Strain Fitness in Escherichia fergusonii Becca around EFB2_01028

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,059,233	+				-0.1
1,059,234	-				+2.0
1,059,234	-				-1.1
1,059,234	-				-1.3
1,059,234	-				-0.8
1,059,253	+				-0.3
1,059,253	+				-1.9
1,059,254	-				-0.5
1,059,254	-				+1.0
1,059,309	+				-0.0
1,059,309	+				+1.1
1,059,315	-				-0.1
1,059,371	+		EFB2_01027	0.13	+0.5
1,059,372	-		EFB2_01027	0.13	+0.8
1,059,372	-		EFB2_01027	0.13	-1.1
1,059,372	-		EFB2_01027	0.13	+1.1
1,059,380	+		EFB2_01027	0.14	+1.7
1,059,380	+		EFB2_01027	0.14	+0.1
1,059,380	+		EFB2_01027	0.14	+1.2
1,059,380	+		EFB2_01027	0.14	-0.0
1,059,380	+		EFB2_01027	0.14	-1.8
1,059,380	+		EFB2_01027	0.14	+0.7
1,059,380	+		EFB2_01027	0.14	+0.5
1,059,380	+		EFB2_01027	0.14	+0.0
1,059,380	+		EFB2_01027	0.14	+2.3
1,059,380	+		EFB2_01027	0.14	+0.3
1,059,380	+		EFB2_01027	0.14	+1.7
1,059,380	+		EFB2_01027	0.14	+0.6
1,059,380	+		EFB2_01027	0.14	-2.4
1,059,380	+		EFB2_01027	0.14	+0.7
1,059,380	+		EFB2_01027	0.14	+2.1
1,059,380	+		EFB2_01027	0.14	-0.3
1,059,380	+		EFB2_01027	0.14	-0.9
1,059,380	+		EFB2_01027	0.14	+0.8
1,059,381	-		EFB2_01027	0.14	-0.1
1,059,381	-		EFB2_01027	0.14	+1.4
1,059,381	-		EFB2_01027	0.14	+0.2
1,059,381	-		EFB2_01027	0.14	+2.9
1,059,381	-		EFB2_01027	0.14	+0.8
1,059,381	-		EFB2_01027	0.14	-1.3
1,059,381	-		EFB2_01027	0.14	-0.7
1,059,381	-		EFB2_01027	0.14	+1.6
1,059,381	-		EFB2_01027	0.14	-1.4
1,059,381	-		EFB2_01027	0.14	+0.3
1,059,381	-		EFB2_01027	0.14	+0.6
1,059,381	-		EFB2_01027	0.14	+0.8
1,059,381	-		EFB2_01027	0.14	-0.3
1,059,381	-		EFB2_01027	0.14	+0.9
1,059,381	-		EFB2_01027	0.14	+1.2
1,059,381	-		EFB2_01027	0.14	+1.3
1,059,381	-		EFB2_01027	0.14	-1.7
1,059,381	-		EFB2_01027	0.14	-0.7
1,059,381	-		EFB2_01027	0.14	+1.5
1,059,381	-		EFB2_01027	0.14	+0.9
1,059,429	+		EFB2_01027	0.19	-0.4
1,059,429	+		EFB2_01027	0.19	-0.4
1,059,430	-		EFB2_01027	0.19	-1.1
1,059,430	-		EFB2_01027	0.19	-0.2
1,059,430	-		EFB2_01027	0.19	+0.8
1,059,430	-		EFB2_01027	0.19	+2.4
1,059,430	-		EFB2_01027	0.19	-2.4
1,059,430	-		EFB2_01027	0.19	+0.3
1,059,473	+		EFB2_01027	0.24	-2.1
1,059,473	+		EFB2_01027	0.24	-1.0
1,059,473	+		EFB2_01027	0.24	+0.4
1,059,473	+		EFB2_01027	0.24	-0.5
1,059,473	+		EFB2_01027	0.24	+0.8
1,059,473	+		EFB2_01027	0.24	-1.3
1,059,473	+		EFB2_01027	0.24	-0.9
1,059,474	-		EFB2_01027	0.24	+0.2
1,059,474	-		EFB2_01027	0.24	-2.1
1,059,513	-		EFB2_01027	0.28	-2.9
1,059,513	-		EFB2_01027	0.28	+0.3
1,059,513	-		EFB2_01027	0.28	-0.9
1,059,558	-		EFB2_01027	0.33	-0.2
1,059,590	+		EFB2_01027	0.36	+1.3
1,059,590	+		EFB2_01027	0.36	+1.4
1,059,590	+		EFB2_01027	0.36	+1.2
1,059,590	+		EFB2_01027	0.36	-0.5
