Strain Fitness in Escherichia fergusonii Becca around EFB2_04380

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,603,774	+		EFB2_04379	0.47	-0.7
4,603,774	+		EFB2_04379	0.47	-0.7
4,603,774	+		EFB2_04379	0.47	+0.2
4,603,774	+		EFB2_04379	0.47	+0.5
4,603,774	+		EFB2_04379	0.47	-2.8
4,603,774	+		EFB2_04379	0.47	-0.5
4,603,774	+		EFB2_04379	0.47	+0.5
4,603,774	+		EFB2_04379	0.47	-4.1
4,603,774	+		EFB2_04379	0.47	+0.1
4,603,775	-		EFB2_04379	0.47	-0.7
4,603,775	-		EFB2_04379	0.47	+0.2
4,603,775	-		EFB2_04379	0.47	+0.1
4,603,775	-		EFB2_04379	0.47	-1.3
4,603,775	-		EFB2_04379	0.47	+0.5
4,603,775	-		EFB2_04379	0.47	-0.9
4,603,775	-		EFB2_04379	0.47	+0.6
4,603,775	-		EFB2_04379	0.47	-2.4
4,603,775	-		EFB2_04379	0.47	-0.8
4,603,775	-		EFB2_04379	0.47	-1.7
4,603,775	-		EFB2_04379	0.47	-1.7
4,603,775	-		EFB2_04379	0.47	+2.1
4,603,776	+		EFB2_04379	0.47	+0.7
4,603,776	+		EFB2_04379	0.47	+2.1
4,603,776	+		EFB2_04379	0.47	-2.2
4,603,776	+		EFB2_04379	0.47	-2.6
4,603,776	+		EFB2_04379	0.47	-1.7
4,603,776	+		EFB2_04379	0.47	-2.5
4,603,776	+		EFB2_04379	0.47	+1.7
4,603,776	+		EFB2_04379	0.47	-1.8
4,603,776	+		EFB2_04379	0.47	+0.5
4,603,776	+		EFB2_04379	0.47	-1.6
4,603,776	+		EFB2_04379	0.47	-0.8
4,603,777	-		EFB2_04379	0.47	-0.2
4,603,777	-		EFB2_04379	0.47	-0.2
4,603,777	-		EFB2_04379	0.47	-0.8
4,603,777	-		EFB2_04379	0.47	-0.4
4,603,777	-		EFB2_04379	0.47	+0.9
4,603,777	-		EFB2_04379	0.47	-3.6
4,603,777	-		EFB2_04379	0.47	-1.7
4,603,777	-		EFB2_04379	0.47	-2.2
4,603,777	-		EFB2_04379	0.47	-0.8
4,603,870	+		EFB2_04379	0.52	+0.3
4,603,870	+		EFB2_04379	0.52	-0.8
4,603,870	+		EFB2_04379	0.52	-2.9
4,603,870	+		EFB2_04379	0.52	-1.4
4,603,870	+		EFB2_04379	0.52	-1.6
4,603,871	-		EFB2_04379	0.52	-0.8
4,603,945	+		EFB2_04379	0.56	+2.4
4,603,945	+		EFB2_04379	0.56	+0.1
4,603,945	+		EFB2_04379	0.56	+0.3
4,603,945	+		EFB2_04379	0.56	+0.8
4,603,945	+		EFB2_04379	0.56	+1.0
4,603,945	+		EFB2_04379	0.56	-0.2
4,603,945	+		EFB2_04379	0.56	+1.2
4,603,945	+		EFB2_04379	0.56	+0.3
4,603,945	+		EFB2_04379	0.56	-0.3
4,603,945	+		EFB2_04379	0.56	-2.3
4,603,945	-		EFB2_04379	0.56	-0.1
4,603,946	-		EFB2_04379	0.56	+0.5
4,603,946	-		EFB2_04379	0.56	-4.5
4,603,946	-		EFB2_04379	0.56	-0.8
