Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04016

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04015 and BACOVA_04016 are separated by 117 nucleotidesBACOVA_04016 and BACOVA_04017 are separated by 137 nucleotides BACOVA_04015: BACOVA_04015 - hypothetical protein, at 346,877 to 348,994 _04015 BACOVA_04016: BACOVA_04016 - hypothetical protein, at 349,112 to 349,858 _04016 BACOVA_04017: BACOVA_04017 - hypothetical protein, at 349,996 to 351,267 _04017 Position (kb) 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 348.250 kb on - strand, within BACOVA_04015at 348.334 kb on + strand, within BACOVA_04015at 348.351 kb on + strand, within BACOVA_04015at 348.351 kb on + strand, within BACOVA_04015at 348.418 kb on - strand, within BACOVA_04015at 348.459 kb on + strand, within BACOVA_04015at 348.591 kb on + strand, within BACOVA_04015at 348.596 kb on - strand, within BACOVA_04015at 348.596 kb on - strand, within BACOVA_04015at 348.613 kb on - strand, within BACOVA_04015at 348.616 kb on - strand, within BACOVA_04015at 348.627 kb on + strand, within BACOVA_04015at 348.655 kb on + strand, within BACOVA_04015at 348.655 kb on + strand, within BACOVA_04015at 348.656 kb on - strand, within BACOVA_04015at 348.657 kb on + strand, within BACOVA_04015at 348.658 kb on - strand, within BACOVA_04015at 348.658 kb on - strand, within BACOVA_04015at 348.710 kb on + strand, within BACOVA_04015at 348.714 kb on - strand, within BACOVA_04015at 348.741 kb on - strand, within BACOVA_04015at 348.751 kb on - strand, within BACOVA_04015at 348.756 kb on + strand, within BACOVA_04015at 348.757 kb on - strand, within BACOVA_04015at 348.757 kb on - strand, within BACOVA_04015at 348.763 kb on - strand, within BACOVA_04015at 348.815 kb on + strandat 348.872 kb on - strandat 348.923 kb on - strandat 348.951 kb on - strandat 348.960 kb on + strandat 348.960 kb on + strandat 348.960 kb on + strandat 349.003 kb on + strandat 349.004 kb on - strandat 349.006 kb on - strandat 349.009 kb on - strandat 349.047 kb on - strandat 349.050 kb on - strandat 349.076 kb on + strandat 349.077 kb on - strandat 349.104 kb on + strandat 349.141 kb on + strandat 349.183 kb on + strandat 349.191 kb on + strand, within BACOVA_04016at 349.191 kb on + strand, within BACOVA_04016at 349.191 kb on + strand, within BACOVA_04016at 349.192 kb on - strand, within BACOVA_04016at 349.223 kb on - strand, within BACOVA_04016at 349.227 kb on - strand, within BACOVA_04016at 349.294 kb on + strand, within BACOVA_04016at 349.294 kb on + strand, within BACOVA_04016at 349.328 kb on + strand, within BACOVA_04016at 349.356 kb on + strand, within BACOVA_04016at 349.356 kb on + strand, within BACOVA_04016at 349.357 kb on - strand, within BACOVA_04016at 349.367 kb on - strand, within BACOVA_04016at 349.422 kb on - strand, within BACOVA_04016at 349.472 kb on + strand, within BACOVA_04016at 349.496 kb on + strand, within BACOVA_04016at 349.503 kb on + strand, within BACOVA_04016at 349.527 kb on + strand, within BACOVA_04016at 349.561 kb on - strand, within BACOVA_04016at 349.739 kb on + strand, within BACOVA_04016at 349.764 kb on - strand, within BACOVA_04016at 349.808 kb on - strandat 349.823 kb on + strandat 349.823 kb on + strandat 349.847 kb on - strandat 349.872 kb on + strandat 349.893 kb on - strandat 349.906 kb on - strandat 349.924 kb on + strandat 349.924 kb on + strandat 349.938 kb on + strandat 349.938 kb on + strandat 349.938 kb on + strandat 349.939 kb on - strandat 349.945 kb on + strandat 349.946 kb on - strandat 349.951 kb on - strandat 349.988 kb on - strandat 350.022 kb on - strandat 350.069 kb on - strandat 350.131 kb on + strand, within BACOVA_04017at 350.176 kb on + strand, within BACOVA_04017at 350.180 kb on + strand, within BACOVA_04017at 350.181 kb on - strand, within BACOVA_04017at 350.184 kb on + strand, within BACOVA_04017at 350.186 kb on - strand, within BACOVA_04017at 350.186 kb on - strand, within BACOVA_04017at 350.195 kb on - strand, within BACOVA_04017at 350.231 kb on - strand, within BACOVA_04017at 350.292 kb on - strand, within BACOVA_04017at 350.330 kb on + strand, within BACOVA_04017at 350.345 kb on - strand, within BACOVA_04017at 350.401 kb on + strand, within BACOVA_04017at 350.471 kb on + strand, within BACOVA_04017at 350.471 kb on + strand, within BACOVA_04017at 350.472 kb on - strand, within BACOVA_04017at 350.495 kb on + strand, within BACOVA_04017at 350.496 kb on - strand, within BACOVA_04017at 350.506 kb on - strand, within BACOVA_04017at 350.524 kb on - strand, within BACOVA_04017at 350.537 kb on + strand, within BACOVA_04017at 350.604 kb on + strand, within BACOVA_04017at 350.604 kb on + strand, within BACOVA_04017at 350.605 kb on - strand, within BACOVA_04017at 350.606 kb on + strand, within BACOVA_04017at 350.649 kb on + strand, within BACOVA_04017at 350.789 kb on + strand, within BACOVA_04017at 350.802 kb on - strand, within BACOVA_04017at 350.824 kb on - strand, within BACOVA_04017

