Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02798

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02797 and BACOVA_02798 are separated by 47 nucleotidesBACOVA_02798 and BACOVA_02799 are separated by 201 nucleotides BACOVA_02797: BACOVA_02797 - glycosyl hydrolase, family 43, at 252,467 to 253,654 _02797 BACOVA_02798: BACOVA_02798 - arylsulfatase, at 253,702 to 255,255 _02798 BACOVA_02799: BACOVA_02799 - hypothetical protein, at 255,457 to 257,511 _02799 Position (kb) 253 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 252.715 kb on + strand, within BACOVA_02797at 252.715 kb on + strand, within BACOVA_02797at 252.756 kb on + strand, within BACOVA_02797at 252.756 kb on + strand, within BACOVA_02797at 252.757 kb on - strand, within BACOVA_02797at 252.760 kb on + strand, within BACOVA_02797at 252.760 kb on + strand, within BACOVA_02797at 252.761 kb on - strand, within BACOVA_02797at 252.790 kb on + strand, within BACOVA_02797at 252.791 kb on - strand, within BACOVA_02797at 252.807 kb on + strand, within BACOVA_02797at 252.807 kb on + strand, within BACOVA_02797at 252.807 kb on + strand, within BACOVA_02797at 252.808 kb on - strand, within BACOVA_02797at 252.845 kb on - strand, within BACOVA_02797at 252.847 kb on - strand, within BACOVA_02797at 252.929 kb on - strand, within BACOVA_02797at 252.929 kb on - strand, within BACOVA_02797at 252.929 kb on - strand, within BACOVA_02797at 252.931 kb on - strand, within BACOVA_02797at 252.968 kb on - strand, within BACOVA_02797at 253.018 kb on + strand, within BACOVA_02797at 253.117 kb on + strand, within BACOVA_02797at 253.141 kb on + strand, within BACOVA_02797at 253.216 kb on - strand, within BACOVA_02797at 253.216 kb on - strand, within BACOVA_02797at 253.231 kb on + strand, within BACOVA_02797at 253.231 kb on + strand, within BACOVA_02797at 253.232 kb on - strand, within BACOVA_02797at 253.232 kb on - strand, within BACOVA_02797at 253.233 kb on + strand, within BACOVA_02797at 253.280 kb on + strand, within BACOVA_02797at 253.310 kb on - strand, within BACOVA_02797at 253.388 kb on - strand, within BACOVA_02797at 253.388 kb on - strand, within BACOVA_02797at 253.407 kb on + strand, within BACOVA_02797at 253.408 kb on - strand, within BACOVA_02797at 253.410 kb on + strand, within BACOVA_02797at 253.411 kb on - strand, within BACOVA_02797at 253.411 kb on - strand, within BACOVA_02797at 253.411 kb on - strand, within BACOVA_02797at 253.491 kb on - strand, within BACOVA_02797at 253.491 kb on - strand, within BACOVA_02797at 253.522 kb on - strand, within BACOVA_02797at 253.524 kb on - strand, within BACOVA_02797at 253.524 kb on - strand, within BACOVA_02797at 253.524 kb on - strand, within BACOVA_02797at 253.552 kb on + strandat 253.599 kb on + strandat 253.611 kb on - strandat 253.616 kb on + strandat 253.623 kb on - strandat 253.669 kb on - strandat 253.677 kb on + strandat 253.677 kb on + strandat 253.681 kb on + strandat 253.685 kb on + strandat 253.686 kb on - strandat 253.686 kb on - strandat 253.696 kb on + strandat 253.722 kb on - strandat 253.836 kb on - strandat 253.858 kb on - strand, within BACOVA_02798at 253.888 kb on - strand, within BACOVA_02798at 