Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03090 and BACOVA_03091 are separated by 171 nucleotides BACOVA_03091 and BACOVA_03092 are separated by 139 nucleotides BACOVA_03092 and BACOVA_03093 are separated by 77 nucleotides
BACOVA_03090: BACOVA_03090 - RND transporter, HAE1 family, at 166,118 to 169,150
_03090
BACOVA_03091: BACOVA_03091 - efflux transporter, RND family, MFP subunit, at 169,322 to 170,410
_03091
BACOVA_03092: BACOVA_03092 - hypothetical protein, at 170,550 to 171,221
_03092
BACOVA_03093: BACOVA_03093 - ribosome small subunit-dependent GTPase A, at 171,299 to 172,231
_03093
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2 at 168.340 kb on - strand, within BACOVA_03090 at 168.346 kb on + strand, within BACOVA_03090 at 168.398 kb on - strand, within BACOVA_03090 at 168.446 kb on - strand, within BACOVA_03090 at 168.459 kb on - strand, within BACOVA_03090 at 168.463 kb on + strand, within BACOVA_03090 at 168.526 kb on + strand, within BACOVA_03090 at 168.530 kb on + strand, within BACOVA_03090 at 168.530 kb on + strand, within BACOVA_03090 at 168.531 kb on - strand, within BACOVA_03090 at 168.626 kb on - strand, within BACOVA_03090 at 168.626 kb on - strand, within BACOVA_03090 at 168.629 kb on + strand, within BACOVA_03090 at 168.630 kb on - strand, within BACOVA_03090 at 168.630 kb on - strand, within BACOVA_03090 at 168.634 kb on + strand, within BACOVA_03090 at 168.634 kb on + strand, within BACOVA_03090 at 168.635 kb on - strand, within BACOVA_03090 at 168.635 kb on - strand, within BACOVA_03090 at 168.635 kb on - strand, within BACOVA_03090 at 168.635 kb on - strand, within BACOVA_03090 at 168.635 kb on - strand, within BACOVA_03090 at 168.638 kb on + strand, within BACOVA_03090 at 168.740 kb on - strand, within BACOVA_03090 at 168.740 kb on - strand, within BACOVA_03090 at 168.878 kb on - strand at 168.880 kb on + strand at 168.880 kb on + strand at 168.881 kb on - strand at 168.962 kb on + strand at 169.028 kb on - strand at 169.031 kb on + strand at 169.032 kb on - strand at 169.091 kb on - strand at 169.094 kb on - strand at 169.112 kb on + strand at 169.115 kb on + strand at 169.128 kb on - strand at 169.133 kb on + strand at 169.156 kb on + strand at 169.177 kb on + strand at 169.249 kb on + strand at 169.262 kb on + strand at 169.262 kb on + strand at 169.276 kb on + strand at 169.277 kb on - strand at 169.285 kb on + strand at 169.287 kb on + strand at 169.288 kb on - strand at 169.294 kb on + strand at 169.294 kb on + strand at 169.308 kb on + strand at 169.315 kb on + strand at 169.400 kb on + strand at 169.401 kb on - strand at 169.451 kb on - strand, within BACOVA_03091 at 169.483 kb on + strand, within BACOVA_03091 at 169.498 kb on + strand, within BACOVA_03091 at 169.541 kb on + strand, within BACOVA_03091 at 169.550 kb on - strand, within BACOVA_03091 at 169.553 kb on + strand, within BACOVA_03091 at 169.554 kb on - strand, within BACOVA_03091 at 169.575 kb on - strand, within BACOVA_03091 at 169.584 kb on + strand, within BACOVA_03091 at 169.599 kb on - strand, within BACOVA_03091 at 169.622 kb on + strand, within BACOVA_03091 at 169.622 kb on + strand, within BACOVA_03091 at 