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
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348,250 - BACOVA_04015 0.65 +1.7
348,334 + BACOVA_04015 0.69 -0.6
348,351 + BACOVA_04015 0.70 +0.9
348,351 + BACOVA_04015 0.70 +0.7
348,418 - BACOVA_04015 0.73 +0.3
348,459 + BACOVA_04015 0.75 -0.2
348,591 + BACOVA_04015 0.81 +0.8
348,596 - BACOVA_04015 0.81 +0.6
348,596 - BACOVA_04015 0.81 +0.7
348,613 - BACOVA_04015 0.82 -0.5
348,616 - BACOVA_04015 0.82 -0.4
348,627 + BACOVA_04015 0.83 -0.5
348,655 + BACOVA_04015 0.84 +0.1
348,655 + BACOVA_04015 0.84 +0.8
348,656 - BACOVA_04015 0.84 +0.6
348,657 + BACOVA_04015 0.84 -0.5
348,658 - BACOVA_04015 0.84 +2.2
348,658 - BACOVA_04015 0.84 -0.0
348,710 + BACOVA_04015 0.87 -0.5
348,714 - BACOVA_04015 0.87 +1.1
348,741 - BACOVA_04015 0.88 -0.4
348,751 - BACOVA_04015 0.88 +0.6
348,756 + BACOVA_04015 0.89 +0.7
348,757 - BACOVA_04015 0.89 +1.1
348,757 - BACOVA_04015 0.89 -1.5
348,763 - BACOVA_04015 0.89 +0.4
348,815 + -0.3
348,872 - -0.3
348,923 - +0.1
348,951 - -0.3
348,960 + -0.9
348,960 + +0.2
348,960 + -0.9
349,003 + +1.3
349,004 - +1.0
349,006 - +0.3
349,009 - +0.5
349,047 - +1.7
349,050 - +0.6
349,076 + -0.2
349,077 - +0.2
349,104 + +0.2
349,141 + +1.1
349,183 + +1.7
349,191 + BACOVA_04016 0.11 -0.6
349,191 + BACOVA_04016 0.11 +1.3
349,191 + BACOVA_04016 0.11 -0.0
349,192 - BACOVA_04016 0.11 -0.3
349,223 - BACOVA_04016 0.15 +0.7
349,227 - BACOVA_04016 0.15 -0.2
349,294 + BACOVA_04016 0.24 -0.1
349,294 + BACOVA_04016 0.24 -0.1
349,328 + BACOVA_04016 0.29 -0.1
349,356 + BACOVA_04016 0.33 +0.1
349,356 + BACOVA_04016 0.33 +0.1
349,357 - BACOVA_04016 0.33 +1.0
349,367 - BACOVA_04016 0.34 -0.4
349,422 - BACOVA_04016 0.41 -0.3
349,472 + BACOVA_04016 0.48 +1.1
349,496 + BACOVA_04016 0.51 +0.1
349,503 + BACOVA_04016 0.52 -1.5
349,527 + BACOVA_04016 0.56 +1.3
349,561 - BACOVA_04016 0.60 +2.3
349,739 + BACOVA_04016 0.84 +0.2
349,764 - BACOVA_04016 0.87 -0.5
349,808 - -3.7
349,823 + -0.7
349,823 + +0.5
349,847 - +1.5
349,872 + +1.0
349,893 - -0.3
349,906 - -0.3
349,924 + +0.3
349,924 + -1.0
349,938 + -0.5
349,938 + -0.8
349,938 + +1.0
349,939 - +0.2
349,945 + +0.6
349,946 - -0.6
349,951 - -1.0
349,988 - +0.5
350,022 - +0.4
350,069 - -0.0
350,131 + BACOVA_04017 0.11 -0.1
350,176 + BACOVA_04017 0.14 +0.8
350,180 + BACOVA_04017 0.14 -0.3
350,181 - BACOVA_04017 0.15 -1.1
350,184 + BACOVA_04017 0.15 +0.7
350,186 - BACOVA_04017 0.15 -0.9
350,186 - BACOVA_04017 0.15 +0.2
350,195 - BACOVA_04017 0.16 +0.4
350,231 - BACOVA_04017 0.18 +1.1
350,292 - BACOVA_04017 0.23 -0.0
350,330 + BACOVA_04017 0.26 +0.5
350,345 - BACOVA_04017 0.27 -1.1
350,401 + BACOVA_04017 0.32 -0.4
350,471 + BACOVA_04017 0.37 +0.8
350,471 + BACOVA_04017 0.37 -0.6
350,472 - BACOVA_04017 0.37 -0.1
350,495 + BACOVA_04017 0.39 +0.3
350,496 - BACOVA_04017 0.39 -0.8
350,506 - BACOVA_04017 0.40 +0.7
350,524 - BACOVA_04017 0.42 -0.6
350,537 + BACOVA_04017 0.43 -0.8
350,604 + BACOVA_04017 0.48 -0.2
350,604 + BACOVA_04017 0.48 -0.3
350,605 - BACOVA_04017 0.48 -0.0
350,606 + BACOVA_04017 0.48 +0.6
350,649 + BACOVA_04017 0.51 -1.4
350,789 + BACOVA_04017 0.62 +0.4
350,802 - BACOVA_04017 0.63 -0.3
350,824 - BACOVA_04017 0.65 +0.3

Or see this region's nucleotide sequence