-0.5
1,252,064	-				+1.3
1,252,066	+				+1.4
1,252,066	+				+1.3
1,252,066	+				-0.1
1,252,066	+				+0.1
1,252,066	+				+0.3
1,252,066	+				+1.2
1,252,067	-				-0.1
1,252,067	-				-0.8
1,252,067	-				+1.1
1,252,067	-				-0.0
1,252,100	+				-2.9
1,252,100	+				-0.5
1,252,101	-				-0.7
1,252,101	-				-2.5
1,252,101	-				-2.6
1,252,161	+				-0.9
1,252,161	+				+0.3
1,252,161	+				+1.0
1,252,161	+				+1.0
1,252,161	+				-0.9
1,252,161	+				+2.6
1,252,162	-				-1.0
1,252,162	-				+0.7
1,252,162	-				+0.1
1,252,171	-				+0.8
1,252,197	+		EFB2_01194	0.11	+0.9
1,252,197	+		EFB2_01194	0.11	-0.8
1,252,197	+		EFB2_01194	0.11	+0.8
1,252,197	+		EFB2_01194	0.11	-0.5
1,252,197	+		EFB2_01194	0.11	-0.0
1,252,197	+		EFB2_01194	0.11	+1.4
1,252,198	-		EFB2_01194	0.11	-0.1
1,252,198	-		EFB2_01194	0.11	+0.1
1,252,198	-		EFB2_01194	0.11	+0.1
1,252,198	-		EFB2_01194	0.11	+0.4
1,252,295	+		EFB2_01194	0.20	+2.0
1,252,296	-		EFB2_01194	0.20	-1.9
1,252,336	+		EFB2_01194	0.24	-0.0
1,252,337	-		EFB2_01194	0.24	-0.8
1,252,441	+		EFB2_01194	0.33	-0.3
1,252,441	+		EFB2_01194	0.33	+2.8
1,252,441	+		EFB2_01194	0.33	-0.3
1,252,441	+		EFB2_01194	0.33	+0.7
1,252,442	-		EFB2_01194	0.33	+1.3
1,252,442	-		EFB2_01194	0.33	+1.2
1,252,442	-		EFB2_01194	0.33	-2.0
1,252,442	-		EFB2_01194	0.33	+0.2
1,252,442	-		EFB2_01194	0.33	+0.4
1,252,459	+		EFB2_01194	0.35	-2.3
1,252,460	-		EFB2_01194	0.35	+1.5
1,252,495	+		EFB2_01194	0.38	+0.8
1,252,495	+		EFB2_01194	0.38	+0.7
1,252,495	+		EFB2_01194	0.38	+0.1
1,252,495	+		EFB2_01194	0.38	+0.2
1,252,495	+		EFB2_01194	0.38	-1.6
1,252,495	+		EFB2_01194	0.38	-0.1
1,252,495	+		EFB2_01194	0.38	+0.6
1,252,495	+		EFB2_01194	0.38	+0.6
1,252,495	+		EFB2_01194	0.38	-0.4
1,252,495	+		EFB2_01194	0.38	+1.3
1,252,496	-		EFB2_01194	0.38	+0.0
1,252,496	-		EFB2_01194	0.38	+1.5
1,252,496	-		EFB2_01194	0.38	+0.3
1,252,496	-		EFB2_01194	0.38	-2.1
1,252,496	-		EFB2_01194	0.38	-1.9
1,252,496	-		EFB2_01194	0.38	-1.9
1,252,496	-		EFB2_01194	0.38	+0.6
1,252,551	+		EFB2_01194	0.43	+0.7
1,252,551	+		EFB2_01194	0.43	+0.3
1,252,557	+		EFB2_01194	0.43	-1.0
1,252,557	+		EFB2_01194	0.43	+0.9
1,252,557	+		EFB2_01194	0.43	+3.0
1,252,558	-		EFB2_01194	0.44	-1.5
1,252,559	+		EFB2_01194	0.44	-0.9
1,252,559	+		EFB2_01194	0.44	+0.7
1,252,559	+		EFB2_01194	0.44	-2.2
1,252,559	+		EFB2_01194	0.44	+0.8
1,252,559	+		EFB2_01194	0.44	-0.5
1,252,560	-		EFB2_01194	0.44	+1.8
1,252,560	-		EFB2_01194	0.44	-0.2
1,252,560	-		EFB2_01194	0.44	+0.7
1,252,581	+		EFB2_01194	0.46	+1.6
1,252,581	+		EFB2_01194	0.46	+0.5
1,252,581	+		EFB2_01194	0.46	+0.8
1,252,581	+		EFB2_01194	0.46	+0.7
1,252,582	-		EFB2_01194	0.46	-0.3
1,252,582	-		EFB2_01194	0.46	-1.7
1,252,621	-		EFB2_01194	0.49	-0.8
1,252,662	+		EFB2_01194	0.53	+1.1
1,252,662	+		EFB2_01194	0.53	-2.0
1,252,662	+		EFB2_01194	0.53	-0.9
1,252,662	+		EFB2_01194	0.53	-0.7
1,252,662	+		EFB2_01194	0.53	-2.1
1,252,662	+		EFB2_01194	0.53	+0.4
1,252,663	-		EFB2_01194	0.53	-0.2
1,252,663	-		EFB2_01194	0.53	+0.7
1,252,663	-		EFB2_01194	0.53	-2.3
1,252,663	-		EFB2_01194	0.53	+0.6
1,252,663	-		EFB2_01194	0.53	+1.6
1,252,663	-		EFB2_01194	0.53	+1.4
1,252,663	-		EFB2_01194	0.53	+0.7
1,252,683	-		EFB2_01194	0.55	-2.6
1,252,756	+		EFB2_01194	0.61	+0.5
1,252,757	-		EFB2_01194	0.61	-1.7
1,252,768	+		EFB2_01194	0.62	+0.1
1,252,768	+		EFB2_01194	0.62	+2.3
1,252,769	-		EFB2_01194	0.62	+0.5
1,252,769	-		EFB2_01194	0.62	+1.5
1,252,769	-		EFB2_01194	0.62	-0.2
1,252,805	-		EFB2_01194	0.66	-1.1
1,252,824	-		EFB2_01194	0.67	+1.0
1,252,886	-		EFB2_01194	0.73	+1.0
1,252,908	+		EFB2_01194	0.75	+0.7
1,252,908	+		EFB2_01194	0.75	+0.1
1,252,909	-		EFB2_01194	0.75	+1.5
1,252,909	-		EFB2_01194	0.75	+0.5
1,252,909	-		EFB2_01194	0.75	-0.0
1,252,959	+		EFB2_01194	0.79	+1.8
1,252,959	+		EFB2_01194	0.79	+0.6
1,252,959	+		EFB2_01194	0.79	+0.6
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