Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05168

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_05166 and BACOVA_05167 are separated by 27 nucleotidesBACOVA_05167 and BACOVA_05168 are separated by 105 nucleotidesBACOVA_05168 and BACOVA_05169 are separated by 12 nucleotidesBACOVA_05169 and BACOVA_05170 overlap by 97 nucleotides BACOVA_05166: BACOVA_05166 - hypothetical protein, at 653,479 to 653,859 _05166 BACOVA_05167: BACOVA_05167 - hypothetical protein, at 653,887 to 654,354 _05167 BACOVA_05168: BACOVA_05168 - MazG family protein, at 654,460 to 655,248 _05168 BACOVA_05169: BACOVA_05169 - hypothetical protein, at 655,261 to 656,244 _05169 BACOVA_05170: BACOVA_05170 - hypothetical protein, at 656,148 to 656,315 _05170 Position (kb) 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2at 653.499 kb on - strandat 653.546 kb on - strand, within BACOVA_05166at 653.607 kb on + strand, within BACOVA_05166at 653.653 kb on + strand, within BACOVA_05166at 653.653 kb on + strand, within BACOVA_05166at 653.653 kb on + strand, within BACOVA_05166at 653.655 kb on + strand, within BACOVA_05166at 653.754 kb on + strand, within BACOVA_05166at 653.769 kb on - strand, within BACOVA_05166at 653.822 kb on - strandat 653.825 kb on + strandat 653.834 kb on - strandat 653.834 kb on - strandat 653.834 kb on - strandat 653.852 kb on + strandat 653.853 kb on - strandat 653.862 kb on + strandat 653.898 kb on + strandat 653.918 kb on + strandat 653.919 kb on - strandat 653.919 kb on - strandat 653.919 kb on - strandat 653.919 kb on - strandat 653.928 kb on + strandat 653.929 kb on - strandat 653.929 kb on - strandat 654.135 kb on + strand, within BACOVA_05167at 654.154 kb on + strand, within BACOVA_05167at 654.217 kb on + strand, within BACOVA_05167at 654.218 kb on - strand, within BACOVA_05167at 654.303 kb on - strand, within BACOVA_05167at 654.414 kb on + strandat 654.427 kb on + strandat 654.462 kb on - strandat 654.516 kb on + strandat 654.517 kb on - strandat 654.560 kb on + strand, within BACOVA_05168at 654.560 kb on + strand, within BACOVA_05168at 654.721 kb on + strand, within BACOVA_05168at 654.775 kb on + strand, within BACOVA_05168at 654.803 kb on + strand, within BACOVA_05168at 654.814 kb on - strand, within BACOVA_05168at 654.847 kb on + strand, within BACOVA_05168at 654.847 kb on + strand, within BACOVA_05168at 654.847 kb on + strand, within BACOVA_05168at 654.848 kb on - strand, within BACOVA_05168at 654.848 kb on - strand, within BACOVA_05168at 654.848 kb on - strand, within BACOVA_05168at 654.848 kb on - strand, within BACOVA_05168at 654.855 kb on + strand, within BACOVA_05168at 654.856 kb on - strand, within BACOVA_05168at 655.023 kb on + strand, within BACOVA_05168at 655.023 kb on + strand, within BACOVA_05168at 655.023 kb on + strand, within BACOVA_05168at 655.024 kb on - strand, within BACOVA_05168at 655.028 kb on + strand, within BACOVA_05168at 655.048 kb on + strand, within BACOVA_05168at 655.048 kb on + strand, within