Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01317

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01315 and MPMX26_01316 are separated by 13 nucleotidesMPMX26_01316 and MPMX26_01317 are separated by 15 nucleotidesMPMX26_01317 and MPMX26_01318 are separated by 175 nucleotidesMPMX26_01318 and MPMX26_01319 are separated by 54 nucleotides MPMX26_01315: MPMX26_01315 - hypothetical protein, at 1,390,025 to 1,390,690 _01315 MPMX26_01316: MPMX26_01316 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase, at 1,390,704 to 1,391,213 _01316 MPMX26_01317: MPMX26_01317 - hypothetical protein, at 1,391,229 to 1,392,002 _01317 MPMX26_01318: MPMX26_01318 - hypothetical protein, at 1,392,178 to 1,392,537 _01318 MPMX26_01319: MPMX26_01319 - Transcription-repair-coupling factor, at 1,392,592 to 1,396,095 _01319 Position (kb) 1391 1392 1393Strain fitness (log2 ratio) -1 0 1at 1390.626 kb on - strandat 1390.811 kb on + strand, within MPMX26_01316at 1390.941 kb on + strand, within MPMX26_01316at 1390.944 kb on + strand, within MPMX26_01316at 1391.037 kb on + strand, within MPMX26_01316at 1391.264 kb on + strandat 1391.280 kb on + strandat 1391.282 kb on + strandat 1391.292 kb on + strandat 1391.292 kb on + strandat 1391.306 kb on + strandat 1391.348 kb on + strand, within MPMX26_01317at 1391.348 kb on + strand, within MPMX26_01317at 1391.414 kb on + strand, within MPMX26_01317at 1391.522 kb on + strand, within MPMX26_01317at 1391.558 kb on + strand, within MPMX26_01317at 1391.582 kb on + strand, within MPMX26_01317at 1391.625 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.672 kb on + strand, within MPMX26_01317at 1391.672 kb on + strand, within MPMX26_01317at 1391.750 kb on + strand, within MPMX26_01317at 1391.834 kb on + strand, within MPMX26_01317at 1391.949 kb on + strandat 1392.201 kb on + strandat 1392.214 kb on + strand, within MPMX26_01318at 1392.214 kb on + strand, within MPMX26_01318at 1392.237 kb on + strand, within MPMX26_01318at 1392.312 kb on + strand, within MPMX26_01318at 1392.793 kb on + strandat 1392.804 kb on + strandat 1392.822 kb on + strandat 1392.822 kb on + strandat 1392.942 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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1,390,626 - -0.2
1,390,811 + MPMX26_01316 0.21 +1.4
1,390,941 + MPMX26_01316 0.46 -0.1
1,390,944 + MPMX26_01316 0.47 +0.9
1,391,037 + MPMX26_01316 0.65 -0.4
1,391,264 + +0.0
1,391,280 + +0.2
1,391,282 + -0.1
1,391,292 + -0.2
1,391,292 + -0.2
1,391,306 + +0.3
1,391,348 + MPMX26_01317 0.15 -0.2
1,391,348 + MPMX26_01317 0.15 -0.6
1,391,414 + MPMX26_01317 0.24 -0.2
1,391,522 + MPMX26_01317 0.38 +0.3
1,391,558 + MPMX26_01317 0.43 +0.8
1,391,582 + MPMX26_01317 0.46 +0.1
1,391,625 + MPMX26_01317 0.51 +0.6
1,391,648 + MPMX26_01317 0.54 +1.1
1,391,648 + MPMX26_01317 0.54 -0.2
1,391,648 + MPMX26_01317 0.54 +0.5
1,391,648 + MPMX26_01317 0.54 +0.4
1,391,648 + MPMX26_01317 0.54 +0.1
1,391,648 + MPMX26_01317 0.54 -0.2
1,391,648 + MPMX26_01317 0.54 -0.8
1,391,648 + MPMX26_01317 0.54 +0.9
1,391,669 + MPMX26_01317 0.57 +0.4
1,391,669 + MPMX26_01317 0.57 +0.7
1,391,669 + MPMX26_01317 0.57 -1.0
1,391,669 + MPMX26_01317 0.57 +0.0
1,391,669 + MPMX26_01317 0.57 +1.1
1,391,672 + MPMX26_01317 0.57 +0.4
1,391,672 + MPMX26_01317 0.57 +0.2
1,391,750 + MPMX26_01317 0.67 -0.6
1,391,834 + MPMX26_01317 0.78 -0.2
1,391,949 + +0.5
1,392,201 + +0.1
1,392,214 + MPMX26_01318 0.10 +0.0
1,392,214 + MPMX26_01318 0.10 -0.3
1,392,237 + MPMX26_01318 0.16 +0.4
1,392,312 + MPMX26_01318 0.37 -0.4
1,392,793 + -0.1
1,392,804 + -0.4
1,392,822 + -0.4
1,392,822 + +0.3
1,392,942 + -0.0

Or see this region's nucleotide sequence