Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05294 and BACOVA_05295 are separated by 112 nucleotides BACOVA_05295 and BACOVA_05296 are separated by 58 nucleotides BACOVA_05296 and BACOVA_05297 overlap by 13 nucleotides BACOVA_05297 and BACOVA_05298 are separated by 56 nucleotides BACOVA_05298 and BACOVA_05299 are separated by 118 nucleotides
BACOVA_05294: BACOVA_05294 - TIGR01777 family protein, at 786,850 to 788,163
_05294
BACOVA_05295: BACOVA_05295 - hypothetical protein, at 788,276 to 788,542
_05295
BACOVA_05296: BACOVA_05296 - hypothetical protein, at 788,601 to 788,819
_05296
BACOVA_05297: BACOVA_05297 - Virulence-associated protein D (VapD) conserved region, at 788,807 to 789,091
_05297
BACOVA_05298: BACOVA_05298 - hypothetical protein, at 789,148 to 789,417
_05298
BACOVA_05299: BACOVA_05299 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 789,536 to 790,267
_05299
Position (kb) 788
789
790 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 787.812 kb on + strand, within BACOVA_05294 at 787.812 kb on + strand, within BACOVA_05294 at 787.817 kb on - strand, within BACOVA_05294 at 787.879 kb on + strand, within BACOVA_05294 at 787.880 kb on - strand, within BACOVA_05294 at 787.917 kb on - strand, within BACOVA_05294 at 787.981 kb on + strand, within BACOVA_05294 at 787.981 kb on + strand, within BACOVA_05294 at 788.015 kb on - strand, within BACOVA_05294 at 788.035 kb on - strand at 788.040 kb on + strand at 788.044 kb on + strand at 788.045 kb on - strand at 788.045 kb on - strand at 788.045 kb on - strand at 788.057 kb on + strand at 788.058 kb on - strand at 788.058 kb on - strand at 788.130 kb on + strand at 788.175 kb on + strand at 788.175 kb on + strand at 788.175 kb on + strand at 788.175 kb on + strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.180 kb on - strand at 788.180 kb on - strand at 788.180 kb on - strand at 788.181 kb on + strand at 788.181 kb on + strand at 788.190 kb on - strand at 788.207 kb on + strand at 788.214 kb on + strand at 788.216 kb on + strand at 788.217 kb on - strand at 788.239 kb on + strand at 788.291 kb on - strand at 788.328 kb on + strand, within BACOVA_05295 at 788.350 kb on - strand, within BACOVA_05295 at 788.365 kb on - strand, within BACOVA_05295 at 788.381 kb on - strand, within BACOVA_05295 at 788.451 kb on - strand, within BACOVA_05295 at 788.463 kb on + strand, within BACOVA_05295 at 788.464 kb on - strand, within BACOVA_05295 at 788.499 kb on - strand, within BACOVA_05295 at 788.540 kb on + strand at 788.541 kb on - strand at 788.577 kb on + strand at 788.580 kb on + strand at 788.681 kb on - strand, within BACOVA_05296 at 788.791 kb on + strand, within BACOVA_05296 at 788.806 kb on + strand at 788.806 kb on + strand at 788.806 kb on + strand at 788.807 kb on - strand at 788.807 kb on - strand at 788.807 kb on - strand at 788.810 kb on + strand at 788.817 kb on + strand at 788.818 kb on - strand at 788.827 kb on + strand at 788.827 kb