Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04296 and BACOVA_04297 are separated by 130 nucleotides BACOVA_04297 and BACOVA_04298 are separated by 148 nucleotides
BACOVA_04296: BACOVA_04296 - hypothetical protein, at 188,545 to 189,228
_04296
BACOVA_04297: BACOVA_04297 - alanine dehydrogenase, at 189,359 to 190,465
_04297
BACOVA_04298: BACOVA_04298 - oxidoreductase, 2-nitropropane dioxygenase family protein, at 190,614 to 191,552
_04298
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 188.408 kb on + strand at 188.409 kb on - strand at 188.410 kb on + strand at 188.410 kb on + strand at 188.411 kb on - strand at 188.500 kb on + strand at 188.501 kb on - strand at 188.502 kb on + strand at 188.502 kb on + strand at 188.502 kb on + strand at 188.503 kb on - strand at 188.503 kb on - strand at 188.504 kb on + strand at 188.504 kb on + strand at 188.504 kb on + strand at 188.505 kb on - strand at 188.505 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.543 kb on + strand at 188.543 kb on + strand at 188.556 kb on + strand at 188.556 kb on + strand at 188.559 kb on + strand at 188.560 kb on - strand at 188.560 kb on - strand at 188.582 kb on + strand at 188.595 kb on - strand at 188.598 kb on + strand at 188.601 kb on + strand at 188.677 kb on + strand, within BACOVA_04296 at 188.677 kb on + strand, within BACOVA_04296 at 188.683 kb on - strand, within BACOVA_04296 at 188.685 kb on + strand, within BACOVA_04296 at 188.686 kb on - strand, within BACOVA_04296 at 188.686 kb on - strand, within BACOVA_04296 at 188.716 kb on + strand, within BACOVA_04296 at 188.747 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.815 kb on - strand, within BACOVA_04296 at 188.858 kb on + strand, within BACOVA_04296 at 188.858 kb on + strand, within BACOVA_04296 at 188.859 kb on - strand, within BACOVA_04296 at 188.902 kb on + strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.951 kb on + strand, within BACOVA_04296 at 188.979 kb on - strand, within BACOVA_04296 at 188.991 kb on + strand, within BACOVA_04296 at 188.992 kb on - strand, within BACOVA_04296 at 188.992 kb on - strand, within BACOVA_04296 at 189.098 kb on + strand, within BACOVA_04296 at 189.108 kb on + strand, within BACOVA_04296 at 189.109 kb on - strand, within BACOVA_04296 at 189.109 kb on - strand, within BACOVA_04296 at 189.109 kb on - strand, within BACOVA_04296 at 189.119 kb on + strand, within BACOVA_04296 at 189.120 kb on - strand, within BACOVA_04296 at 189.129 kb on + strand, within BACOVA_04296 at 189.155 kb on - strand, within BACOVA_04296 at 189.165 kb on - strand at 189.165 kb on - strand at 189.307 kb on + strand at 189.308 kb on - strand at 189.337 kb on + strand at 189.372 kb on + strand at 189.405 kb on + strand at 189.405 kb on + strand at 189.438 kb on + strand at 189.456 kb on + strand at 189.470 kb on - strand, within