Strain Fitness in Escherichia fergusonii Becca around EFB2_04742

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,988,116	+		EFB2_04740	0.88	+0.5
4,988,117	-		EFB2_04740	0.88	-0.2
4,988,117	-		EFB2_04740	0.88	-0.1
4,988,117	-		EFB2_04740	0.88	+0.4
4,988,152	+				+0.4
4,988,152	+				-2.0
4,988,152	+				+0.9
4,988,153	-				+0.6
4,988,153	-				-0.4
4,988,153	-				-0.0
4,988,153	-				+1.3
4,988,153	-				-0.1
4,988,182	+				-0.1
4,988,182	+				-0.5
4,988,183	-				-1.0
4,988,223	-				+1.1
4,988,231	-				+1.0
4,988,238	+				+0.9
4,988,238	+				+0.1
4,988,238	+				-1.9
4,988,238	+				+1.3
4,988,238	+				+0.3
4,988,259	+				-0.2
4,988,259	+				-0.4
4,988,259	+				+1.1
4,988,259	+				+0.2
4,988,259	+				-0.9
4,988,259	+				+0.1
4,988,260	-				+0.7
4,988,260	-				+2.5
4,988,260	-				-1.6
4,988,260	-				-2.1
4,988,260	-				-2.1
4,988,269	+				+0.5
4,988,269	+				+0.4
4,988,269	+				+1.0
4,988,269	+				-0.6
4,988,269	+				-2.4
4,988,269	+				-2.4
4,988,269	+				+2.4
4,988,270	-				-0.1
4,988,270	-				+1.9
4,988,270	-				+0.6
4,988,270	-				+0.0
4,988,270	-				+1.5
4,988,270	-				+1.9
4,988,270	-				-1.1
4,988,270	-				+0.2
4,988,270	-				-0.3
4,988,270	-				+0.2
4,988,287	+				-0.9
4,988,287	+				-0.9
4,988,288	-				-1.2
4,988,288	-				-0.6
4,988,288	-				-0.6
4,988,288	-				+0.0
4,988,288	-				-0.4
4,988,316	+				-0.9
4,988,316	+				+0.3
4,988,316	+				+0.5
4,988,316	+				+1.9
4,988,317	-				-1.1
4,988,317	-				-2.6
4,988,333	+				+0.7
4,988,333	+				-0.7
4,988,333	+				-0.3
4,988,333	+				+0.6
4,988,333	+				-0.1
4,988,334	-				+0.0
4,988,334	-				-0.9
4,988,334	-				-0.7
4,988,334	-				+0.7
4,988,334	-				-1.1
4,988,334	-				+0.7
4,988,334	-				-0.9
4,988,335	+				-4.5
4,988,335	+				-0.0
4,988,335	+				-1.8
4,988,335	+				+0.2
4,988,335	+				-1.9
4,988,335	+				-0.1
4,988,335	+				-0.6
4,988,335	+				-1.7
4,988,335	+				+0.6
4,988,335	+				+2.1
4,988,335	+				-0.7
4,988,335	+				+0.3
4,988,335	+				-0.4
4,988,335	+				+1.5
4,988,335	+				+0.8
4,988,336	-				-2.0
4,988,336	-				+1.9
4,988,336	-				+1.1
4,988,336	-				+1.9
4,988,336	-				-1.8
4,988,336	-				-1.2
4,988,336	-				-0.3
4,988,336	-				+0.7
4,988,336	-				+1.4
4,988,336	-				+0.3
4,988,336	-				+1.5
4,988,336	-				-0.4
4,988,336	-				+0.9
4,988,336	-				-1.5
4,988,336	-				+1.9
4,988,342	-				+0.1
4,988,470	+		EFB2_04741	0.26	+0.4
4,988,540	+		EFB2_04741	0.35	-1.9
4,988,541	-		EFB2_04741	0.35	+0.6
4,988,541	-		EFB2_04741	0.35	-0.1
4,988,541	-		EFB2_04741	0.35	-1.4
4,988,566	+		EFB2_04741	0.38	-0.3
4,988,566	+		EFB2_04741	0.38	+0.7
4,988,566	+		EFB2_04741	0.38	+0.7
4,988,567	-		EFB2_04741	0.38	-1.2
4,988,567	-		EFB2_04741	0.38	-0.7
4,988,578	+		EFB2_04741	0.40	-0.0
4,988,578	+		EFB2_04741	0.40	+0.9
4,988,578	+		EFB2_04741	0.40	-0.4
4,988,579	-		EFB2_04741	0.40	-0.4
