Strain Fitness in Escherichia fergusonii Becca around EFB2_01024

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,055,105	+		EFB2_01023	0.79	-0.6
1,055,105	+		EFB2_01023	0.79	+0.7
1,055,105	+		EFB2_01023	0.79	-1.2
1,055,105	+		EFB2_01023	0.79	+1.5
1,055,105	+		EFB2_01023	0.79	-0.4
1,055,105	+		EFB2_01023	0.79	-1.2
1,055,105	+		EFB2_01023	0.79	-0.9
1,055,105	+		EFB2_01023	0.79	+0.7
1,055,105	+		EFB2_01023	0.79	-2.8
1,055,105	+		EFB2_01023	0.79	-0.2
1,055,105	+		EFB2_01023	0.79	-3.3
1,055,105	+		EFB2_01023	0.79	+0.7
1,055,105	+		EFB2_01023	0.79	+0.2
1,055,106	-		EFB2_01023	0.79	-2.5
1,055,106	-		EFB2_01023	0.79	-0.3
1,055,106	-		EFB2_01023	0.79	-1.0
1,055,106	-		EFB2_01023	0.79	-0.3
1,055,106	-		EFB2_01023	0.79	-1.1
1,055,106	-		EFB2_01023	0.79	+2.0
1,055,106	-		EFB2_01023	0.79	+0.6
1,055,106	-		EFB2_01023	0.79	+0.9
1,055,106	-		EFB2_01023	0.79	-0.5
1,055,106	-		EFB2_01023	0.79	+1.1
1,055,106	-		EFB2_01023	0.79	-0.4
1,055,106	-		EFB2_01023	0.79	-2.3
1,055,106	-		EFB2_01023	0.79	-0.2
1,055,106	-		EFB2_01023	0.79	-3.8
1,055,106	-		EFB2_01023	0.79	-1.7
1,055,177	+		EFB2_01023	0.81	-0.6
1,055,198	+		EFB2_01023	0.82	-0.8
1,055,198	+		EFB2_01023	0.82	+0.4
1,055,198	+		EFB2_01023	0.82	-0.1
1,055,198	+		EFB2_01023	0.82	-0.2
1,055,198	+		EFB2_01023	0.82	+1.4
1,055,199	-		EFB2_01023	0.82	-0.8
1,055,199	-		EFB2_01023	0.82	+1.1
1,055,199	-		EFB2_01023	0.82	+0.3
1,055,199	-		EFB2_01023	0.82	+0.8
1,055,199	-		EFB2_01023	0.82	+0.4
1,055,199	-		EFB2_01023	0.82	-3.7
1,055,199	-		EFB2_01023	0.82	+0.7
1,055,203	+		EFB2_01023	0.82	-1.5
1,055,203	+		EFB2_01023	0.82	+0.6
1,055,203	+		EFB2_01023	0.82	+1.1
1,055,203	+		EFB2_01023	0.82	-1.4
1,055,203	+		EFB2_01023	0.82	+0.9
1,055,203	+		EFB2_01023	0.82	+1.2
1,055,203	+		EFB2_01023	0.82	-0.0
1,055,203	+		EFB2_01023	0.82	-2.0
1,055,203	+		EFB2_01023	0.82	+0.7
1,055,203	+		EFB2_01023	0.82	+0.6
1,055,203	+		EFB2_01023	0.82	+2.3
1,055,204	-		EFB2_01023	0.82	-0.3
1,055,204	-		EFB2_01023	0.82	-0.8
1,055,204	-		EFB2_01023	0.82	-0.8
1,055,204	-		EFB2_01023	0.82	-1.5
1,055,204	-		EFB2_01023	0.82	+0.9
1,055,204	-		EFB2_01023	0.82	-0.4
1,055,204	-		EFB2_01023	0.82	-0.1
1,055,204	-		EFB2_01023	0.82	+0.1
1,055,204	-		EFB2_01023	0.82	+1.2
1,055,204	-		EFB2_01023	0.82	-2.1
1,055,204	-		EFB2_01023	0.82	+0.3
1,055,204	-		EFB2_01023	0.82	-1.8
1,055,204	-		EFB2_01023	0.82	+0.2
1,055,204	-		EFB2_01023	0.82	+0.9
1,055,204	-		EFB2_01023	0.82	+0.2
1,055,204	-		EFB2_01023	0.82	+0.7
1,055,204	-		EFB2_01023	0.82	-2.6
1,055,206	+		EFB2_01023	0.82	-0.9
1,055,207	-		EFB2_01023	0.82	-3.3
1,055,207	-		EFB2_01023	0.82	-0.4
1,055,207	-		EFB2_01023	0.82	+0.8
1,055,207	-		EFB2_01023	0.82	+1.0
1,055,207	-		EFB2_01023	0.82	-1.1
1,055,207	-		EFB2_01023	0.82	-0.6