BACOVA_05168at 655.049 kb on - strand, within BACOVA_05168at 655.113 kb on - strand, within BACOVA_05168at 655.123 kb on + strand, within BACOVA_05168at 655.123 kb on + strand, within BACOVA_05168at 655.248 kb on + strandat 655.248 kb on + strandat 655.249 kb on - strandat 655.249 kb on - strandat 655.291 kb on + strandat 655.303 kb on + strandat 655.304 kb on - strandat 655.307 kb on - strandat 655.336 kb on + strandat 655.336 kb on + strandat 655.364 kb on + strand, within BACOVA_05169at 655.366 kb on + strand, within BACOVA_05169at 655.401 kb on - strand, within BACOVA_05169at 655.401 kb on - strand, within BACOVA_05169at 655.416 kb on - strand, within BACOVA_05169at 655.416 kb on - strand, within BACOVA_05169at 655.478 kb on + strand, within BACOVA_05169at 655.538 kb on + strand, within BACOVA_05169at 655.621 kb on - strand, within BACOVA_05169at 655.624 kb on + strand, within BACOVA_05169at 655.625 kb on - strand, within BACOVA_05169at 655.650 kb on - strand, within BACOVA_05169at 655.650 kb on - strand, within BACOVA_05169at 655.650 kb on - strand, within BACOVA_05169at 655.662 kb on - strand, within BACOVA_05169at 655.732 kb on + strand, within BACOVA_05169at 655.810 kb on - strand, within BACOVA_05169at 655.849 kb on + strand, within BACOVA_05169at 655.894 kb on + strand, within BACOVA_05169at 655.895 kb on - strand, within BACOVA_05169at 655.905 kb on + strand, within BACOVA_05169at 655.906 kb on - strand, within BACOVA_05169at 655.908 kb on - strand, within BACOVA_05169at 655.944 kb on - strand, within BACOVA_05169at 655.950 kb on + strand, within BACOVA_05169at 655.951 kb on + strand, within BACOVA_05169at 655.991 kb on + strand, within BACOVA_05169at 656.012 kb on + strand, within BACOVA_05169at 656.020 kb on + strand, within BACOVA_05169at 656.021 kb on - strand, within BACOVA_05169at 656.024 kb on + strand, within BACOVA_05169at 656.024 kb on + strand, within BACOVA_05169at 656.082 kb on + strand, within BACOVA_05169at 656.097 kb on - strand, within BACOVA_05169at 656.097 kb on - strand, within BACOVA_05169at 656.109 kb on + strand, within BACOVA_05169at 656.127 kb on + strand, within BACOVA_05169at 656.127 kb on + strand, within BACOVA_05169at 656.128 kb on - strand, within BACOVA_05169at 656.128 kb on - strand, within BACOVA_05169at 656.137 kb on - strand, within BACOVA_05169at 656.137 kb on - strand, within BACOVA_05169at 656.140 kb on + strand, within BACOVA_05169at 656.141 kb on - strand, within BACOVA_05169at 656.141 kb on - strand, within BACOVA_05169at 656.164 kb on + strandat 656.204 kb on - strandat 656.219 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
remove
653,499 - -0.5
653,546 - BACOVA_05166 0.18 -0.8
653,607 + BACOVA_05166 0.34 +1.1
653,653 + BACOVA_05166 0.46 +0.4
653,653 + BACOVA_05166 0.46 -2.0
653,653 + BACOVA_05166 0.46 -1.5
653,655 + BACOVA_05166 0.46 -0.4
653,754 + BACOVA_05166 0.72 -0.9
653,769 - BACOVA_05166 0.76 -0.5
653,822 - +1.8
653,825 + -0.2
653,834 - -0.8
653,834 - -0.2
653,834 - -0.2
