Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01552

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01549 and BACOVA_01550 are separated by 4 nucleotidesBACOVA_01550 and BACOVA_01551 are separated by 88 nucleotidesBACOVA_01551 and BACOVA_01552 are separated by 17 nucleotidesBACOVA_01552 and BACOVA_01553 are separated by 187 nucleotides BACOVA_01549: BACOVA_01549 - hypothetical protein, at 49,472 to 50,788 _01549 BACOVA_01550: BACOVA_01550 - hypothetical protein, at 50,793 to 51,362 _01550 BACOVA_01551: BACOVA_01551 - hypothetical protein, at 51,451 to 51,612 _01551 BACOVA_01552: BACOVA_01552 - transcriptional regulator, AraC family, at 51,630 to 52,544 _01552 BACOVA_01553: BACOVA_01553 - site-specific recombinase, phage integrase family, at 52,732 to 54,063 _01553 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.687 kb on + strandat 50.714 kb on - strandat 50.714 kb on - strandat 50.766 kb on + strandat 50.766 kb on + strandat 50.766 kb on + strandat 50.767 kb on - strandat 50.768 kb on + strandat 50.769 kb on - strandat 50.770 kb on + strandat 50.799 kb on + strandat 50.806 kb on + strandat 50.806 kb on + strandat 50.806 kb on + strandat 50.808 kb on + strandat 50.891 kb on - strand, within BACOVA_01550at 50.974 kb on + strand, within BACOVA_01550at 50.974 kb on + strand, within BACOVA_01550at 50.975 kb on - strand, within BACOVA_01550at 51.026 kb on + strand, within BACOVA_01550at 51.027 kb on - strand, within BACOVA_01550at 51.058 kb on + strand, within BACOVA_01550at 51.111 kb on + strand, within BACOVA_01550at 51.118 kb on + strand, within BACOVA_01550at 51.184 kb on + strand, within BACOVA_01550at 51.185 kb on - strand, within BACOVA_01550at 51.248 kb on + strand, within BACOVA_01550at 51.249 kb on - strand, within BACOVA_01550at 51.249 kb on - strand, within BACOVA_01550at 51.249 kb on - strand, within BACOVA_01550at 51.342 kb on + strandat 51.349 kb on - strandat 51.352 kb on + strandat 51.370 kb on + strandat 51.373 kb on + strandat 51.377 kb on + strandat 51.378 kb on - strandat 51.544 kb on - strand, within BACOVA_01551at 51.545 kb on + strand, within BACOVA_01551at 51.546 kb on - strand, within BACOVA_01551at 51.547 kb on + strand, within BACOVA_01551at 51.568 kb on - strand, within BACOVA_01551at 51.663 kb on + strandat 51.664 kb on - strandat 51.693 kb on + strandat 51.724 kb on - strand, within BACOVA_01552at 51.764 kb on + strand, within BACOVA_01552at 51.764 kb on + strand, within BACOVA_01552at 51.765 kb on - strand, within BACOVA_01552at 51.765 kb on - strand, within BACOVA_01552at 51.813 kb on - strand, within BACOVA_01552at 51.860 kb on - strand, within BACOVA_01552at 51.962 kb on - strand, within BACOVA_01552at 51.982 kb on + strand, within BACOVA_01552at 51.982 kb on + strand, within BACOVA_01552at 51.999 kb on + strand, within BACOVA_01552at 51.999 kb on + strand, within BACOVA_01552at 52.000 kb on - strand, within BACOVA_01552at 52.240 