4,988,579	-		EFB2_04741	0.40	+1.5
4,988,586	+		EFB2_04741	0.41	+1.5
4,988,586	+		EFB2_04741	0.41	-0.9
4,988,586	+		EFB2_04741	0.41	-0.7
4,988,586	+		EFB2_04741	0.41	+0.2
4,988,586	+		EFB2_04741	0.41	-2.4
4,988,586	+		EFB2_04741	0.41	+0.5
4,988,586	+		EFB2_04741	0.41	-1.8
4,988,586	+		EFB2_04741	0.41	+0.9
4,988,587	-		EFB2_04741	0.41	+0.5
4,988,587	-		EFB2_04741	0.41	-0.3
4,988,587	-		EFB2_04741	0.41	+0.4
4,988,587	-		EFB2_04741	0.41	-1.2
4,988,607	+		EFB2_04741	0.43	-1.6
4,988,608	-		EFB2_04741	0.44	-1.4
4,988,608	-		EFB2_04741	0.44	-2.2
4,988,608	-		EFB2_04741	0.44	+0.8
4,988,625	+		EFB2_04741	0.46	+1.3
4,988,625	+		EFB2_04741	0.46	+0.1
4,988,625	+		EFB2_04741	0.46	-1.0
4,988,625	+		EFB2_04741	0.46	+1.3
4,988,626	-		EFB2_04741	0.46	-2.9
4,988,633	-		EFB2_04741	0.47	+0.2
4,988,638	+		EFB2_04741	0.47	+0.4
4,988,638	+		EFB2_04741	0.47	+0.8
4,988,638	+		EFB2_04741	0.47	+0.1
4,988,639	-		EFB2_04741	0.48	-0.5
4,988,641	+		EFB2_04741	0.48	+0.1
4,988,641	+		EFB2_04741	0.48	-2.6
4,988,641	+		EFB2_04741	0.48	-0.9
4,988,641	+		EFB2_04741	0.48	+0.7
4,988,641	+		EFB2_04741	0.48	-0.0
4,988,641	+		EFB2_04741	0.48	-2.8
4,988,642	-		EFB2_04741	0.48	+1.9
4,988,642	-		EFB2_04741	0.48	-0.6
4,988,642	-		EFB2_04741	0.48	+0.7
4,988,667	-		EFB2_04741	0.51	-1.2
4,988,668	+		EFB2_04741	0.51	+0.4
4,988,710	-		EFB2_04741	0.57	+0.9
4,988,755	+		EFB2_04741	0.62	-2.2
4,988,777	+		EFB2_04741	0.65	+1.1
4,988,778	-		EFB2_04741	0.65	+4.4
4,988,778	-		EFB2_04741	0.65	-1.2
4,988,778	-		EFB2_04741	0.65	-0.4
4,988,781	+		EFB2_04741	0.66	+0.9
4,988,781	+		EFB2_04741	0.66	+0.0
4,988,781	+		EFB2_04741	0.66	+2.3
4,988,781	+		EFB2_04741	0.66	+0.1
4,988,782	-		EFB2_04741	0.66	-1.4
4,988,782	-		EFB2_04741	0.66	-1.2
4,988,782	-		EFB2_04741	0.66	+1.5
4,988,791	+		EFB2_04741	0.67	-2.6
4,988,792	-		EFB2_04741	0.67	-1.0
4,988,793	+		EFB2_04741	0.67	-2.7
4,988,793	+		EFB2_04741	0.67	+1.4
4,988,793	+		EFB2_04741	0.67	-3.7
4,988,793	+		EFB2_04741	0.67	+1.5
4,988,793	+		EFB2_04741	0.67	+1.1
4,988,793	+		EFB2_04741	0.67	-0.0
4,988,793	+		EFB2_04741	0.67	-0.3
4,988,793	+		EFB2_04741	0.67	-3.2
4,988,793	+		EFB2_04741	0.67	+0.3
4,988,793	+		EFB2_04741	0.67	-1.3
4,988,793	+		EFB2_04741	0.67	+0.7
4,988,793	+		EFB2_04741	0.67	-2.1
4,988,793	+		EFB2_04741	0.67	-0.9
4,988,793	+		EFB2_04741	0.67	-0.9
4,988,793	+		EFB2_04741	0.67	-0.9
4,988,793	+		EFB2_04741	0.67	+0.1
4,988,793	+		EFB2_04741	0.67	-0.3
4,988,793	+		EFB2_04741	0.67	-0.4
4,988,793	+		EFB2_04741	0.67	-0.5
4,988,793	+		EFB2_04741	0.67	-1.1
4,988,793	+		EFB2_04741	0.67	-0.2
4,988,793	+		EFB2_04741	0.67	+0.1
4,988,793	+		EFB2_04741	0.67	-0.3
4,988,793	+		EFB2_04741	0.67	+0.7
4,988,793	+		EFB2_04741	0.67	+0.2
4,988,793	+		EFB2_04741	0.67	-0.5
4,988,793	+		EFB2_04741	0.67	-2.4
4,988,793	+		EFB2_04741	0.67	-0.6