653,852 + -0.7
653,853 - -0.7
653,862 + +0.3
653,898 + -1.5
653,918 + +1.8
653,919 - +0.2
653,919 - +0.4
653,919 - -0.8
653,919 - +0.7
653,928 + -0.9
653,929 - -0.0
653,929 - -0.4
654,135 + BACOVA_05167 0.53 -0.1
654,154 + BACOVA_05167 0.57 +0.1
654,217 + BACOVA_05167 0.71 -0.1
654,218 - BACOVA_05167 0.71 -0.8
654,303 - BACOVA_05167 0.89 +0.5
654,414 + -0.4
654,427 + -0.4
654,462 - +1.8
654,516 + +0.5
654,517 - -0.5
654,560 + BACOVA_05168 0.13 -0.7
654,560 + BACOVA_05168 0.13 +0.1
654,721 + BACOVA_05168 0.33 -0.3
654,775 + BACOVA_05168 0.40 -2.2
654,803 + BACOVA_05168 0.43 -0.4
654,814 - BACOVA_05168 0.45 -0.2
654,847 + BACOVA_05168 0.49 -0.1
654,847 + BACOVA_05168 0.49 -1.5
654,847 + BACOVA_05168 0.49 -0.2
654,848 - BACOVA_05168 0.49 +0.8
654,848 - BACOVA_05168 0.49 -2.5
654,848 - BACOVA_05168 0.49 +0.0
654,848 - BACOVA_05168 0.49 +0.7
654,855 + BACOVA_05168 0.50 -1.1
654,856 - BACOVA_05168 0.50 +0.6
655,023 + BACOVA_05168 0.71 -0.1
655,023 + BACOVA_05168 0.71 +0.4
655,023 + BACOVA_05168 0.71 +1.2
655,024 - BACOVA_05168 0.71 +0.4
655,028 + BACOVA_05168 0.72 -0.0
655,048 + BACOVA_05168 0.75 -0.3
655,048 + BACOVA_05168 0.75 +0.0
655,049 - BACOVA_05168 0.75 -2.1
655,113 - BACOVA_05168 0.83 +0.4
655,123 + BACOVA_05168 0.84 -1.5
655,123 + BACOVA_05168 0.84 -0.7
655,248 + +0.5
655,248 + +1.1
655,249 - -0.1
655,249 - +0.4
655,291 + -0.8
655,303 + -0.1
655,304 - -0.1
655,307 - +0.2
655,336 + +0.5
655,336 + +0.1
655,364 + BACOVA_05169 0.10 -0.0
655,366 + BACOVA_05169 0.11 +0.5
655,401 - BACOVA_05169 0.14 -0.4
655,401 - BACOVA_05169 0.14 +0.3
655,416 - BACOVA_05169 0.16 -1.4
655,416 - BACOVA_05169 0.16 -1.0
655,478 + BACOVA_05169 0.22 +0.0
655,538 + BACOVA_05169 0.28 -0.8
655,621 - BACOVA_05169 0.37 +0.2
655,624 + BACOVA_05169 0.37 +0.0
655,625 - BACOVA_05169 0.37 -0.8
655,650 - BACOVA_05169 0.40 +0.1
655,650 - BACOVA_05169 0.40 -1.2
655,650 - BACOVA_05169 0.40 -0.1
655,662 - BACOVA_05169 0.41 -0.4
655,732 + BACOVA_05169 0.48 -0.2
655,810 - BACOVA_05169 0.56 -0.2
655,849 + BACOVA_05169 0.60 +0.4
655,894 + BACOVA_05169 0.64 +0.0
655,895 - BACOVA_05169 0.64 -0.3
655,905 + BACOVA_05169 0.65 +0.3
655,906 - BACOVA_05169 0.66 -0.1
655,908 - BACOVA_05169 0.66 -0.2
655,944 - BACOVA_05169 0.69 -1.1
655,950 + BACOVA_05169 0.70 +0.1
655,951 + BACOVA_05169 0.70 -1.1
655,991 + BACOVA_05169 0.74 -1.0
656,012 + BACOVA_05169 0.76 +0.8
656,020 + BACOVA_05169 0.77 +0.9
656,021 - BACOVA_05169 0.77 -0.3
656,024 + BACOVA_05169 0.78 -0.1
656,024 + BACOVA_05169 0.78 -0.1
656,082 + BACOVA_05169 0.83 -0.6
656,097 - BACOVA_05169 0.85 -0.7
656,097 - BACOVA_05169 0.85 +0.5
656,109 + BACOVA_05169 0.86 +0.1
656,127 + BACOVA_05169 0.88 -0.9
656,127 + BACOVA_05169 0.88 +1.4
656,128 - BACOVA_05169 0.88 -0.3
656,128 - BACOVA_05169 0.88 -0.1
656,137 - BACOVA_05169 0.89 -0.2
656,137 - BACOVA_05169 0.89 -0.2
656,140 + BACOVA_05169 0.89 -2.0
656,141 - BACOVA_05169 0.89 +0.0
656,141 - BACOVA_05169 0.89 +0.4
656,164 + -1.0
656,204 - -0.5
656,219 - -0.4

Or see this region's nucleotide sequence