1,055,207	-		EFB2_01023	0.82	+0.7
1,055,207	-		EFB2_01023	0.82	+0.2
1,055,207	-		EFB2_01023	0.82	+0.9
1,055,207	-		EFB2_01023	0.82	+2.1
1,055,207	-		EFB2_01023	0.82	+0.1
1,055,207	-		EFB2_01023	0.82	+0.7
1,055,257	+		EFB2_01023	0.84	+0.4
1,055,257	+		EFB2_01023	0.84	-2.1
1,055,257	+		EFB2_01023	0.84	-3.0
1,055,257	+		EFB2_01023	0.84	+0.2
1,055,257	+		EFB2_01023	0.84	+1.4
1,055,257	+		EFB2_01023	0.84	+2.3
1,055,257	+		EFB2_01023	0.84	+0.0
1,055,257	+		EFB2_01023	0.84	+0.7
1,055,257	+		EFB2_01023	0.84	-2.3
1,055,257	+		EFB2_01023	0.84	+1.0
1,055,257	+		EFB2_01023	0.84	-2.6
1,055,257	+		EFB2_01023	0.84	-0.1
1,055,258	-		EFB2_01023	0.84	+1.1
1,055,258	-		EFB2_01023	0.84	+1.2
1,055,258	-		EFB2_01023	0.84	-0.0
1,055,258	-		EFB2_01023	0.84	+1.6
1,055,258	-		EFB2_01023	0.84	-0.1
1,055,258	-		EFB2_01023	0.84	-0.2
1,055,258	-		EFB2_01023	0.84	+1.8
1,055,258	-		EFB2_01023	0.84	-2.3
1,055,258	-		EFB2_01023	0.84	-2.1
1,055,258	-		EFB2_01023	0.84	+0.7
1,055,258	-		EFB2_01023	0.84	-0.5
1,055,290	+		EFB2_01023	0.85	-2.8
1,055,290	+		EFB2_01023	0.85	-0.5
1,055,290	+		EFB2_01023	0.85	-1.9
1,055,290	+		EFB2_01023	0.85	+0.2
1,055,290	+		EFB2_01023	0.85	+0.8
1,055,290	+		EFB2_01023	0.85	+0.1
1,055,290	+		EFB2_01023	0.85	-0.6
1,055,290	+		EFB2_01023	0.85	+0.6
1,055,291	-		EFB2_01023	0.85	-0.8
1,055,291	-		EFB2_01023	0.85	+0.6
1,055,291	-		EFB2_01023	0.85	-0.6
1,055,291	-		EFB2_01023	0.85	-0.1
1,055,291	-		EFB2_01023	0.85	-0.7
1,055,291	-		EFB2_01023	0.85	-1.5
1,055,291	-		EFB2_01023	0.85	-1.5
1,055,293	+		EFB2_01023	0.85	+0.6
1,055,293	+		EFB2_01023	0.85	+1.6
1,055,293	+		EFB2_01023	0.85	+0.7
1,055,293	+		EFB2_01023	0.85	-2.8
1,055,294	-		EFB2_01023	0.85	-1.1
1,055,294	-		EFB2_01023	0.85	-1.6
1,055,294	-		EFB2_01023	0.85	+0.5
1,055,307	+		EFB2_01023	0.85	-0.5
1,055,308	-		EFB2_01023	0.85	+0.4
1,055,308	-		EFB2_01023	0.85	+0.2
1,055,320	+		EFB2_01023	0.86	+0.6
1,055,320	+		EFB2_01023	0.86	+1.5
1,055,320	+		EFB2_01023	0.86	+0.2
1,055,320	+		EFB2_01023	0.86	-0.0
1,055,320	+		EFB2_01023	0.86	+0.4
1,055,321	-		EFB2_01023	0.86	+1.0
1,055,321	-		EFB2_01023	0.86	-0.6
1,055,321	-		EFB2_01023	0.86	-0.5
1,055,321	-		EFB2_01023	0.86	+0.6
1,055,321	-		EFB2_01023	0.86	+0.3
1,055,321	-		EFB2_01023	0.86	-1.0
1,055,324	-		EFB2_01023	0.86	+0.2
1,055,324	-		EFB2_01023	0.86	-0.4
1,055,324	-		EFB2_01023	0.86	+2.1
1,055,339	-		EFB2_01023	0.86	-2.7
1,055,400	+		EFB2_01023	0.88	-0.8
1,055,401	-		EFB2_01023	0.88	-1.7
1,055,401	-		EFB2_01023	0.88	-0.1
1,055,401	-		EFB2_01023	0.88	-0.6
1,055,401	-		EFB2_01023	0.88	-1.3
1,055,416	+		EFB2_01023	0.89	-1.2
1,055,416	+		EFB2_01023	0.89	+1.0
1,055,416	+		EFB2_01023	0.89	-2.8
1,055,417	-		EFB2_01023	0.89	+0.5
1,055,426	-		EFB2_01023	0.89	-1.4
1,055,426	-		EFB2_01023	0.89	-0.2