1,059,590	+		EFB2_01027	0.36	-1.2
1,059,590	+		EFB2_01027	0.36	-2.2
1,059,651	+		EFB2_01027	0.43	+1.4
1,059,651	+		EFB2_01027	0.43	-0.7
1,059,651	+		EFB2_01027	0.43	-1.5
1,059,651	+		EFB2_01027	0.43	+0.4
1,059,652	-		EFB2_01027	0.43	-2.0
1,059,652	-		EFB2_01027	0.43	-3.6
1,059,652	-		EFB2_01027	0.43	-0.1
1,059,652	-		EFB2_01027	0.43	-3.1
1,059,748	+		EFB2_01027	0.53	+0.5
1,059,748	+		EFB2_01027	0.53	-1.4
1,059,748	+		EFB2_01027	0.53	-0.6
1,059,748	+		EFB2_01027	0.53	+1.9
1,059,749	-		EFB2_01027	0.53	+1.2
1,059,749	-		EFB2_01027	0.53	-1.3
1,059,749	-		EFB2_01027	0.53	-2.1
1,059,749	-		EFB2_01027	0.53	-0.0
1,059,749	-		EFB2_01027	0.53	+0.2
1,059,749	-		EFB2_01027	0.53	-0.5
1,059,749	-		EFB2_01027	0.53	-2.3
1,059,749	-		EFB2_01027	0.53	-1.0
1,059,749	-		EFB2_01027	0.53	+0.8
1,059,749	-		EFB2_01027	0.53	-1.6
1,059,765	+		EFB2_01027	0.55	+0.1
1,059,765	+		EFB2_01027	0.55	-0.0
1,059,765	+		EFB2_01027	0.55	-0.5
1,059,765	+		EFB2_01027	0.55	-0.7
1,059,765	+		EFB2_01027	0.55	-0.3
1,059,766	-		EFB2_01027	0.55	-1.5
1,059,766	-		EFB2_01027	0.55	+0.1
1,059,766	-		EFB2_01027	0.55	+0.7
1,059,766	-		EFB2_01027	0.55	-0.1
1,059,766	-		EFB2_01027	0.55	-0.4
1,059,766	-		EFB2_01027	0.55	+0.5
1,059,766	-		EFB2_01027	0.55	-0.1
1,059,833	+		EFB2_01027	0.62	-0.7
1,059,834	-		EFB2_01027	0.62	-1.9
1,059,834	-		EFB2_01027	0.62	+1.6
1,059,867	+		EFB2_01027	0.66	+1.0
1,059,867	+		EFB2_01027	0.66	+0.2
1,059,867	+		EFB2_01027	0.66	-0.8
1,059,868	-		EFB2_01027	0.66	-0.1
1,059,868	-		EFB2_01027	0.66	-3.2
1,059,868	-		EFB2_01027	0.66	-0.4
1,059,875	+		EFB2_01027	0.67	+0.0
1,059,875	+		EFB2_01027	0.67	-0.2
1,059,875	+		EFB2_01027	0.67	-0.8
1,059,876	-		EFB2_01027	0.67	-0.9
1,059,876	-		EFB2_01027	0.67	-2.0
1,059,876	-		EFB2_01027	0.67	-1.5
1,059,876	-		EFB2_01027	0.67	-0.1
1,059,876	-		EFB2_01027	0.67	-0.1
1,059,876	-		EFB2_01027	0.67	-1.0
1,059,878	+		EFB2_01027	0.67	+0.4
1,059,878	+		EFB2_01027	0.67	-2.0
1,059,878	+		EFB2_01027	0.67	-3.6
1,059,878	+		EFB2_01027	0.67	-0.0
1,059,906	+		EFB2_01027	0.70	+0.1
1,059,907	-		EFB2_01027	0.70	-1.7
1,059,918	+		EFB2_01027	0.71	+0.6
1,059,919	-		EFB2_01027	0.71	+1.3
1,059,919	-		EFB2_01027	0.71	-1.2
1,059,919	-		EFB2_01027	0.71	-0.3
1,059,925	+		EFB2_01027	0.72	-1.1
1,059,926	-		EFB2_01027	0.72	-0.9
1,059,932	+		EFB2_01027	0.73	+1.3
1,059,932	+		EFB2_01027	0.73	+1.1
1,059,932	+		EFB2_01027	0.73	-0.3
1,059,932	+		EFB2_01027	0.73	-0.7
1,059,932	+		EFB2_01027	0.73	+0.6
1,059,932	+		EFB2_01027	0.73	+0.3
1,059,932	+		EFB2_01027	0.73	+0.0
1,059,932	+		EFB2_01027	0.73	-0.1
1,059,933	-		EFB2_01027	0.73	-0.5
1,059,934	+		EFB2_01027	0.73	-0.2
1,059,934	+		EFB2_01027	0.73	+0.8