kb on + strand, within BACOVA_01552at 52.240 kb on + strand, within BACOVA_01552at 52.240 kb on + strand, within BACOVA_01552at 52.240 kb on + strand, within BACOVA_01552at 52.382 kb on - strand, within BACOVA_01552at 52.382 kb on - strand, within BACOVA_01552at 52.382 kb on - strand, within BACOVA_01552at 52.382 kb on - strand, within BACOVA_01552at 52.385 kb on + strand, within BACOVA_01552at 52.385 kb on + strand, within BACOVA_01552at 52.385 kb on + strand, within BACOVA_01552at 52.385 kb on + strand, within BACOVA_01552at 52.386 kb on - strand, within BACOVA_01552at 52.386 kb on - strand, within BACOVA_01552at 52.387 kb on + strand, within BACOVA_01552at 52.387 kb on + strand, within BACOVA_01552at 52.453 kb on - strandat 52.453 kb on - strandat 52.453 kb on - strandat 52.503 kb on + strandat 52.512 kb on + strandat 52.520 kb on + strandat 52.520 kb on + strandat 52.526 kb on + strandat 52.526 kb on + strandat 52.536 kb on - strandat 52.553 kb on - strandat 52.574 kb on - strandat 52.578 kb on + strandat 52.582 kb on + strandat 52.638 kb on + strandat 52.661 kb on - strandat 52.686 kb on + strandat 52.754 kb on - strandat 52.754 kb on - strandat 52.799 kb on + strandat 52.799 kb on + strandat 52.800 kb on - strandat 52.842 kb on + strandat 52.843 kb on - strandat 52.905 kb on - strand, within BACOVA_01553at 52.966 kb on - strand, within BACOVA_01553at 53.051 kb on + strand, within BACOVA_01553at 53.052 kb on - strand, within BACOVA_01553at 53.052 kb on - strand, within BACOVA_01553at 53.113 kb on - strand, within BACOVA_01553at 53.124 kb on - strand, within BACOVA_01553at 53.124 kb on - strand, within BACOVA_01553at 53.195 kb on + strand, within BACOVA_01553at 53.196 kb on - strand, within BACOVA_01553at 53.210 kb on + strand, within BACOVA_01553at 53.211 kb on - strand, within BACOVA_01553at 53.211 kb on - strand, within BACOVA_01553at 53.211 kb on - strand, within BACOVA_01553at 53.211 kb on - strand, within BACOVA_01553at 53.274 kb on + strand, within BACOVA_01553at 53.379 kb on + strand, within BACOVA_01553at 53.381 kb on + strand, within BACOVA_01553at 53.405 kb on + strand, within BACOVA_01553at 53.405 kb on + strand, within BACOVA_01553at 53.408 kb on + strand, within BACOVA_01553at 53.413 kb on + strand, within BACOVA_01553at 53.414 kb on - strand, within BACOVA_01553at 53.419 kb on - strand, within BACOVA_01553at 53.436 kb on + strand, within BACOVA_01553at 53.439 kb on + strand, within BACOVA_01553at 53.441 kb on + strand, within BACOVA_01553at 53.442 kb on - strand, within BACOVA_01553

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/mL (C)
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50,687 + +0.6
50,714 - +0.2
50,714 - -0.8
50,766 + -0.0
50,766 + +0.8
50,766 + +0.6
50,767 - +1.0
50,768 + +0.5
50,769 - +0.4
50,770 + -0.3
50,799 + +1.0
50,806 + +0.5
50,806 + +0.6
50,806 + -0.7
50,808 + +0.5
50,891 - BACOVA_01550 0.17 -2.0
50,974 + BACOVA_01550 0.32 -0.1