on + strand at 788.837 kb on - strand, within BACOVA_05297 at 788.868 kb on - strand, within BACOVA_05297 at 788.869 kb on + strand, within BACOVA_05297 at 788.879 kb on + strand, within BACOVA_05297 at 788.890 kb on - strand, within BACOVA_05297 at 788.890 kb on - strand, within BACOVA_05297 at 788.920 kb on + strand, within BACOVA_05297 at 788.937 kb on + strand, within BACOVA_05297 at 788.937 kb on + strand, within BACOVA_05297 at 788.943 kb on + strand, within BACOVA_05297 at 788.959 kb on + strand, within BACOVA_05297 at 789.072 kb on + strand at 789.073 kb on + strand at 789.090 kb on - strand at 789.093 kb on + strand at 789.093 kb on + strand at 789.094 kb on - strand at 789.115 kb on + strand at 789.215 kb on + strand, within BACOVA_05298 at 789.215 kb on + strand, within BACOVA_05298 at 789.234 kb on + strand, within BACOVA_05298 at 789.261 kb on + strand, within BACOVA_05298 at 789.285 kb on + strand, within BACOVA_05298 at 789.285 kb on + strand, within BACOVA_05298 at 789.286 kb on - strand, within BACOVA_05298 at 789.286 kb on - strand, within BACOVA_05298 at 789.321 kb on - strand, within BACOVA_05298 at 789.329 kb on + strand, within BACOVA_05298 at 789.346 kb on - strand, within BACOVA_05298 at 789.388 kb on - strand, within BACOVA_05298 at 789.435 kb on + strand at 789.441 kb on + strand at 789.470 kb on - strand at 789.502 kb on - strand at 789.509 kb on + strand at 789.626 kb on + strand, within BACOVA_05299 at 789.626 kb on + strand, within BACOVA_05299 at 789.627 kb on - strand, within BACOVA_05299 at 789.699 kb on + strand, within BACOVA_05299 at 789.754 kb on + strand, within BACOVA_05299 at 789.781 kb on - strand, within BACOVA_05299 at 789.803 kb on + strand, within BACOVA_05299 at 789.803 kb on + strand, within BACOVA_05299 at 789.803 kb on + strand, within BACOVA_05299 at 789.803 kb on + strand, within BACOVA_05299 at 789.804 kb on - strand, within BACOVA_05299 at 789.804 kb on - strand, within BACOVA_05299 at 789.804 kb on - strand, within BACOVA_05299 at 789.804 kb on - strand, within BACOVA_05299 at 789.807 kb on + strand, within BACOVA_05299 at 789.808 kb on - strand, within BACOVA_05299 at 789.808 kb on - strand, within BACOVA_05299 at 789.838 kb on - strand, within BACOVA_05299 at 789.838 kb on - strand, within BACOVA_05299 at 789.918 kb on + strand, within BACOVA_05299 at 789.956 kb on + strand, within BACOVA_05299 at 789.957 kb on - strand, within BACOVA_05299 at 789.966 kb on + strand, within BACOVA_05299 at 789.967 kb on - strand, within BACOVA_05299 at 789.967 kb on - strand, within BACOVA_05299 at 790.003 kb on + strand, within BACOVA_05299 at 790.004 kb on - strand, within BACOVA_05299