1,059,934	+		EFB2_01027	0.73	+1.4
1,059,934	+		EFB2_01027	0.73	+0.6
1,059,934	+		EFB2_01027	0.73	+1.4
1,059,934	+		EFB2_01027	0.73	-0.1
1,059,934	+		EFB2_01027	0.73	-0.7
1,059,934	+		EFB2_01027	0.73	-1.1
1,059,934	+		EFB2_01027	0.73	-1.9
1,059,934	+		EFB2_01027	0.73	-0.6
1,059,934	+		EFB2_01027	0.73	-2.0
1,059,934	+		EFB2_01027	0.73	+0.3
1,059,934	+		EFB2_01027	0.73	-0.2
1,059,934	+		EFB2_01027	0.73	-2.2
1,059,934	+		EFB2_01027	0.73	-2.1
1,059,934	+		EFB2_01027	0.73	+1.0
1,059,934	+		EFB2_01027	0.73	+0.6
1,059,934	+		EFB2_01027	0.73	-2.6
1,059,934	+		EFB2_01027	0.73	-2.2
1,059,934	+		EFB2_01027	0.73	-0.3
1,059,935	-		EFB2_01027	0.73	+1.8
1,059,935	-		EFB2_01027	0.73	-0.6
1,059,935	-		EFB2_01027	0.73	-1.0
1,059,935	-		EFB2_01027	0.73	+0.4
1,059,935	-		EFB2_01027	0.73	+1.7
1,059,935	-		EFB2_01027	0.73	-0.0
1,059,935	-		EFB2_01027	0.73	+0.4
1,059,935	-		EFB2_01027	0.73	+1.4
1,059,935	-		EFB2_01027	0.73	+1.7
1,059,935	-		EFB2_01027	0.73	-1.0
1,059,935	-		EFB2_01027	0.73	-2.1
1,059,935	-		EFB2_01027	0.73	-1.4
1,059,935	-		EFB2_01027	0.73	-0.3
1,059,935	-		EFB2_01027	0.73	-0.0
1,059,935	-		EFB2_01027	0.73	+0.0
1,059,935	-		EFB2_01027	0.73	+1.4
1,059,935	-		EFB2_01027	0.73	-3.2
1,059,935	-		EFB2_01027	0.73	-0.3
1,059,935	-		EFB2_01027	0.73	-0.4
1,059,945	+		EFB2_01027	0.74	+0.0
1,059,945	+		EFB2_01027	0.74	-0.3
1,059,945	+		EFB2_01027	0.74	+0.8
1,059,946	-		EFB2_01027	0.74	-1.0
1,060,020	-		EFB2_01027	0.82	+0.1
1,060,080	+		EFB2_01027	0.89	-3.1
1,060,080	+		EFB2_01027	0.89	-1.9
1,060,081	-		EFB2_01027	0.89	+1.5
1,060,081	-		EFB2_01027	0.89	+0.7
1,060,104	-				+0.4
1,060,178	+				+0.4
1,060,178	+				-0.5
1,060,178	+				-1.2
1,060,213	+				+0.3
1,060,213	+				-1.0
1,060,213	+				-1.0
1,060,213	+				-1.9
1,060,213	+				+0.5
1,060,213	+				-1.2
1,060,213	+				-1.8
1,060,213	+				-0.2
1,060,214	-				-1.7
1,060,214	-				-1.9
1,060,214	-				+1.4
1,060,214	-				-0.2
1,060,214	-				-2.4
1,060,214	-				+0.6
1,060,214	-				-0.4
1,060,214	-				-1.6
1,060,214	-				+0.2
1,060,214	-				-0.7
1,060,214	-				-4.0
1,060,215	+				+1.6
1,060,215	+				+2.8
1,060,215	+				+0.3
1,060,215	+				-0.0
1,060,215	+				-1.1
1,060,215	+				+0.1
1,060,215	+				-1.5
1,060,215	+				+0.2
1,060,215	+				+2.3
1,060,215	+				+0.7
1,060,215	+				+0.2
1,060,215	+				+0.3
1,060,215	+				+0.6
1,060,215	+				+0.9
1,060,215	+				+0.5
1,060,215	+				+0.4
1,060,215	+				-0.7
1,060,215	+				-0.3
1,060,215	+				+0.4
1,060,215	+				-0.2
1,060,215	+				+0.7
1,060,215	+				+0.6
1,060,215	+				-0.4
1,060,215	+				+1.5
1,060,215	+				-2.1
1,060,215	+				-0.3
1,060,215	+				-1.6
1,060,215	+				-1.3
1,060,215	+				-1.8
1,060,216	-				+3.5