50,974 + BACOVA_01550 0.32 -1.1
50,975 - BACOVA_01550 0.32 +1.0
51,026 + BACOVA_01550 0.41 -0.8
51,027 - BACOVA_01550 0.41 +0.1
51,058 + BACOVA_01550 0.46 +0.4
51,111 + BACOVA_01550 0.56 +0.4
51,118 + BACOVA_01550 0.57 -0.1
51,184 + BACOVA_01550 0.69 +0.9
51,185 - BACOVA_01550 0.69 +0.9
51,248 + BACOVA_01550 0.80 +1.1
51,249 - BACOVA_01550 0.80 +0.9
51,249 - BACOVA_01550 0.80 -0.5
51,249 - BACOVA_01550 0.80 +1.5
51,342 + +0.4
51,349 - +0.4
51,352 + +0.4
51,370 + +0.1
51,373 + -0.1
51,377 + +0.8
51,378 - +1.9
51,544 - BACOVA_01551 0.57 +1.1
51,545 + BACOVA_01551 0.58 +0.4
51,546 - BACOVA_01551 0.59 +1.4
51,547 + BACOVA_01551 0.59 -0.3
51,568 - BACOVA_01551 0.72 +2.6
51,663 + -0.8
51,664 - -1.1
51,693 + +0.7
51,724 - BACOVA_01552 0.10 +0.5
51,764 + BACOVA_01552 0.15 -0.3
51,764 + BACOVA_01552 0.15 +1.0
51,765 - BACOVA_01552 0.15 +0.8
51,765 - BACOVA_01552 0.15 +0.8
51,813 - BACOVA_01552 0.20 +1.2
51,860 - BACOVA_01552 0.25 -0.8
51,962 - BACOVA_01552 0.36 +0.7
51,982 + BACOVA_01552 0.38 -0.7
51,982 + BACOVA_01552 0.38 +0.4
51,999 + BACOVA_01552 0.40 +0.0
51,999 + BACOVA_01552 0.40 -0.3
52,000 - BACOVA_01552 0.40 +0.1
52,240 + BACOVA_01552 0.67 +0.5
52,240 + BACOVA_01552 0.67 -0.5
52,240 + BACOVA_01552 0.67 -0.1
52,240 + BACOVA_01552 0.67 -0.7
52,382 - BACOVA_01552 0.82 +0.5
52,382 - BACOVA_01552 0.82 +2.1
52,382 - BACOVA_01552 0.82 -0.9
52,382 - BACOVA_01552 0.82 -0.2
52,385 + BACOVA_01552 0.83 +0.9
52,385 + BACOVA_01552 0.83 -0.9
52,385 + BACOVA_01552 0.83 +0.8
52,385 + BACOVA_01552 0.83 -0.9
52,386 - BACOVA_01552 0.83 +1.8
52,386 - BACOVA_01552 0.83 +0.7
52,387 + BACOVA_01552 0.83 +1.2
52,387 + BACOVA_01552 0.83 +0.1
52,453 - +0.5
52,453 - +0.2
52,453 - +0.4
52,503 + +1.2
52,512 + +0.0
52,520 + +0.4
52,520 + -0.0
52,526 + -0.4
52,526 + -0.1
52,536 - +0.1
52,553 - -0.1
52,574 - +0.2
52,578 + +0.3
52,582 + -0.3
52,638 + +0.7
52,661 - +1.0
52,686 + +0.4
52,754 - +0.4
52,754 - +0.8
52,799 + +0.1
52,799 + +0.3
52,800 - +0.3
52,842 + -0.3
52,843 - +0.1
52,905 - BACOVA_01553 0.13 +1.4
52,966 - BACOVA_01553 0.18 +2.1
53,051 + BACOVA_01553 0.24 -3.0
53,052 - BACOVA_01553 0.24 -0.1
53,052 - BACOVA_01553 0.24 -0.3
53,113 - BACOVA_01553 0.29 -0.5
53,124 - BACOVA_01553 0.29 -0.7
53,124 - BACOVA_01553 0.29 -0.2
53,195 + BACOVA_01553 0.35 -0.5
53,196 - BACOVA_01553 0.35 +0.7
53,210 + BACOVA_01553 0.36 +0.0
53,211 - BACOVA_01553 0.36 -0.4
53,211 - BACOVA_01553 0.36 +0.5
53,211 - BACOVA_01553 0.36 -0.3
53,211 - BACOVA_01553 0.36 +0.0
53,274 + BACOVA_01553 0.41 +0.2
53,379 + BACOVA_01553 0.49 -0.2
53,381 + BACOVA_01553 0.49 +0.6
53,405 + BACOVA_01553 0.51 +0.5
53,405 + BACOVA_01553 0.51 -0.3
53,408 + BACOVA_01553 0.51 +1.1
53,413 + BACOVA_01553 0.51 -0.4
53,414 - BACOVA_01553 0.51 -0.3
53,419 - BACOVA_01553 0.52 +0.2
53,436 + BACOVA_01553 0.53 +0.2
53,439 + BACOVA_01553 0.53 +0.4
53,441 + BACOVA_01553 0.53 +0.6
53,442 - BACOVA_01553 0.53 -0.3

Or see this region's nucleotide sequence