Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01345

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01343 and MPMX26_01344 are separated by 14 nucleotidesMPMX26_01344 and MPMX26_01345 are separated by 98 nucleotidesMPMX26_01345 and MPMX26_01346 are separated by 86 nucleotidesMPMX26_01346 and MPMX26_01347 are separated by 249 nucleotidesMPMX26_01347 and MPMX26_01348 are separated by 73 nucleotides MPMX26_01343: MPMX26_01343 - hypothetical protein, at 1,416,936 to 1,417,379 _01343 MPMX26_01344: MPMX26_01344 - hypothetical protein, at 1,417,394 to 1,417,945 _01344 MPMX26_01345: MPMX26_01345 - hypothetical protein, at 1,418,044 to 1,418,238 _01345 MPMX26_01346: MPMX26_01346 - tRNA-Met, at 1,418,325 to 1,418,401 _01346 MPMX26_01347: MPMX26_01347 - Cold shock protein CspV, at 1,418,651 to 1,418,860 _01347 MPMX26_01348: MPMX26_01348 - hypothetical protein, at 1,418,934 to 1,419,614 _01348 Position (kb) 1418 1419Strain fitness (log2 ratio) -2 -1 0 1at 1417.661 kb on + strand, within MPMX26_01344at 1417.696 kb on + strand, within MPMX26_01344at 1418.091 kb on + strand, within MPMX26_01345at 1418.097 kb on + strand, within MPMX26_01345at 1418.118 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.171 kb on + strand, within MPMX26_01345at 1418.214 kb on + strand, within MPMX26_01345at 1418.378 kb on + strand, within MPMX26_01346at 1418.417 kb on + strandat 1418.557 kb on + strandat 1418.604 kb on + strandat 1418.653 kb on + strandat 1418.682 kb on + strand, within MPMX26_01347at 1418.727 kb on + strand, within MPMX26_01347at 1418.746 kb on + strand, within MPMX26_01347at 1418.770 kb on + strand, within MPMX26_01347at 1418.798 kb on + strand, within MPMX26_01347at 1418.798 kb on + strand, within MPMX26_01347at 1418.798 kb on + strand, within MPMX26_01347at 1418.857 kb on + strandat 1418.871 kb on + strandat 1419.000 kb on - strandat 1419.005 kb on - strand, within MPMX26_01348at 1419.005 kb on - strand, within MPMX26_01348at 1419.015 kb on - strand, within MPMX26_01348at 1419.173 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.183 kb on - strand, within MPMX26_01348at 1419.188 kb on - strand, within MPMX26_01348

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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1,417,661 + MPMX26_01344 0.48 -1.1
1,417,696 + MPMX26_01344 0.55 -2.6
1,418,091 + MPMX26_01345 0.24 +0.1
1,418,097 + MPMX26_01345 0.27 +0.5
1,418,118 + MPMX26_01345 0.38 +0.2
1,418,166 + MPMX26_01345 0.63 +0.4
1,418,166 + MPMX26_01345 0.63 -0.3
1,418,166 + MPMX26_01345 0.63 +0.4
1,418,166 + MPMX26_01345 0.63 +0.5
1,418,166 + MPMX26_01345 0.63 -0.1
1,418,171 + MPMX26_01345 0.65 +1.0
1,418,214 + MPMX26_01345 0.87 +0.3
1,418,378 + MPMX26_01346 0.69 +0.4
1,418,417 + +0.3
1,418,557 + +0.5
1,418,604 + -0.3
1,418,653 + +0.2
1,418,682 + MPMX26_01347 0.15 +0.3
1,418,727 + MPMX26_01347 0.36 -0.1
1,418,746 + MPMX26_01347 0.45 +0.1
1,418,770 + MPMX26_01347 0.57 -0.1
1,418,798 + MPMX26_01347 0.70 -0.2
1,418,798 + MPMX26_01347 0.70 -0.1
1,418,798 + MPMX26_01347 0.70 +0.7
1,418,857 + -0.0
1,418,871 + -0.9
1,419,000 - -0.7
1,419,005 - MPMX26_01348 0.10 -0.2
1,419,005 - MPMX26_01348 0.10 +0.7
1,419,015 - MPMX26_01348 0.12 +0.2
1,419,173 - MPMX26_01348 0.35 +0.0
1,419,183 - MPMX26_01348 0.37 +0.3
1,419,183 - MPMX26_01348 0.37 -1.3
1,419,183 - MPMX26_01348 0.37 -1.0
1,419,183 - MPMX26_01348 0.37 +0.7
1,419,183 - MPMX26_01348 0.37 +0.1
1,419,183 - MPMX26_01348 0.37 +0.5
1,419,183 - MPMX26_01348 0.37 +0.3
1,419,183 - MPMX26_01348 0.37 +1.3
1,419,183 - MPMX26_01348 0.37 +0.4
1,419,183 - MPMX26_01348 0.37 -0.3
1,419,183 - MPMX26_01348 0.37 -0.2
1,419,183 - MPMX26_01348 0.37 -0.2
1,419,183 - MPMX26_01348 0.37 +0.6
1,419,188 - MPMX26_01348 0.37 +0.5

Or see this region's nucleotide sequence