253.889 kb on + strand, within BACOVA_02798at 254.081 kb on - strand, within BACOVA_02798at 254.142 kb on + strand, within BACOVA_02798at 254.223 kb on + strand, within BACOVA_02798at 254.267 kb on - strand, within BACOVA_02798at 254.325 kb on - strand, within BACOVA_02798at 254.337 kb on - strand, within BACOVA_02798at 254.450 kb on + strand, within BACOVA_02798at 254.450 kb on + strand, within BACOVA_02798at 254.525 kb on + strand, within BACOVA_02798at 254.603 kb on + strand, within BACOVA_02798at 254.604 kb on - strand, within BACOVA_02798at 254.604 kb on - strand, within BACOVA_02798at 254.841 kb on - strand, within BACOVA_02798at 254.907 kb on + strand, within BACOVA_02798at 254.927 kb on - strand, within BACOVA_02798at 254.964 kb on + strand, within BACOVA_02798at 254.980 kb on + strand, within BACOVA_02798at 255.053 kb on + strand, within BACOVA_02798at 255.054 kb on - strand, within BACOVA_02798at 255.070 kb on + strand, within BACOVA_02798at 255.070 kb on + strand, within BACOVA_02798at 255.070 kb on + strand, within BACOVA_02798at 255.071 kb on - strand, within BACOVA_02798at 255.162 kb on + strandat 255.163 kb on - strandat 255.165 kb on + strandat 255.175 kb on - strandat 255.220 kb on + strandat 255.221 kb on - strandat 255.283 kb on + strandat 255.338 kb on - strandat 255.374 kb on + strandat 255.375 kb on - strandat 255.384 kb on + strandat 255.385 kb on - strandat 255.385 kb on - strandat 255.469 kb on + strandat 255.469 kb on + strandat 255.469 kb on + strandat 255.470 kb on - strandat 255.527 kb on + strandat 255.600 kb on + strandat 255.600 kb on + strandat 255.601 kb on - strandat 255.601 kb on - strandat 255.643 kb on + strandat 255.644 kb on - strandat 255.670 kb on + strand, within BACOVA_02799at 255.685 kb on - strand, within BACOVA_02799at 255.686 kb on + strand, within BACOVA_02799at 255.687 kb on - strand, within BACOVA_02799at 255.703 kb on - strand, within BACOVA_02799at 255.707 kb on + strand, within BACOVA_02799at 255.743 kb on - strand, within BACOVA_02799at 255.807 kb on - strand, within BACOVA_02799at 255.824 kb on - strand, within BACOVA_02799at 255.829 kb on - strand, within BACOVA_02799at 255.835 kb on + strand, within BACOVA_02799at 255.844 kb on - strand, within BACOVA_02799at 255.975 kb on + strand, within BACOVA_02799at 255.976 kb on - strand, within BACOVA_02799at 256.037 kb on + strand, within BACOVA_02799at 256.038 kb on - strand, within BACOVA_02799at 256.085 kb on + strand, within BACOVA_02799at 256.085 kb on + strand, within BACOVA_02799at 256.233 kb on - strand, within BACOVA_02799

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
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252,715 + BACOVA_02797 0.21 -0.4
252,715 + BACOVA_02797 0.21 -2.0
252,756 + BACOVA_02797 0.24 +0.5
252,756 + BACOVA_02797 0.24 -0.5
252,757 - BACOVA_02797 0.24 -0.1
252,760 + BACOVA_02797 0.25 +0.3
252,760 + BACOVA_02797 0.25 -1.5
252,761 - BACOVA_02797 0.25 -1.2
252,790 + BACOVA_02797 0.27 -0.1
252,791 - BACOVA_02797 0.27 -0.3
252,807 + BACOVA_02797 0.29 -0.4
252,807 + BACOVA_02797 0.29 -1.1
252,807 + BACOVA_02797 0.29 -0.2
252,808 - BACOVA_02797 0.29 +1.3
252,845 - BACOVA_02797 0.32 +0.5