BACOVA_04297 at 189.480 kb on + strand, within BACOVA_04297 at 189.481 kb on - strand, within BACOVA_04297 at 189.526 kb on + strand, within BACOVA_04297 at 189.526 kb on + strand, within BACOVA_04297 at 189.527 kb on - strand, within BACOVA_04297 at 189.540 kb on + strand, within BACOVA_04297 at 189.540 kb on + strand, within BACOVA_04297 at 189.540 kb on + strand, within BACOVA_04297 at 189.541 kb on - strand, within BACOVA_04297 at 189.541 kb on - strand, within BACOVA_04297 at 189.547 kb on + strand, within BACOVA_04297 at 189.551 kb on + strand, within BACOVA_04297 at 189.551 kb on + strand, within BACOVA_04297 at 189.627 kb on + strand, within BACOVA_04297 at 189.628 kb on - strand, within BACOVA_04297 at 189.630 kb on + strand, within BACOVA_04297 at 189.697 kb on - strand, within BACOVA_04297 at 189.717 kb on + strand, within BACOVA_04297 at 189.775 kb on + strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.776 kb on - strand, within BACOVA_04297 at 189.846 kb on + strand, within BACOVA_04297 at 189.847 kb on - strand, within BACOVA_04297 at 189.847 kb on - strand, within BACOVA_04297 at 189.871 kb on - strand, within BACOVA_04297 at 189.894 kb on + strand, within BACOVA_04297 at 189.895 kb on - strand, within BACOVA_04297 at 190.002 kb on + strand, within BACOVA_04297 at 190.002 kb on + strand, within BACOVA_04297 at 190.003 kb on - strand, within BACOVA_04297 at 190.013 kb on + strand, within BACOVA_04297 at 190.013 kb on + strand, within BACOVA_04297 at 190.014 kb on - strand, within BACOVA_04297 at 190.059 kb on + strand, within BACOVA_04297 at 190.090 kb on + strand, within BACOVA_04297 at 190.147 kb on - strand, within BACOVA_04297 at 190.149 kb on + strand, within BACOVA_04297 at 190.150 kb on - strand, within BACOVA_04297 at 190.150 kb on - strand, within BACOVA_04297 at 190.152 kb on + strand, within BACOVA_04297 at 190.153 kb on - strand, within BACOVA_04297 at 190.158 kb on + strand, within BACOVA_04297 at 190.158 kb on + strand, within BACOVA_04297 at 190.220 kb on + strand, within BACOVA_04297 at 190.220 kb on + strand, within BACOVA_04297 at 190.227 kb on + strand, within BACOVA_04297 at 190.227 kb on + strand, within BACOVA_04297 at 190.227 kb on + strand, within BACOVA_04297 at 190.227 kb on + strand, within BACOVA_04297 at 190.244 kb on + strand, within BACOVA_04297 at 190.252 kb on - strand, within BACOVA_04297 at 190.256 kb on - strand, within BACOVA_04297 at 190.278 kb on - strand, within BACOVA_04297 at 190.307 kb on - strand, within BACOVA_04297 at 190.317 kb on - strand, within BACOVA_04297 at 190.375 kb on - strand at 190.414 kb on + strand at 190.415 kb on - strand at 190.454 kb on - strand at 190.463 kb on + strand at 190.463 kb on + strand at 190.463 kb on + strand at 190.464 kb on - strand at 190.464 kb on - strand at 190.483 kb on - strand at 190.483 