4,988,793	+		EFB2_04741	0.67	+1.5
4,988,793	+		EFB2_04741	0.67	-2.0
4,988,794	-		EFB2_04741	0.67	-0.5
4,988,794	-		EFB2_04741	0.67	+0.9
4,988,794	-		EFB2_04741	0.67	-0.6
4,988,794	-		EFB2_04741	0.67	-2.4
4,988,794	-		EFB2_04741	0.67	+0.9
4,988,794	-		EFB2_04741	0.67	+0.0
4,988,794	-		EFB2_04741	0.67	-1.7
4,988,794	-		EFB2_04741	0.67	+1.8
4,988,794	-		EFB2_04741	0.67	-0.7
4,988,794	-		EFB2_04741	0.67	+1.1
4,988,794	-		EFB2_04741	0.67	+1.4
4,988,794	-		EFB2_04741	0.67	-1.4
4,988,794	-		EFB2_04741	0.67	-2.8
4,988,794	-		EFB2_04741	0.67	+0.7
4,988,794	-		EFB2_04741	0.67	+1.4
4,988,794	-		EFB2_04741	0.67	-1.2
4,988,794	-		EFB2_04741	0.67	-0.6
4,988,794	-		EFB2_04741	0.67	+1.0
4,988,794	-		EFB2_04741	0.67	-0.2
4,988,794	-		EFB2_04741	0.67	-3.1
4,988,794	-		EFB2_04741	0.67	-1.4
4,988,794	-		EFB2_04741	0.67	+0.5
4,988,794	-		EFB2_04741	0.67	-0.6
4,988,794	-		EFB2_04741	0.67	-1.6
4,988,847	+		EFB2_04741	0.74	+1.0
4,988,847	+		EFB2_04741	0.74	-0.2
4,988,866	+		EFB2_04741	0.76	+0.9
4,988,867	-		EFB2_04741	0.76	-0.6
4,988,867	-		EFB2_04741	0.76	-1.2
4,988,881	+		EFB2_04741	0.78	-1.8
4,988,881	+		EFB2_04741	0.78	+1.0
4,988,881	+		EFB2_04741	0.78	-0.2
4,988,881	+		EFB2_04741	0.78	+0.8
4,988,881	+		EFB2_04741	0.78	-0.8
4,988,881	+		EFB2_04741	0.78	+0.3
4,988,882	-		EFB2_04741	0.78	+0.4
4,988,882	-		EFB2_04741	0.78	+1.2
4,988,882	-		EFB2_04741	0.78	-1.1
4,988,882	-		EFB2_04741	0.78	+0.1
4,988,889	+		EFB2_04741	0.79	+3.8
4,988,889	+		EFB2_04741	0.79	-0.5
4,988,889	+		EFB2_04741	0.79	-2.8
4,988,890	-		EFB2_04741	0.79	+0.3
4,988,890	-		EFB2_04741	0.79	-0.5
4,988,890	-		EFB2_04741	0.79	-0.9
4,988,890	-		EFB2_04741	0.79	+1.1
4,988,890	-		EFB2_04741	0.79	-1.2
4,988,902	+		EFB2_04741	0.81	-1.8
4,988,902	+		EFB2_04741	0.81	-1.8
4,988,902	+		EFB2_04741	0.81	+0.2
4,988,902	+		EFB2_04741	0.81	-0.3
4,988,902	+		EFB2_04741	0.81	-2.1
4,988,903	-		EFB2_04741	0.81	-0.8
4,988,903	-		EFB2_04741	0.81	+0.7
4,988,903	-		EFB2_04741	0.81	-0.8
4,988,903	-		EFB2_04741	0.81	+0.5
4,988,903	-		EFB2_04741	0.81	+0.0
4,988,912	-		EFB2_04741	0.82	+0.9
4,989,003	+				+0.7
4,989,003	+				-3.0
4,989,003	+				+1.3
4,989,003	+				-1.1
4,989,004	-				-1.2
4,989,004	-				-0.2
4,989,004	-				-0.7
4,989,004	-				+0.7
4,989,004	-				+0.5
4,989,004	-				-3.5
4,989,004	-				+0.4
4,989,045	+				+0.8
4,989,045	+				-1.3
4,989,046	-				-2.5
4,989,071	+				-0.2
4,989,071	+				-1.5
4,989,092	+				-0.9
4,989,092	+				-1.1
4,989,092	+				-2.4
4,989,092	+				+0.4
4,989,093	-				-2.1
4,989,093	-				+0.3
4,989,109	+				-0.5
4,989,109	+				-0.1
4,989,109	+				-0.1
4,989,109	+				+1.7
4,989,110	-				+0.3
4,989,110	-				-0.8
4,989,110	-				+0.2
4,989,110	-				+0.5
4,989,110	-				-0.1
4,989,110	-				-1.8
4,989,110	-				+1.2
4,989,113	+				-1.1
4,989,113	+				+0.5
4,989,113	+				+0.0
4,989,113	+				-0.2