169.623 kb on - strand, within BACOVA_03091 at 169.623 kb on - strand, within BACOVA_03091 at 169.671 kb on - strand, within BACOVA_03091 at 169.671 kb on - strand, within BACOVA_03091 at 169.679 kb on + strand, within BACOVA_03091 at 169.833 kb on + strand, within BACOVA_03091 at 169.834 kb on - strand, within BACOVA_03091 at 169.838 kb on - strand, within BACOVA_03091 at 169.886 kb on + strand, within BACOVA_03091 at 169.887 kb on - strand, within BACOVA_03091 at 169.906 kb on + strand, within BACOVA_03091 at 169.907 kb on - strand, within BACOVA_03091 at 169.916 kb on - strand, within BACOVA_03091 at 169.943 kb on + strand, within BACOVA_03091 at 169.965 kb on + strand, within BACOVA_03091 at 169.997 kb on + strand, within BACOVA_03091 at 170.093 kb on + strand, within BACOVA_03091 at 170.141 kb on + strand, within BACOVA_03091 at 170.142 kb on - strand, within BACOVA_03091 at 170.237 kb on + strand, within BACOVA_03091 at 170.395 kb on + strand at 170.404 kb on + strand at 170.405 kb on - strand at 170.416 kb on - strand at 170.418 kb on + strand at 170.418 kb on + strand at 170.423 kb on + strand at 170.424 kb on - strand at 170.424 kb on - strand at 170.424 kb on - strand at 170.424 kb on - strand at 170.426 kb on - strand at 170.434 kb on + strand at 170.434 kb on + strand at 170.434 kb on + strand at 170.434 kb on + strand at 170.435 kb on - strand at 170.435 kb on - strand at 170.436 kb on + strand at 170.437 kb on - strand at 170.525 kb on + strand at 170.528 kb on + strand at 170.529 kb on - strand at 170.537 kb on - strand at 170.537 kb on - strand at 170.542 kb on + strand at 170.551 kb on + strand at 170.551 kb on + strand at 170.566 kb on + strand at 170.567 kb on - strand at 170.568 kb on + strand at 170.568 kb on + strand at 170.569 kb on - strand at 170.569 kb on - strand at 170.569 kb on - strand at 170.583 kb on + strand at 170.606 kb on + strand at 170.641 kb on + strand, within BACOVA_03092 at 170.649 kb on + strand, within BACOVA_03092 at 170.702 kb on - strand, within BACOVA_03092 at 170.735 kb on + strand, within BACOVA_03092 at 170.736 kb on - strand, within BACOVA_03092 at 170.739 kb on + strand, within BACOVA_03092 at 170.739 kb on + strand, within BACOVA_03092 at 170.770 kb on - strand, within BACOVA_03092 at 170.813 kb on + strand, within BACOVA_03092 at 170.823 kb on + strand, within BACOVA_03092 at 170.824 kb on - strand, within BACOVA_03092 at 170.824 kb on - strand, within BACOVA_03092 at 170.824 kb on - strand, within BACOVA_03092 at 170.864 kb on + strand, within BACOVA_03092 at 170.865 kb on - strand, within BACOVA_03092 at 170.881 kb on + strand, within BACOVA_03092 at 170.881 kb on + strand, within BACOVA_03092 at 170.881 kb on + strand, within BACOVA_03092 at 170.882 kb on - strand, within BACOVA_03092 at 170.884 kb on - strand, within BACOVA_03092 at 170.892 kb on - strand, within BACOVA_03092 at 170.892 kb on - strand, within BACOVA_03092 at 170.912 kb on - strand, within BACOVA_03092 at 170.949 kb on - strand, within BACOVA_03092 at 170.961 kb on - strand, within BACOVA_03092 at 170.961 kb on - strand, within BACOVA_03092 at 170.969 kb on + strand, within BACOVA_03092 at 170.970 kb on - strand, within BACOVA_03092 at 170.972 kb on - strand, within BACOVA_03092 at 170.972 kb on - strand, within BACOVA_03092 at 170.976 kb on + strand, within BACOVA_03092 at 170.977 kb on - strand, within BACOVA_03092 at 170.988 kb on - strand, within BACOVA_03092 at 171.000 kb on - strand, within BACOVA_03092 at 171.003 kb on + strand, within BACOVA_03092 at 171.013 kb on + strand, within BACOVA_03092 at 171.013 kb on + strand, within BACOVA_03092 at 171.013 kb on + strand, within BACOVA_03092 at 171.039 kb on + strand, within BACOVA_03092 at 171.083 kb on + strand, within BACOVA_03092 at 171.084 kb on - strand, within BACOVA_03092 at 171.084 kb on - strand, within BACOVA_03092 at 171.123 kb on + strand, within BACOVA_03092 at 171.124 kb on - strand, within BACOVA_03092 at 171.124 kb on - strand, within BACOVA_03092 at 171.127 kb on + strand, within BACOVA_03092 at 171.127 kb on + strand, within BACOVA_03092 at 171.128 kb on - strand, within BACOVA_03092 at 171.160 kb on + strand at 171.199 kb on - strand at 171.202 kb on - strand at 171.222 kb on - strand at 171.238 kb on + strand at 171.241 kb on + strand at 171.246 kb on + strand at 171.246 kb on + strand at 171.247 kb on - strand at 171.247 kb on - strand at 171.247 kb on - strand at 171.247 kb on - strand at 171.247 kb on - strand at 171.251 kb on - strand at 171.252 kb on + strand at 171.252 kb on + strand at 171.253 kb on - strand at 171.274 kb on + strand at 171.275 kb on - strand at 171.332 kb on - strand at 171.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 168,340 - BACOVA_03090 0.73 -0.1 168,346 + BACOVA_03090 0.73 +0.5 168,398 - BACOVA_03090 0.75 +0.4 168,446 - BACOVA_03090 0.77 -0.5 168,459 - BACOVA_03090 0.77 +0.0 168,463 + BACOVA_03090 0.77 +0.4 168,526 + BACOVA_03090 0.79 +0.6 168,530 + BACOVA_03090 0.80 +0.4 168,530 + BACOVA_03090 0.80 +0.7 168,531 - BACOVA_03090 0.80 +0.2 168,626 - BACOVA_03090 0.83 +0.2 168,626 - BACOVA_03090 0.83 +0.6 168,629 + BACOVA_03090 0.83 -0.3 168,630 - BACOVA_03090 0.83 -2.4 168,630 - BACOVA_03090 0.83 -0.5 168,634 + BACOVA_03090 0.83 +0.9 168,634 + BACOVA_03090 0.83 +0.8 168,635 - BACOVA_03090 0.83 -0.0 168,635 - BACOVA_03090 0.83 -0.1 168,635 - BACOVA_03090 0.83 -0.1 168,635 - BACOVA_03090 0.83 -0.2 168,635 - BACOVA_03090 0.83 -1.0 168,638 + BACOVA_03090 0.83 -0.3 168,740 - BACOVA_03090 0.86 -0.8 168,740 - BACOVA_03090 0.86 -0.7 168,878 - +0.3 168,880 + -0.8 168,880 + -0.5 168,881 - -0.4 168,962 + +0.1 169,028 - +0.7 169,031 + -0.5 169,032 - -0.0 169,091 - -0.4 169,094 - +0.5 169,112 + +0.2 169,115 + +0.4 169,128 - +0.0 169,133 + -0.0 169,156 + +0.3 169,177 + -0.2 169,249 + +0.1 169,262 + +0.5 169,262 + -1.0 169,276 + +0.5 169,277 - +0.8 169,285 + -0.4 169,287 + +0.3 169,288 - +0.3 169,294 + +0.1 169,294 + +0.1 169,308 + +0.1 169,315 + -0.1 169,400 + -0.1 169,401 - -1.1 169,451 - BACOVA_03091 0.12 +1.2 169,483 + BACOVA_03091 0.15 +0.3 169,498 + BACOVA_03091 0.16 +0.8 169,541 + BACOVA_03091 0.20 -0.8 169,550 - BACOVA_03091 0.21 -0.2 169,553 + BACOVA_03091 0.21 +0.5 169,554 - BACOVA_03091 0.21 -0.2 169,575 - BACOVA_03091 0.23 -0.6 169,584 + BACOVA_03091 0.24 -0.1 169,599 - BACOVA_03091 0.25 +0.5 169,622 + BACOVA_03091 0.28 +0.8 