252,847 - BACOVA_02797 0.32 -0.9
252,929 - BACOVA_02797 0.39 -0.4
252,929 - BACOVA_02797 0.39 -0.6
252,929 - BACOVA_02797 0.39 +0.3
252,931 - BACOVA_02797 0.39 -0.3
252,968 - BACOVA_02797 0.42 -0.7
253,018 + BACOVA_02797 0.46 -0.1
253,117 + BACOVA_02797 0.55 -0.1
253,141 + BACOVA_02797 0.57 +0.0
253,216 - BACOVA_02797 0.63 -0.4
253,216 - BACOVA_02797 0.63 +0.1
253,231 + BACOVA_02797 0.64 -0.1
253,231 + BACOVA_02797 0.64 -0.4
253,232 - BACOVA_02797 0.64 -0.3
253,232 - BACOVA_02797 0.64 -0.2
253,233 + BACOVA_02797 0.64 -1.7
253,280 + BACOVA_02797 0.68 -0.2
253,310 - BACOVA_02797 0.71 -0.9
253,388 - BACOVA_02797 0.78 -0.0
253,388 - BACOVA_02797 0.78 -1.2
253,407 + BACOVA_02797 0.79 -0.6
253,408 - BACOVA_02797 0.79 -0.1
253,410 + BACOVA_02797 0.79 -0.4
253,411 - BACOVA_02797 0.79 -0.4
253,411 - BACOVA_02797 0.79 -0.1
253,411 - BACOVA_02797 0.79 +0.5
253,491 - BACOVA_02797 0.86 -1.2
253,491 - BACOVA_02797 0.86 -3.1
253,522 - BACOVA_02797 0.89 -0.5
253,524 - BACOVA_02797 0.89 -0.1
253,524 - BACOVA_02797 0.89 -0.3
253,524 - BACOVA_02797 0.89 +0.2
253,552 + -0.4
253,599 + -0.6
253,611 - -1.4
253,616 + -0.2
253,623 - -0.0
253,669 - -0.8
253,677 + +1.2
253,677 + -0.6
253,681 + +0.4
253,685 + -0.2
253,686 - +1.4
253,686 - -1.5
253,696 + +0.2
253,722 - -0.4
253,836 - +0.0
253,858 - BACOVA_02798 0.10 -0.4
253,888 - BACOVA_02798 0.12 -0.3
253,889 + BACOVA_02798 0.12 -1.2
254,081 - BACOVA_02798 0.24 -0.0
254,142 + BACOVA_02798 0.28 +1.4
254,223 + BACOVA_02798 0.34 +0.0
254,267 - BACOVA_02798 0.36 -1.0
254,325 - BACOVA_02798 0.40 -0.5
254,337 - BACOVA_02798 0.41 -0.7
254,450 + BACOVA_02798 0.48 -0.7
254,450 + BACOVA_02798 0.48 -0.2
254,525 + BACOVA_02798 0.53 +0.3
254,603 + BACOVA_02798 0.58 -0.2
254,604 - BACOVA_02798 0.58 +0.7
254,604 - BACOVA_02798 0.58 +1.3
254,841 - BACOVA_02798 0.73 -1.6
254,907 + BACOVA_02798 0.78 -0.7
254,927 - BACOVA_02798 0.79 -0.5
254,964 + BACOVA_02798 0.81 -0.5
254,980 + BACOVA_02798 0.82 -0.5
255,053 + BACOVA_02798 0.87 +0.0
255,054 - BACOVA_02798 0.87 +0.1
255,070 + BACOVA_02798 0.88 +0.2
255,070 + BACOVA_02798 0.88 +0.3
255,070 + BACOVA_02798 0.88 +0.1
255,071 - BACOVA_02798 0.88 -2.3
255,162 + +0.5
255,163 - -1.4
255,165 + +1.2
255,175 - -0.6
255,220 + -1.3
255,221 - +0.5
255,283 + +0.4
255,338 - +1.4
255,374 + -0.4
255,375 - -0.0
255,384 + +0.4
255,385 - +0.1
255,385 - +1.8
255,469 + +0.3
255,469 + +0.4
255,469 + -0.1
255,470 - -1.0
255,527 + +0.2
255,600 + +0.1
255,600 + +0.1
255,601 - +0.1
255,601 - -1.2
255,643 + +1.0
255,644 - +0.4
255,670 + BACOVA_02799 0.10 +0.9
255,685 - BACOVA_02799 0.11 -0.6
255,686 + BACOVA_02799 0.11 -0.2
255,687 - BACOVA_02799 0.11 -0.0
255,703 - BACOVA_02799 0.12 -0.4
255,707 + BACOVA_02799 0.12 +0.3
255,743 - BACOVA_02799 0.14 -2.0
255,807 - BACOVA_02799 0.17 +1.0
255,824 - BACOVA_02799 0.18 -0.3
255,829 - BACOVA_02799 0.18 -0.1
255,835 + BACOVA_02799 0.18 -0.5
255,844 - BACOVA_02799 0.19 +2.3
255,975 + BACOVA_02799 0.25 +0.7
255,976 - BACOVA_02799 0.25 -1.2
256,037 + BACOVA_02799 0.28 -0.3
256,038 - BACOVA_02799 0.28 +1.2
256,085 + BACOVA_02799 0.31 +0.6
256,085 + BACOVA_02799 0.31 -0.8
256,233 - BACOVA_02799 0.38 -0.6

Or see this region's nucleotide sequence