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 787,812 + BACOVA_05294 0.73 -1.9 787,812 + BACOVA_05294 0.73 +0.5 787,817 - BACOVA_05294 0.74 +1.0 787,879 + BACOVA_05294 0.78 +0.2 787,880 - BACOVA_05294 0.78 +0.5 787,917 - BACOVA_05294 0.81 -0.0 787,981 + BACOVA_05294 0.86 -1.5 787,981 + BACOVA_05294 0.86 -0.7 788,015 - BACOVA_05294 0.89 -0.9 788,035 - -1.7 788,040 + +0.9 788,044 + -0.7 788,045 - +0.4 788,045 - +0.2 788,045 - -0.3 788,057 + -0.7 788,058 - +0.2 788,058 - -1.8 788,130 + +0.1 788,175 + -1.2 788,175 + +0.6 788,175 + -1.2 788,175 + -0.8 788,176 - -0.2 788,176 - -0.1 788,176 - -0.4 788,176 - -0.6 788,176 - -0.0 788,176 - +0.4 788,180 - -0.5 788,180 - +1.0 788,180 - -0.4 788,181 + -0.4 788,181 + -0.2 788,190 - -0.5 788,207 + -0.0 788,214 + -0.6 788,216 + -1.0 788,217 - +0.3 788,239 + -1.0 788,291 - +0.1 788,328 + BACOVA_05295 0.19 -0.7 788,350 - BACOVA_05295 0.28 -1.2 788,365 - BACOVA_05295 0.33 -0.7 788,381 - BACOVA_05295 0.39 -0.9 788,451 - BACOVA_05295 0.66 -1.5 788,463 + BACOVA_05295 0.70 -1.5 788,464 - BACOVA_05295 0.70 +0.2 788,499 - BACOVA_05295 0.84 -1.0 788,540 + -0.2 788,541 - -0.7 788,577 + -1.0 788,580 + -1.4 788,681 - BACOVA_05296 0.37 -1.0 788,791 + BACOVA_05296 0.87 -1.0 788,806 + -0.7 788,806 + -0.2 788,806 + +1.0 788,807 - +0.4 788,807 - +1.2 788,807 - -0.5 788,810 + +1.5 788,817 + -0.2 788,818 - -4.4 788,827 + -0.2 788,827 + +0.2 788,837 - BACOVA_05297 0.11 -0.4 788,868 - BACOVA_05297 0.21 +0.9 788,869 + BACOVA_05297 0.22 -0.4 788,879 + BACOVA_05297 0.25 +0.4 788,890 - BACOVA_05297 0.29 +0.9 788,890 - BACOVA_05297 0.29 -1.4 788,920 + BACOVA_05297 0.40 -2.0 788,937 + BACOVA_05297 0.46 -0.4 788,937 + BACOVA_05297 0.46 -0.3 788,943 + BACOVA_05297 0.48 +0.3 788,959 + BACOVA_05297 0.53 +0.4 789,072 + +0.8 789,073 + -0.2 789,090 - +0.6 789,093 + -0.7 789,093 + +0.0 789,094 - +0.5 789,115 + -0.4 789,215 + BACOVA_05298 0.25 +0.4 789,215 + BACOVA_05298 0.25 +0.2 789,234 + BACOVA_05298 0.32 -0.4 789,261 + BACOVA_05298 0.42 -0.5 789,285 + BACOVA_05298 0.51 +1.4 789,285 + BACOVA_05298 0.51 -0.5 789,286 - BACOVA_05298 0.51 -1.0 789,286 - BACOVA_05298 0.51 +0.5 789,321 - BACOVA_05298 0.64 -0.1 789,329 + BACOVA_05298 0.67 +0.5 789,346 - BACOVA_05298 0.73 -1.5 789,388 - BACOVA_05298 0.89 +0.8 789,435 + +0.5 789,441 + -0.9 789,470 - +0.6 789,502 - +1.3 789,509 + +0.4 789,626 + BACOVA_05299 0.12 +0.2 789,626 + BACOVA_05299 0.12 +0.2 789,627 - BACOVA_05299 0.12 -0.1 789,699 + BACOVA_05299 0.22 -0.1 789,754 + BACOVA_05299 0.30 +1.0 789,781 - BACOVA_05299 0.33 -1.7 789,803 + BACOVA_05299 0.36 +0.1 789,803 + BACOVA_05299 0.36 -2.1 789,803 + BACOVA_05299 0.36 -0.2 789,803 + BACOVA_05299 0.36 -0.9 789,804 - BACOVA_05299 0.37 +1.4 789,804 - BACOVA_05299 0.37 -0.3 789,804 - BACOVA_05299 0.37 +0.3 789,804 - BACOVA_05299 0.37 -1.0 789,807 + BACOVA_05299 0.37 +0.0 789,808 - BACOVA_05299 0.37 -0.1 789,808 - BACOVA_05299 0.37 +0.1 789,838 - BACOVA_05299 0.41 +0.1 789,838 - BACOVA_05299 0.41 +0.6 789,918 + BACOVA_05299 0.52 -0.2 789,956 + BACOVA_05299 0.57 -0.2 789,957 - BACOVA_05299 0.58 +0.9 789,966 + BACOVA_05299 0.59 -1.2 789,967 - BACOVA_05299 0.59 +0.4 789,967 - BACOVA_05299 0.59 -0.1 790,003 + BACOVA_05299 0.64 +1.8 790,004 - BACOVA_05299 0.64 -1.1
Or see this region's nucleotide sequence