169,622 + BACOVA_03091 0.28 -0.0 169,623 - BACOVA_03091 0.28 -0.1 169,623 - BACOVA_03091 0.28 +0.9 169,671 - BACOVA_03091 0.32 +1.1 169,671 - BACOVA_03091 0.32 -0.1 169,679 + BACOVA_03091 0.33 +0.9 169,833 + BACOVA_03091 0.47 -0.4 169,834 - BACOVA_03091 0.47 +0.1 169,838 - BACOVA_03091 0.47 +0.2 169,886 + BACOVA_03091 0.52 -1.0 169,887 - BACOVA_03091 0.52 -0.8 169,906 + BACOVA_03091 0.54 +1.1 169,907 - BACOVA_03091 0.54 -0.3 169,916 - BACOVA_03091 0.55 +0.8 169,943 + BACOVA_03091 0.57 -0.6 169,965 + BACOVA_03091 0.59 -1.3 169,997 + BACOVA_03091 0.62 +0.1 170,093 + BACOVA_03091 0.71 +0.6 170,141 + BACOVA_03091 0.75 +0.9 170,142 - BACOVA_03091 0.75 +0.4 170,237 + BACOVA_03091 0.84 +2.0 170,395 + +0.1 170,404 + +0.3 170,405 - +0.3 170,416 - +0.0 170,418 + +0.2 170,418 + +1.1 170,423 + -0.8 170,424 - +0.8 170,424 - +0.2 170,424 - -0.7 170,424 - +0.6 170,426 - -0.4 170,434 + +0.3 170,434 + -0.6 170,434 + -0.8 170,434 + +0.0 170,435 - -0.2 170,435 - -0.3 170,436 + -0.6 170,437 - -0.3 170,525 + +0.1 170,528 + -0.3 170,529 - -0.9 170,537 - -1.3 170,537 - +0.8 170,542 + -1.4 170,551 + -0.1 170,551 + +0.3 170,566 + +0.7 170,567 - +0.6 170,568 + +0.3 170,568 + -0.3 170,569 - +0.6 170,569 - -0.0 170,569 - -0.9 170,583 + +0.4 170,606 + -0.6 170,641 + BACOVA_03092 0.14 +0.2 170,649 + BACOVA_03092 0.15 +1.3 170,702 - BACOVA_03092 0.23 +0.6 170,735 + BACOVA_03092 0.28 +0.2 170,736 - BACOVA_03092 0.28 -0.0 170,739 + BACOVA_03092 0.28 -0.2 170,739 + BACOVA_03092 0.28 +0.3 170,770 - BACOVA_03092 0.33 +1.0 170,813 + BACOVA_03092 0.39 +0.1 170,823 + BACOVA_03092 0.41 -1.5 170,824 - BACOVA_03092 0.41 +0.6 170,824 - BACOVA_03092 0.41 -1.2 170,824 - BACOVA_03092 0.41 +0.2 170,864 + BACOVA_03092 0.47 -0.4 170,865 - BACOVA_03092 0.47 -1.0 170,881 + BACOVA_03092 0.49 -0.8 170,881 + BACOVA_03092 0.49 -0.3 170,881 + BACOVA_03092 0.49 +0.5 170,882 - BACOVA_03092 0.49 +0.1 170,884 - BACOVA_03092 0.50 +0.5 170,892 - BACOVA_03092 0.51 -0.4 170,892 - BACOVA_03092 0.51 -0.1 170,912 - BACOVA_03092 0.54 +0.5 170,949 - BACOVA_03092 0.59 +0.2 170,961 - BACOVA_03092 0.61 -1.2 170,961 - BACOVA_03092 0.61 -0.5 170,969 + BACOVA_03092 0.62 +0.2 170,970 - BACOVA_03092 0.62 -1.0 170,972 - BACOVA_03092 0.63 -0.5 170,972 - BACOVA_03092 0.63 -1.4 170,976 + BACOVA_03092 0.63 -0.5 170,977 - BACOVA_03092 0.64 -0.7 170,988 - BACOVA_03092 0.65 -0.3 171,000 - BACOVA_03092 0.67 +0.7 171,003 + BACOVA_03092 0.67 -0.0 171,013 + BACOVA_03092 0.69 +0.2 171,013 + BACOVA_03092 0.69 -0.3 171,013 + BACOVA_03092 0.69 -0.3 171,039 + BACOVA_03092 0.73 -1.0 171,083 + BACOVA_03092 0.79 -0.7 171,084 - BACOVA_03092 0.79 -0.7 171,084 - BACOVA_03092 0.79 -0.7 171,123 + BACOVA_03092 0.85 -0.2 171,124 - BACOVA_03092 0.85 -0.1 171,124 - BACOVA_03092 0.85 -1.3 171,127 + BACOVA_03092 0.86 -0.0 171,127 + BACOVA_03092 0.86 -0.7 171,128 - BACOVA_03092 0.86 -0.2 171,160 + +0.9 171,199 - +0.3 171,202 - +0.2 171,222 - +0.3 171,238 + +1.0 171,241 + -0.7 171,246 + +0.2 171,246 + -1.4 171,247 - -1.2 171,247 - +1.1 171,247 - +1.9 171,247 - +0.4 171,247 - -0.6 171,251 - -0.0 171,252 + -0.6 171,252 + +0.1 171,253 - +0.1 171,274 + -1.0 171,275 - -0.6 171,332 - -0.9 171,332 - -0.8
Or see this region's nucleotide sequence