kb on - strand at 190.524 kb on + strand at 190.524 kb on + strand at 190.543 kb on + strand at 190.544 kb on - strand at 190.589 kb on + strand at 190.592 kb on + strand at 190.593 kb on - strand at 190.607 kb on + strand at 190.615 kb on + strand at 190.672 kb on - strand at 190.785 kb on + strand, within BACOVA_04298 at 190.786 kb on - strand, within BACOVA_04298 at 190.895 kb on + strand, within BACOVA_04298 at 190.898 kb on + strand, within BACOVA_04298 at 190.925 kb on - strand, within BACOVA_04298 at 190.981 kb on - strand, within BACOVA_04298 at 191.009 kb on + strand, within BACOVA_04298 at 191.020 kb on - strand, within BACOVA_04298 at 191.052 kb on + strand, within BACOVA_04298 at 191.310 kb on - strand, within BACOVA_04298 at 191.335 kb on + strand, within BACOVA_04298 at 191.335 kb on + strand, within BACOVA_04298 at 191.381 kb on + strand, within BACOVA_04298 at 191.388 kb on - strand, within BACOVA_04298 at 191.404 kb on - strand, within BACOVA_04298 at 191.434 kb on - strand, within BACOVA_04298
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 188,408 + -0.2 188,409 - -0.0 188,410 + -1.0 188,410 + +0.4 188,411 - -0.8 188,500 + -0.8 188,501 - -0.4 188,502 + +0.7 188,502 + -1.3 188,502 + -0.1 188,503 - -0.0 188,503 - +1.0 188,504 + -1.0 188,504 + -3.0 188,504 + +1.0 188,505 - +0.4 188,505 - -0.2 188,507 - -0.8 188,507 - -0.3 188,507 - +0.3 188,507 - -0.1 188,543 + -0.1 188,543 + -0.2 188,556 + -0.8 188,556 + +0.8 188,559 + +0.2 188,560 - +0.5 188,560 - -0.8 188,582 + +1.7 188,595 - -0.1 188,598 + +1.1 188,601 + +1.2 188,677 + BACOVA_04296 0.19 -1.8 188,677 + BACOVA_04296 0.19 +0.3 188,683 - BACOVA_04296 0.20 +0.7 188,685 + BACOVA_04296 0.20 +0.7 188,686 - BACOVA_04296 0.21 +0.3 188,686 - BACOVA_04296 0.21 -0.7 188,716 + BACOVA_04296 0.25 -1.0 188,747 + BACOVA_04296 0.30 -0.9 188,756 + BACOVA_04296 0.31 -1.1 188,756 + BACOVA_04296 0.31 -0.3 188,756 + BACOVA_04296 0.31 -0.7 188,815 - BACOVA_04296 0.39 -0.3 188,858 + BACOVA_04296 0.46 -1.3 188,858 + BACOVA_04296 0.46 -1.0 188,859 - BACOVA_04296 0.46 -0.1 188,902 + BACOVA_04296 0.52 +0.6 188,921 - BACOVA_04296 0.55 -0.8 188,921 - BACOVA_04296 0.55 -0.3 188,921 - BACOVA_04296 0.55 +0.4 188,951 + BACOVA_04296 0.59 -0.6 188,979 - BACOVA_04296 0.63 -2.0 188,991 + BACOVA_04296 0.65 +0.2 188,992 - BACOVA_04296 0.65 -0.1 188,992 - BACOVA_04296 0.65 +0.7 189,098 + BACOVA_04296 0.81 -0.0 189,108 + BACOVA_04296 0.82 +1.0 189,109 - BACOVA_04296 0.82 -0.2 189,109 - BACOVA_04296 0.82 -0.1 189,109 - BACOVA_04296 0.82 -1.1 189,119 + BACOVA_04296 0.84 -0.8 189,120 - BACOVA_04296 0.84 +0.1 189,129 + BACOVA_04296 0.85 -1.6 189,155 - BACOVA_04296 0.89 +0.2 189,165 - +0.7 189,165 - +0.9 189,307 + +0.0 189,308 - +0.8 189,337 + +0.1 189,372 + -0.2 189,405 + -0.5 189,405 + -0.2 189,438 + -1.3 189,456 + -1.3 189,470 - BACOVA_04297 0.10 +1.5 189,480 + BACOVA_04297 0.11 -0.5 189,481 - BACOVA_04297 0.11 +0.5 189,526 + BACOVA_04297 0.15 +0.6 189,526 + BACOVA_04297 0.15 -0.3 189,527 - BACOVA_04297 0.15 -0.7 189,540 + BACOVA_04297 0.16 +0.1 189,540 + BACOVA_04297 0.16 +1.3 189,540 + BACOVA_04297 0.16 +1.8 189,541 - BACOVA_04297 0.16 -0.4 189,541 - BACOVA_04297 0.16 -0.8 189,547 + BACOVA_04297 0.17 -2.2 189,551 + BACOVA_04297 0.17 -1.3 189,551 + BACOVA_04297 0.17 +0.6 189,627 + BACOVA_04297 0.24 -0.6 189,628 - BACOVA_04297 0.24 -0.8 189,630 + BACOVA_04297 0.24 -0.1 189,697 - BACOVA_04297 0.31 +0.6 189,717 + BACOVA_04297 0.32 +0.3 189,775 + BACOVA_04297 0.38 -0.3 189,776 - BACOVA_04297 0.38 +0.7 189,776 - BACOVA_04297 0.38 +0.3 189,776 - BACOVA_04297 0.38 -1.4 189,776 - BACOVA_04297 0.38 +0.2 189,776 - BACOVA_04297 0.38 +0.3 189,776 - BACOVA_04297 0.38 +1.5 189,776 - BACOVA_04297 0.38 -3.1 189,846 + BACOVA_04297 0.44 +0.3 189,847 - BACOVA_04297 0.44 +0.1 189,847 - BACOVA_04297 0.44 -0.3 189,871 - BACOVA_04297 0.46 -0.5 189,894 + BACOVA_04297 0.48 -1.1 189,895 - BACOVA_04297 0.48 +0.2 190,002 + BACOVA_04297 0.58 -0.7 190,002 + BACOVA_04297 0.58 +0.5 190,003 - BACOVA_04297 0.58 -1.0 190,013 + BACOVA_04297 0.59 +0.3 190,013 + BACOVA_04297 0.59 +0.2 190,014 - BACOVA_04297 0.59 +0.3 190,059 + BACOVA_04297 0.63 -0.0 190,090 + BACOVA_04297 0.66 -0.1 190,147 - BACOVA_04297 0.71 -1.0 190,149 + BACOVA_04297 0.71 +1.0 190,150 - BACOVA_04297 0.71 -0.1 190,150 - BACOVA_04297 0.71 +1.3 190,152 + BACOVA_04297 0.72 +0.6 190,153 - BACOVA_04297 0.72 -0.6 190,158 + BACOVA_04297 0.72 -0.8 190,158 + BACOVA_04297 0.72 -0.5 190,220 + BACOVA_04297 0.78 -0.5 190,220 + BACOVA_04297 0.78 -1.5 190,227 + BACOVA_04297 0.78 -0.3 190,227 + BACOVA_04297 0.78 +0.5 190,227 + BACOVA_04297 0.78 +0.0 190,227 + BACOVA_04297 0.78 +1.0 190,244 + BACOVA_04297 0.80 -0.7 190,252 - BACOVA_04297 0.81 -1.0 190,256 - BACOVA_04297 0.81 -0.0 190,278 - BACOVA_04297 0.83 +0.6 190,307 - BACOVA_04297 0.86 +0.5 190,317 - BACOVA_04297 0.87 -1.3 190,375 - +0.1 190,414 + +0.4 190,415 - -0.1 190,454 - +1.5 190,463 + +0.8 190,463 + -0.6 190,463 + -1.3 190,464 - -1.4 190,464 - -0.8 190,483 - -0.8 190,483 - -0.3 190,524 + -1.0 190,524 + -0.2 190,543 + +0.4 190,544 - -0.4 190,589 + +0.8 190,592 + +0.6 190,593 - -0.1 190,607 + -0.8 190,615 + +0.9 190,672 - -0.8 190,785 + BACOVA_04298 0.18 -0.6 190,786 - BACOVA_04298 0.18 -1.0 190,895 + BACOVA_04298 0.30 -0.4 190,898 + BACOVA_04298 0.30 +0.3 190,925 - BACOVA_04298 0.33 +0.6 190,981 - BACOVA_04298 0.39 +1.0 191,009 + BACOVA_04298 0.42 -1.6 191,020 - BACOVA_04298 0.43 -0.6 191,052 + BACOVA_04298 0.47 -2.3 191,310 - BACOVA_04298 0.74 +0.1 191,335 + BACOVA_04298 0.77 +0.4 191,335 + BACOVA_04298 0.77 +0.0 191,381 + BACOVA_04298 0.82 +0.3 191,388 - BACOVA_04298 0.82 -0.1 191,404 - BACOVA_04298 0.84 -2.0 191,434 - BACOVA_04298 0.87 -0.6
Or see this region's nucleotide sequence