Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02686 and BACOVA_02687 overlap by 4 nucleotides BACOVA_02687 and BACOVA_02688 are separated by 174 nucleotides BACOVA_02688 and BACOVA_02689 are separated by 51 nucleotides BACOVA_02689 and BACOVA_02690 are separated by 192 nucleotides
BACOVA_02686: BACOVA_02686 - hypothetical protein, at 92,158 to 93,423
_02686
BACOVA_02687: BACOVA_02687 - hypothetical protein, at 93,420 to 94,289
_02687
BACOVA_02688: BACOVA_02688 - hypothetical protein, at 94,464 to 94,631
_02688
BACOVA_02689: BACOVA_02689 - DNA-binding helix-turn-helix protein, at 94,683 to 95,078
_02689
BACOVA_02690: BACOVA_02690 - HMGL-like protein, at 95,271 to 97,049
_02690
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 92.430 kb on + strand, within BACOVA_02686 at 92.431 kb on - strand, within BACOVA_02686 at 92.442 kb on + strand, within BACOVA_02686 at 92.442 kb on + strand, within BACOVA_02686 at 92.442 kb on + strand, within BACOVA_02686 at 92.454 kb on + strand, within BACOVA_02686 at 92.557 kb on + strand, within BACOVA_02686 at 92.558 kb on - strand, within BACOVA_02686 at 92.562 kb on + strand, within BACOVA_02686 at 92.562 kb on + strand, within BACOVA_02686 at 92.563 kb on - strand, within BACOVA_02686 at 92.680 kb on + strand, within BACOVA_02686 at 92.680 kb on + strand, within BACOVA_02686 at 92.708 kb on + strand, within BACOVA_02686 at 92.708 kb on + strand, within BACOVA_02686 at 92.708 kb on + strand, within BACOVA_02686 at 92.709 kb on - strand, within BACOVA_02686 at 92.763 kb on + strand, within BACOVA_02686 at 92.764 kb on - strand, within BACOVA_02686 at 92.852 kb on + strand, within BACOVA_02686 at 92.895 kb on + strand, within BACOVA_02686 at 92.904 kb on - strand, within BACOVA_02686 at 92.904 kb on - strand, within BACOVA_02686 at 92.926 kb on - strand, within BACOVA_02686 at 92.927 kb on + strand, within BACOVA_02686 at 92.936 kb on - strand, within BACOVA_02686 at 93.043 kb on + strand, within BACOVA_02686 at 93.043 kb on + strand, within BACOVA_02686 at 93.044 kb on - strand, within BACOVA_02686 at 93.047 kb on - strand, within BACOVA_02686 at 93.047 kb on - strand, within BACOVA_02686 at 93.074 kb on + strand, within BACOVA_02686 at 93.074 kb on + strand, within BACOVA_02686 at 93.074 kb on + strand, within BACOVA_02686 at 93.074 kb on + strand, within BACOVA_02686 at 93.075 kb on - strand, within BACOVA_02686 at 93.075 kb on - strand, within BACOVA_02686 at 93.117 kb on - strand, within BACOVA_02686 at 93.136 kb on - strand, within BACOVA_02686 at 93.138 kb on - strand, within BACOVA_02686 at 93.162 kb on + strand, within BACOVA_02686 at 93.162 kb on + strand, within BACOVA_02686 at 93.162 kb on + strand, within BACOVA_02686 at 93.164 kb on + strand, within BACOVA_02686 at 93.167 kb on + strand, within BACOVA_02686 at 