1,060,216	-				+0.8
1,060,216	-				-1.4
1,060,216	-				+1.7
1,060,216	-				+0.5
1,060,216	-				+0.7
1,060,216	-				-1.7
1,060,216	-				+1.0
1,060,216	-				-0.2
1,060,216	-				+1.0
1,060,216	-				-2.6
1,060,216	-				-0.9
1,060,216	-				+0.3
1,060,216	-				+1.1
1,060,216	-				+0.1
1,060,216	-				+1.0
1,060,216	-				+0.0
1,060,216	-				-0.7
1,060,216	-				+1.3
1,060,216	-				-0.2
1,060,216	-				-1.4
1,060,216	-				+0.7
1,060,216	-				-2.2
1,060,216	-				-0.7
1,060,216	-				-0.3
1,060,216	-				+1.5
1,060,216	-				+0.8
1,060,216	-				-0.9
1,060,216	-				-1.7
1,060,216	-				-3.2
1,060,216	-				+0.2
1,060,216	-				+0.2
1,060,234	-				+0.3
1,060,234	-				-0.4
1,060,295	-				-0.4
1,060,331	+				-1.2
1,060,332	-				-0.2
1,060,360	+				+0.3
1,060,360	+				+0.7
1,060,361	-				+1.3
1,060,361	-				-0.8
1,060,361	-				-1.0
1,060,361	-				+0.3
1,060,361	-				-0.9
1,060,361	-				-2.0
1,060,361	-				+0.7
1,060,361	-				+0.4
1,060,380	+		EFB2_01028	0.11	+0.1
1,060,380	+		EFB2_01028	0.11	+0.4
1,060,381	-		EFB2_01028	0.11	-0.5
1,060,436	+		EFB2_01028	0.15	-0.2
1,060,436	+		EFB2_01028	0.15	-0.5
1,060,436	+		EFB2_01028	0.15	-0.5
1,060,436	+		EFB2_01028	0.15	-0.8
1,060,436	+		EFB2_01028	0.15	-0.7
1,060,436	+		EFB2_01028	0.15	-2.0
1,060,436	+		EFB2_01028	0.15	-3.4
1,060,436	+		EFB2_01028	0.15	-0.3
1,060,436	+		EFB2_01028	0.15	+0.9
1,060,436	+		EFB2_01028	0.15	-0.1
1,060,436	+		EFB2_01028	0.15	-0.5
1,060,436	+		EFB2_01028	0.15	+0.0
1,060,436	+		EFB2_01028	0.15	+1.9
1,060,436	+		EFB2_01028	0.15	+0.0
1,060,436	+		EFB2_01028	0.15	-2.0
1,060,436	+		EFB2_01028	0.15	+3.0
1,060,436	+		EFB2_01028	0.15	-0.0
1,060,437	-		EFB2_01028	0.15	-0.5
1,060,437	-		EFB2_01028	0.15	-0.1
1,060,437	-		EFB2_01028	0.15	+1.2
1,060,437	-		EFB2_01028	0.15	+0.4
1,060,437	-		EFB2_01028	0.15	+0.3
1,060,437	-		EFB2_01028	0.15	-1.3
1,060,437	-		EFB2_01028	0.15	-1.7
1,060,437	-		EFB2_01028	0.15	+0.8
1,060,439	-		EFB2_01028	0.15	-0.7
1,060,439	-		EFB2_01028	0.15	-0.4
1,060,439	-		EFB2_01028	0.15	-2.7
1,060,439	-		EFB2_01028	0.15	-1.2
1,060,470	-		EFB2_01028	0.17	-0.7
1,060,470	-		EFB2_01028	0.17	+2.1
1,060,472	+		EFB2_01028	0.17	+1.0
1,060,472	+		EFB2_01028	0.17	+0.4
1,060,472	+		EFB2_01028	0.17	-0.3
1,060,472	+		EFB2_01028	0.17	+0.3
1,060,473	-		EFB2_01028	0.17	+0.7
1,060,473	-		EFB2_01028	0.17	-0.7
1,060,473	-		EFB2_01028	0.17	+0.7
1,060,523	+		EFB2_01028	0.21	+0.3
1,060,524	-		EFB2_01028	0.21	-1.7
1,060,549	+		EFB2_01028	0.23	+0.8
1,060,549	+		EFB2_01028	0.23	+0.1
1,060,549	+		EFB2_01028	0.23	+0.2
1,060,549	+		EFB2_01028	0.23	+1.2
1,060,549	+		EFB2_01028	0.23	+0.1
1,060,549	+		EFB2_01028	0.23	-1.5
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