1,055,449	+		EFB2_01023	0.90	-0.0
1,055,449	+		EFB2_01023	0.90	-0.7
1,055,450	-		EFB2_01023	0.90	+0.4
1,055,450	-		EFB2_01023	0.90	-0.3
1,055,641	+				-2.1
1,055,642	-				-0.4
1,055,642	-				-0.7
1,055,648	+				-0.4
1,055,658	+				-2.8
1,055,658	+				-0.9
1,055,658	+				-0.7
1,055,703	+				-0.5
1,055,703	+				+1.4
1,055,704	-				-0.4
1,055,704	-				-0.1
1,055,704	-				-0.1
1,055,704	-				-1.8
1,055,704	-				-2.2
1,055,704	-				-0.9
1,055,704	-				-1.8
1,055,714	+				-0.9
1,055,714	+				-1.2
1,055,714	+				+0.1
1,055,714	+				+0.7
1,055,714	+				-0.6
1,055,714	+				+1.2
1,055,715	-				-1.1
1,055,715	-				-0.2
1,055,715	-				+0.6
1,055,715	-				-1.6
1,055,715	-				-2.7
1,055,715	-				+0.6
1,055,715	-				-0.5
1,055,715	-				-0.2
1,055,752	+				-1.2
1,055,752	+				+2.4
1,055,752	+				-1.2
1,055,752	+				+1.6
1,055,752	+				+0.8
1,055,752	+				+0.7
1,055,752	+				-0.7
1,055,752	+				-2.3
1,055,753	-				-1.2
1,055,753	-				-1.6
1,055,753	-				-1.4
1,055,753	-				-2.6
1,055,753	-				-0.1
1,055,753	-				+1.8
1,055,755	+				-1.5
1,055,755	+				-2.0
1,055,755	+				+0.1
1,055,755	+				+1.2
1,055,756	-				-0.0
1,055,756	-				-0.1
1,055,776	+				-0.0
1,055,776	+				+1.7
1,055,776	+				+0.0
1,055,776	+				-2.2
1,055,776	+				+0.0
1,055,777	-				-0.3
1,055,777	-				-1.6
1,055,781	+				-0.5
1,055,781	+				-0.9
1,055,781	+				-0.2
1,055,781	+				-0.0
1,055,781	+				-0.8
1,055,781	+				-0.3
1,055,781	+				-1.5
1,055,781	+				-2.8
1,055,781	+				+0.4
1,055,781	+				+0.5
1,055,781	+				-1.6
1,055,781	+				+0.4
1,055,782	-				-3.4
1,055,782	-				-0.3
1,055,782	-				+1.3
1,055,782	-				+0.5
1,055,782	-				+1.1
1,055,782	-				+0.5
1,055,782	-				+1.0
1,055,782	-				-1.0
1,055,782	-				-1.0
1,055,783	+				-4.1
1,055,783	+				+0.2
1,055,783	+				-0.0
1,055,783	+				+0.9
1,055,783	+				+1.5
1,055,783	+				+1.7
1,055,783	+				+0.4
1,055,784	-				+1.9
1,055,784	-				-0.3
1,055,784	-				+2.4
1,055,784	-				-0.2
1,055,784	-				-0.3
1,055,784	-				+0.4
1,055,784	-				+1.3
1,055,784	-				-0.7
1,055,784	-				+1.2
1,055,784	-				+0.0
1,055,784	-				-0.6
1,055,784	-				-1.2
1,055,784	-				-1.4
1,055,784	-				+0.6
1,055,784	-				+1.3
1,055,784	-				+0.7
1,055,784	-				+0.2
1,055,784	-				-0.7
1,055,789	+				-2.0
1,055,789	+				-2.4
1,055,789	+				+0.5
1,055,789	+				-1.4
1,055,789	+				+1.0
1,055,790	-				+0.8
1,055,790	-				+1.5
1,055,790	-				-0.0
1,055,790	-				+0.1
1,055,790	-				+1.4
1,055,790	-				-0.4
1,055,790	-				-0.8
1,055,827	-				+1.7
1,055,876	+				-1.7
1,055,877	-				-1.3
1,055,877	-				+0.4
1,055,877	-				+0.5
1,055,879	-				-0.3
1,055,905	+				-2.2
1,055,986	-				-1.4
1,055,986	-				-0.0
1,056,022	+				-4.0
1,056,028	+				-0.5
1,056,029	-				+0.5
1,056,029	-				+1.1