93.168 kb on - strand, within BACOVA_02686 at 93.229 kb on + strand, within BACOVA_02686 at 93.230 kb on - strand, within BACOVA_02686 at 93.261 kb on + strand, within BACOVA_02686 at 93.261 kb on + strand, within BACOVA_02686 at 93.261 kb on + strand, within BACOVA_02686 at 93.266 kb on - strand, within BACOVA_02686 at 93.310 kb on + strand at 93.316 kb on - strand at 93.338 kb on - strand at 93.338 kb on - strand at 93.380 kb on + strand at 93.381 kb on - strand at 93.381 kb on - strand at 93.381 kb on - strand at 93.382 kb on + strand at 93.382 kb on + strand at 93.383 kb on - strand at 93.383 kb on - strand at 93.389 kb on - strand at 93.423 kb on + strand at 93.464 kb on + strand at 93.498 kb on + strand at 93.525 kb on - strand, within BACOVA_02687 at 93.528 kb on + strand, within BACOVA_02687 at 93.529 kb on - strand, within BACOVA_02687 at 93.613 kb on - strand, within BACOVA_02687 at 93.642 kb on + strand, within BACOVA_02687 at 93.642 kb on + strand, within BACOVA_02687 at 93.654 kb on - strand, within BACOVA_02687 at 93.670 kb on + strand, within BACOVA_02687 at 93.670 kb on + strand, within BACOVA_02687 at 93.671 kb on - strand, within BACOVA_02687 at 93.671 kb on - strand, within BACOVA_02687 at 93.672 kb on + strand, within BACOVA_02687 at 93.672 kb on + strand, within BACOVA_02687 at 93.672 kb on + strand, within BACOVA_02687 at 93.673 kb on - strand, within BACOVA_02687 at 93.698 kb on + strand, within BACOVA_02687 at 93.698 kb on + strand, within BACOVA_02687 at 93.712 kb on - strand, within BACOVA_02687 at 93.736 kb on + strand, within BACOVA_02687 at 93.736 kb on + strand, within BACOVA_02687 at 93.762 kb on + strand, within BACOVA_02687 at 93.762 kb on + strand, within BACOVA_02687 at 93.765 kb on + strand, within BACOVA_02687 at 93.769 kb on - strand, within BACOVA_02687 at 93.769 kb on - strand, within BACOVA_02687 at 93.806 kb on + strand, within BACOVA_02687 at 93.816 kb on - strand, within BACOVA_02687 at 93.863 kb on + strand, within BACOVA_02687 at 93.879 kb on + strand, within BACOVA_02687 at 93.896 kb on - strand, within BACOVA_02687 at 93.913 kb on + strand, within BACOVA_02687 at 93.913 kb on + strand, within BACOVA_02687 at 93.916 kb on + strand, within BACOVA_02687 at 93.916 kb on + strand, within BACOVA_02687 at 93.916 kb on + strand, within BACOVA_02687 at 93.917 kb on - strand, within BACOVA_02687 at 93.956 kb on + strand, within BACOVA_02687 at 93.956 kb on + strand, within BACOVA_02687 at 93.962 kb on + strand, within BACOVA_02687 at 93.963 kb on - strand, within BACOVA_02687 at 93.966 kb on - strand, within BACOVA_02687 at 93.983 kb on - strand, within BACOVA_02687 at 94.034 kb on + strand, within BACOVA_02687 at 94.082 kb on + strand, within BACOVA_02687 at 94.097 kb on + strand, within BACOVA_02687 at 94.104 kb on + strand, within