4,989,113	+				+0.2
4,989,113	+				+1.1
4,989,113	+				+1.0
4,989,114	-				+1.4
4,989,114	-				+0.6
4,989,114	-				+0.2
4,989,114	-				+1.1
4,989,114	-				-1.8
4,989,114	-				+0.9
4,989,114	-				+0.3
4,989,114	-				+0.4
4,989,114	-				+1.3
4,989,130	+				+2.1
4,989,130	+				-0.6
4,989,130	+				+0.6
4,989,130	+				+0.4
4,989,130	+				+0.0
4,989,130	+				-0.1
4,989,130	+				+0.1
4,989,131	-				+0.9
4,989,141	+				+0.6
4,989,141	+				+0.2
4,989,141	+				+0.1
4,989,141	+				+0.9
4,989,141	+				+0.9
4,989,141	+				-0.5
4,989,141	+				-0.5
4,989,142	-				+0.0
4,989,142	-				+0.9
4,989,150	+				-2.2
4,989,151	-				+0.6
4,989,153	+				-0.1
4,989,153	+				+0.1
4,989,153	+				-1.7
4,989,153	+				-0.4
4,989,153	+				+1.3
4,989,153	+				-0.5
4,989,154	-				-0.1
4,989,154	-				+0.7
4,989,154	-				-0.7
4,989,154	-				+0.1
4,989,154	-				+0.2
4,989,154	-				+0.1
4,989,154	-				-1.4
4,989,154	-				-0.5
4,989,170	-				-2.1
4,989,207	+				+1.8
4,989,234	+				-0.9
4,989,234	+				-0.2
4,989,235	-				-0.4
4,989,247	+		EFB2_04742	0.11	+1.9
4,989,248	-		EFB2_04742	0.11	-0.5
4,989,260	+		EFB2_04742	0.12	-0.2
4,989,260	+		EFB2_04742	0.12	+0.9
4,989,260	+		EFB2_04742	0.12	-2.1
4,989,261	-		EFB2_04742	0.12	+1.4
4,989,261	-		EFB2_04742	0.12	-0.4
4,989,266	+		EFB2_04742	0.12	+0.6
4,989,266	+		EFB2_04742	0.12	+0.0
4,989,266	+		EFB2_04742	0.12	+0.1
4,989,266	+		EFB2_04742	0.12	+0.9
4,989,266	+		EFB2_04742	0.12	-0.9
4,989,266	+		EFB2_04742	0.12	-0.6
4,989,266	+		EFB2_04742	0.12	-0.7
4,989,266	+		EFB2_04742	0.12	+0.0
4,989,266	+		EFB2_04742	0.12	-2.1
4,989,266	+		EFB2_04742	0.12	-0.3
4,989,266	+		EFB2_04742	0.12	+0.9
4,989,267	-		EFB2_04742	0.12	-0.6
4,989,267	-		EFB2_04742	0.12	-0.1
4,989,267	-		EFB2_04742	0.12	-0.4
4,989,267	-		EFB2_04742	0.12	-0.2
4,989,303	+		EFB2_04742	0.15	-1.0
4,989,304	-		EFB2_04742	0.15	-0.4
4,989,309	+		EFB2_04742	0.16	-0.4
4,989,310	-		EFB2_04742	0.16	-0.5
4,989,310	-		EFB2_04742	0.16	-1.9
4,989,363	+		EFB2_04742	0.20	+1.1
4,989,364	-		EFB2_04742	0.20	+0.1
4,989,388	+		EFB2_04742	0.22	+0.3
4,989,388	+		EFB2_04742	0.22	-1.2
4,989,388	+		EFB2_04742	0.22	-2.8
4,989,388	+		EFB2_04742	0.22	-0.6
4,989,388	+		EFB2_04742	0.22	-0.3
4,989,388	+		EFB2_04742	0.22	-2.2
4,989,389	-		EFB2_04742	0.22	+0.0
4,989,389	-		EFB2_04742	0.22	-1.5
4,989,389	-		EFB2_04742	0.22	-0.5
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4,990,737	-		EFB2_04743	0.27	-4.2
4,990,737	-		EFB2_04743	0.27	-2.1
4,990,737	-		EFB2_04743	0.27	+0.2
4,990,747	-		EFB2_04743	0.28	+1.3
4,990,750	-		EFB2_04743	0.29	-1.9
4,990,766	+		EFB2_04743	0.30	-1.2
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4,991,074	-		EFB2_04743	0.62	-2.1
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4,991,304	+		EFB2_04743	0.85	-2.5
4,991,332	-		EFB2_04743	0.88	-0.4
4,991,367	+				+2.1