1,056,029	-				+1.0
1,056,029	-				-3.2
1,056,034	-				-2.3
1,056,034	-				-1.4
1,056,052	+				+0.7
1,056,056	+				+2.0
1,056,079	-				+0.8
1,056,079	-				-1.5
1,056,100	-				+0.9
1,056,119	-				+1.5
1,056,140	-				+1.5
1,056,140	-				+0.9
1,056,144	-		EFB2_01024	0.10	-0.1
1,056,177	+		EFB2_01024	0.16	+0.8
1,056,177	+		EFB2_01024	0.16	-0.9
1,056,177	+		EFB2_01024	0.16	-2.2
1,056,178	-		EFB2_01024	0.16	-0.6
1,056,178	-		EFB2_01024	0.16	-0.7
1,056,178	-		EFB2_01024	0.16	+0.0
1,056,208	+		EFB2_01024	0.21	+1.9
1,056,209	-		EFB2_01024	0.21	+1.3
1,056,209	-		EFB2_01024	0.21	-2.9
1,056,286	+		EFB2_01024	0.35	-0.2
1,056,340	+		EFB2_01024	0.44	+1.2
1,056,361	+		EFB2_01024	0.47	-0.3
1,056,361	+		EFB2_01024	0.47	-0.9
1,056,362	-		EFB2_01024	0.48	+0.5
1,056,416	+		EFB2_01024	0.57	-0.5
1,056,416	+		EFB2_01024	0.57	-0.8
1,056,417	-		EFB2_01024	0.57	+0.3
1,056,429	-		EFB2_01024	0.59	-1.1
1,056,441	+		EFB2_01024	0.61	-1.1
1,056,441	+		EFB2_01024	0.61	-0.4
1,056,457	+		EFB2_01024	0.64	-0.5
1,056,460	+		EFB2_01024	0.65	-1.6
1,056,460	+		EFB2_01024	0.65	-1.9
1,056,460	+		EFB2_01024	0.65	-0.8
1,056,460	+		EFB2_01024	0.65	-3.4
1,056,460	+		EFB2_01024	0.65	-0.4
1,056,460	+		EFB2_01024	0.65	+0.7
1,056,461	-		EFB2_01024	0.65	+1.3
1,056,461	-		EFB2_01024	0.65	-0.2
1,056,461	-		EFB2_01024	0.65	-0.1
1,056,467	-		EFB2_01024	0.66	-2.5
1,056,467	-		EFB2_01024	0.66	-0.6
1,056,484	-		EFB2_01024	0.69	-0.5
1,056,502	+		EFB2_01024	0.72	+0.8
1,056,502	+		EFB2_01024	0.72	+1.2
1,056,503	-		EFB2_01024	0.72	+0.6
1,056,521	+		EFB2_01024	0.75	-2.4
1,056,526	+		EFB2_01024	0.76	+1.0
1,056,527	-		EFB2_01024	0.76	-1.5
1,056,559	+		EFB2_01024	0.82	-2.8
1,056,559	+		EFB2_01024	0.82	-0.3
1,056,565	+		EFB2_01024	0.83	-0.8
1,056,565	+		EFB2_01024	0.83	+0.4
1,056,566	-		EFB2_01024	0.83	-0.2
1,056,566	-		EFB2_01024	0.83	+4.6
1,056,626	+				+0.1
1,056,640	+				+1.6
1,056,644	+				-2.6
1,056,645	-				-0.9
1,056,645	-				-0.3
1,056,645	-				-0.8
1,056,645	-				+0.1
1,056,645	-				+3.6
1,056,645	-				-2.5
1,056,645	-				-0.4
1,056,645	-				+0.1
1,056,646	+				+0.7
1,056,646	+				-2.1
1,056,646	+				+0.3
1,056,646	+				-1.2
1,056,646	+				+1.7
1,056,646	+				-3.5
1,056,646	+				+0.0
1,056,646	+				+0.3
1,056,646	+				+0.3
1,056,647	-				+0.9
1,056,647	-				-0.3
1,056,647	-				-0.9
1,056,647	-				-0.4
1,056,647	-				-1.0
1,056,647	-				-0.6
1,056,647	-				-0.5
1,056,664	+				+1.0
1,056,664	+				-0.5
1,056,665	-				-1.8
1,056,665	-				-0.2
1,056,676	+				+0.3
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1,057,548	+				+0.5
1,057,549	-				-1.2
1,057,558	+				+0.5
1,057,585	+				-1.5
1,057,585	+				-2.0
1,057,585	+				-0.3
1,057,586	-				+0.1
1,057,591	+				+0.6
1,057,592	-				-1.2
1,057,592	-				+0.8