BACOVA_02687 at 94.131 kb on + strand, within BACOVA_02687 at 94.134 kb on + strand, within BACOVA_02687 at 94.142 kb on + strand, within BACOVA_02687 at 94.164 kb on - strand, within BACOVA_02687 at 94.172 kb on + strand, within BACOVA_02687 at 94.192 kb on + strand, within BACOVA_02687 at 94.199 kb on + strand, within BACOVA_02687 at 94.201 kb on + strand, within BACOVA_02687 at 94.202 kb on - strand, within BACOVA_02687 at 94.202 kb on - strand, within BACOVA_02687 at 94.202 kb on - strand, within BACOVA_02687 at 94.214 kb on + strand at 94.263 kb on - strand at 94.273 kb on - strand at 94.316 kb on + strand at 94.317 kb on - strand at 94.360 kb on + strand at 94.388 kb on - strand at 94.438 kb on - strand at 94.444 kb on + strand at 94.449 kb on + strand at 94.449 kb on + strand at 94.450 kb on - strand at 94.450 kb on - strand at 94.459 kb on - strand at 94.463 kb on - strand at 94.466 kb on - strand at 94.487 kb on - strand, within BACOVA_02688 at 94.490 kb on + strand, within BACOVA_02688 at 94.491 kb on - strand, within BACOVA_02688 at 94.528 kb on - strand, within BACOVA_02688 at 94.607 kb on - strand, within BACOVA_02688 at 94.613 kb on + strand, within BACOVA_02688 at 94.624 kb on - strand at 94.655 kb on - strand at 94.681 kb on - strand at 94.681 kb on - strand at 94.705 kb on + strand at 94.706 kb on - strand at 94.709 kb on - strand at 94.709 kb on - strand at 94.780 kb on + strand, within BACOVA_02689 at 94.781 kb on - strand, within BACOVA_02689 at 94.781 kb on - strand, within BACOVA_02689 at 94.800 kb on - strand, within BACOVA_02689 at 94.800 kb on - strand, within BACOVA_02689 at 94.850 kb on - strand, within BACOVA_02689 at 94.859 kb on - strand, within BACOVA_02689 at 94.862 kb on - strand, within BACOVA_02689 at 94.882 kb on + strand, within BACOVA_02689 at 94.887 kb on - strand, within BACOVA_02689 at 94.908 kb on + strand, within BACOVA_02689 at 94.908 kb on + strand, within BACOVA_02689 at 94.937 kb on + strand, within BACOVA_02689 at 94.938 kb on - strand, within BACOVA_02689 at 94.952 kb on + strand, within BACOVA_02689 at 94.962 kb on - strand, within BACOVA_02689 at 94.962 kb on - strand, within BACOVA_02689 at 94.965 kb on - strand, within BACOVA_02689 at 95.035 kb on + strand, within BACOVA_02689 at 95.036 kb on - strand, within BACOVA_02689 at 95.036 kb on - strand, within BACOVA_02689 at 95.040 kb on - strand at 95.040 kb on - strand at 95.045 kb on + strand at 95.046 kb on - strand at 95.047 kb on + strand at 95.074 kb on + strand at 95.074 kb on + strand at 95.075 kb on - strand at 95.075 kb on - strand at 95.085 kb on + strand at 95.086 kb on - strand at 95.151 kb on + strand at 95.181 kb on + strand at 95.181 kb on + strand at 95.181 kb on + strand at 95.182 kb on - strand at 95.184 kb on - strand at 95.246 kb on + strand at 95.247 kb on - strand at 95.247 kb on - strand at 95.247 kb on - strand at 95.247 kb on - strand at 95.249 kb on - strand at 95.249 kb on - strand at 95.261 kb on - strand at 95.261 kb on - strand at 95.262 kb on + strand at 95.262 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C) remove 92,430 + BACOVA_02686 0.21 +1.4 92,431 - BACOVA_02686 0.22 +0.4 92,442 + BACOVA_02686 0.22 +0.0 92,442 + BACOVA_02686 0.22 -2.4 92,442 + BACOVA_02686 0.22 -0.0 92,454 + BACOVA_02686 0.23 -0.0 92,557 + BACOVA_02686 0.32 -0.8 92,558 - BACOVA_02686 0.32 -0.8 92,562 + BACOVA_02686 0.32 +0.8 92,562 + BACOVA_02686 0.32 -1.5 92,563 - BACOVA_02686 0.32 +0.2 92,680 + BACOVA_02686 0.41 -0.4 92,680 + BACOVA_02686 0.41 +0.5 92,708 + BACOVA_02686 0.43 -0.2 92,708 + BACOVA_02686 0.43 +0.4 92,708 + BACOVA_02686 0.43 -1.0 92,709 - BACOVA_02686 0.44 -0.8 92,763 + BACOVA_02686 0.48 +0.2 92,764 - BACOVA_02686 0.48 +0.2 92,852 + BACOVA_02686 0.55 -1.0 92,895 + BACOVA_02686 0.58 -0.9 92,904 - BACOVA_02686 0.59 -0.8 92,904 - BACOVA_02686 0.59 -0.7 92,926 - BACOVA_02686 0.61 -0.5 92,927 + BACOVA_02686 0.61 -1.2 92,936 - BACOVA_02686 0.61 +1.2 93,043 + BACOVA_02686 0.70 -0.4 93,043 + BACOVA_02686 0.70 +0.5 93,044 - BACOVA_02686 0.70 -0.2 93,047 - BACOVA_02686 0.70 -1.2 93,047 - BACOVA_02686 0.70 -0.2 93,074 + BACOVA_02686 0.72 -0.3 93,074 + BACOVA_02686 0.72 -0.8 93,074 + BACOVA_02686 0.72 -0.4 93,074 + BACOVA_02686 0.72 -1.2 93,075 - BACOVA_02686 0.72 -0.5 93,075 - BACOVA_02686 0.72 -0.2 93,117 - BACOVA_02686 0.76 +0.0 93,136 - BACOVA_02686 0.77 -1.6 93,138 - BACOVA_02686 0.77 -0.2 93,162 + BACOVA_02686 0.79 +0.3 93,162 + BACOVA_02686 0.79 -0.4 93,162 + BACOVA_02686 0.79 -0.7 93,164 + BACOVA_02686 0.79 +0.1 93,167 + BACOVA_02686 0.80 -0.8 93,168 - BACOVA_02686 0.80 -0.0 93,229 + BACOVA_02686 0.85 +0.4 93,230 - BACOVA_02686 0.85 +0.1 93,261 + BACOVA_02686 0.87 +0.4 93,261 + BACOVA_02686 0.87 -0.3 93,261 + BACOVA_02686 0.87 -0.1 93,266 - BACOVA_02686 0.88 -2.0 93,310 + -0.2 93,316 - +0.0 93,338 - +0.3 93,338 - -0.2 93,380 + -0.9 93,381 - +0.2 93,381 - -0.9 93,381 - +0.2 93,382 + +1.2 93,382 + -1.0 93,383 - +0.1 93,383 - -0.0 93,389 - -0.8 93,423 + +0.9 93,464 + -0.0 93,498 + -0.5 93,525 - BACOVA_02687 0.12 -1.3 93,528 + BACOVA_02687 0.12 +0.7 93,529 - BACOVA_02687 0.13 -0.7 93,613 - BACOVA_02687 0.22 -1.4 93,642 + BACOVA_02687 0.26 +1.0 93,642 + BACOVA_02687 0.26 -0.2 93,654 - BACOVA_02687 0.27 +0.4 93,670 + BACOVA_02687 0.29 -0.1 93,670 + BACOVA_02687 0.29 +1.6 93,671 - BACOVA_02687 0.29 -0.2 93,671 - BACOVA_02687 0.29 -1.2 93,672 + BACOVA_02687 0.29 +0.6 93,672 + BACOVA_02687 0.29 +1.1 93,672 + BACOVA_02687 0.29 +0.4 93,673 - BACOVA_02687 0.29 -0.6 93,698 + BACOVA_02687 0.32 -0.1 93,698 + BACOVA_02687 0.32 -0.0 93,712 - BACOVA_02687 0.34 -2.2 93,736 + BACOVA_02687 0.36 +0.4 93,736 + BACOVA_02687 0.36 +0.0 93,762 + BACOVA_02687 0.39 +0.9 93,762 + BACOVA_02687 0.39 +0.8 93,765 + BACOVA_02687 0.40 +0.2 93,769 - BACOVA_02687 0.40 -0.4 93,769 - BACOVA_02687 0.40 +0.8 93,806 + BACOVA_02687 0.44 +0.1 93,816 - BACOVA_02687 0.46 -0.3 93,863 + BACOVA_02687 0.51 +0.3 93,879 + BACOVA_02687 0.53 +0.1 93,896 - BACOVA_02687 0.55 -0.4 93,913 + BACOVA_02687 0.57 +0.7 93,913 + BACOVA_02687 0.57 -0.1 93,916 + BACOVA_02687 0.57 -0.7 93,916 + BACOVA_02687 0.57 -0.6 93,916 + BACOVA_02687 0.57 -1.1 93,917 - BACOVA_02687 0.57 +0.4 93,956 + BACOVA_02687 0.62 +0.1 93,956 + BACOVA_02687 0.62 +0.6 93,962 + BACOVA_02687 0.62 -0.7 93,963 - BACOVA_02687 0.62 -0.2 93,966 - BACOVA_02687 0.63 +0.7 93,983 - BACOVA_02687 0.65 +2.4 94,034 + BACOVA_02687 0.71 -0.5 94,082 + BACOVA_02687 0.76 +0.8 94,097 + BACOVA_02687 0.78 -0.4 94,104 + BACOVA_02687 0.79 +0.2 94,131 + BACOVA_02687 0.82 +1.0 94,134 + BACOVA_02687 0.82 +0.2 94,142 + BACOVA_02687 0.83 +0.5 94,164 - BACOVA_02687 0.86 -0.6 94,172 + BACOVA_02687 0.86 -0.0 94,192 + BACOVA_02687 0.89 -1.1 94,199 + BACOVA_02687 0.90 -0.8 94,201 + BACOVA_02687 0.90 -0.5 94,202 - BACOVA_02687 0.90 +0.8 94,202 - BACOVA_02687 0.90 -1.2 94,202 - BACOVA_02687 0.90 -0.5 94,214 + +0.1 94,263 - -0.8 94,273 - +0.9 94,316 + +0.4 94,317 - -1.2 94,360 + +0.3 94,388 - -0.1 94,438 - -0.7 94,444 + +0.1 94,449 + -0.3 94,449 + +0.6 94,450 - +0.4 94,450 - -1.0 94,459 - +0.7 94,463 - -1.4 94,466 - -1.0 94,487 - BACOVA_02688 0.14 +0.2 94,490 + BACOVA_02688 0.15 -1.3 94,491 - BACOVA_02688 0.16 -0.4 94,528 - BACOVA_02688 0.38 +0.5 94,607 - BACOVA_02688 0.85 -0.7 94,613 + BACOVA_02688 0.89 +0.4 94,624 - +0.3 94,655 - +0.8 94,681 - -0.0 94,681 - -0.1 94,705 + +0.1 94,706 - -0.4 94,709 - +0.0 94,709 - +0.5 94,780 + BACOVA_02689 0.24 +0.8 94,781 - BACOVA_02689 0.25 -1.2 94,781 - BACOVA_02689 0.25 -1.0 94,800 - BACOVA_02689 0.30 -0.9 94,800 - BACOVA_02689 0.30 +0.5 94,850 - BACOVA_02689 0.42 +0.2 94,859 - BACOVA_02689 0.44 +0.0 94,862 - BACOVA_02689 0.45 -0.7 94,882 + BACOVA_02689 0.50 -0.6 94,887 - BACOVA_02689 0.52 -2.1 94,908 + BACOVA_02689 0.57 -0.6 94,908 + BACOVA_02689 0.57 +0.4 94,937 + BACOVA_02689 0.64 -1.1 94,938 - BACOVA_02689 0.64 -0.5 94,952 + BACOVA_02689 0.68 +0.3 94,962 - BACOVA_02689 0.70 -0.3 94,962 - BACOVA_02689 0.70 -0.3 94,965 - BACOVA_02689 0.71 -0.6 95,035 + BACOVA_02689 0.89 -0.2 95,036 - BACOVA_02689 0.89 -0.2 95,036 - BACOVA_02689 0.89 +0.2 95,040 - +0.9 95,040 - +0.8 95,045 + +0.1 95,046 - +0.2 95,047 + +0.2 95,074 + +0.3 95,074 + +0.2 95,075 - +0.8 95,075 - -0.3 95,085 + +0.6 95,086 - -1.4 95,151 + -0.2 95,181 + -3.3 95,181 + +1.1 95,181 + -0.1 95,182 - +0.4 95,184 - +0.2 95,246 + -0.3 95,247 - +0.3 95,247 - -0.1 95,247 - -0.2 95,247 - +0.2 95,249 - -0.4 95,249 - +0.2 95,261 - -0.9 95,261 - -0.5 95,262 + +1.5 95,262 + -0.1
Or see this region's nucleotide sequence