4,603,946	-		EFB2_04379	0.56	-2.5
4,603,946	-		EFB2_04379	0.56	+0.5
4,603,946	-		EFB2_04379	0.56	+0.9
4,603,946	-		EFB2_04379	0.56	+0.1
4,603,946	-		EFB2_04379	0.56	-0.5
4,603,946	-		EFB2_04379	0.56	-1.7
4,603,946	-		EFB2_04379	0.56	-1.0
4,603,946	-		EFB2_04379	0.56	-0.6
4,603,982	+		EFB2_04379	0.58	-0.5
4,603,999	+		EFB2_04379	0.59	-0.5
4,603,999	+		EFB2_04379	0.59	-0.9
4,603,999	+		EFB2_04379	0.59	-0.5
4,603,999	+		EFB2_04379	0.59	-1.4
4,603,999	+		EFB2_04379	0.59	+1.0
4,603,999	+		EFB2_04379	0.59	-2.2
4,603,999	+		EFB2_04379	0.59	-1.8
4,603,999	+		EFB2_04379	0.59	-2.4
4,603,999	+		EFB2_04379	0.59	+0.6
4,603,999	+		EFB2_04379	0.59	-1.2
4,603,999	+		EFB2_04379	0.59	-0.5
4,603,999	+		EFB2_04379	0.59	-2.2
4,603,999	+		EFB2_04379	0.59	+0.1
4,603,999	+		EFB2_04379	0.59	+0.4
4,603,999	+		EFB2_04379	0.59	-1.7
4,603,999	+		EFB2_04379	0.59	-1.2
4,603,999	+		EFB2_04379	0.59	-0.7
4,603,999	+		EFB2_04379	0.59	+1.1
4,603,999	+		EFB2_04379	0.59	-0.3
4,603,999	+		EFB2_04379	0.59	+0.3
4,604,000	-		EFB2_04379	0.59	-1.2
4,604,000	-		EFB2_04379	0.59	+0.6
4,604,000	-		EFB2_04379	0.59	-0.5
4,604,000	-		EFB2_04379	0.59	-1.2
4,604,000	-		EFB2_04379	0.59	-2.7
4,604,000	-		EFB2_04379	0.59	-4.4
4,604,000	-		EFB2_04379	0.59	-3.3
4,604,000	-		EFB2_04379	0.59	-0.3
4,604,000	-		EFB2_04379	0.59	+0.2
4,604,000	-		EFB2_04379	0.59	-0.1
4,604,000	-		EFB2_04379	0.59	+0.3
4,604,000	-		EFB2_04379	0.59	-1.5
4,604,000	-		EFB2_04379	0.59	-0.9
4,604,000	-		EFB2_04379	0.59	+0.5
4,604,000	-		EFB2_04379	0.59	-0.0
4,604,000	-		EFB2_04379	0.59	+1.3
4,604,000	-		EFB2_04379	0.59	-2.4
4,604,000	-		EFB2_04379	0.59	-0.9
4,604,000	-		EFB2_04379	0.59	-0.6
4,604,000	-		EFB2_04379	0.59	-0.9
4,604,000	-		EFB2_04379	0.59	+0.6
4,604,000	-		EFB2_04379	0.59	-0.9
4,604,000	-		EFB2_04379	0.59	-0.7
4,604,000	-		EFB2_04379	0.59	-1.6
4,604,000	-		EFB2_04379	0.59	-1.9
4,604,046	+		EFB2_04379	0.62	-1.1
4,604,046	+		EFB2_04379	0.62	+1.2
4,604,046	+		EFB2_04379	0.62	-0.9
4,604,047	-		EFB2_04379	0.62	-2.0
4,604,281	-		EFB2_04379	0.75	-0.7
4,604,326	-		EFB2_04379	0.77	-2.6
4,604,326	-		EFB2_04379	0.77	-2.0
4,604,329	+		EFB2_04379	0.77	-1.8
4,604,329	+		EFB2_04379	0.77	-0.7
4,604,329	+		EFB2_04379	0.77	+0.3
4,604,329	+		EFB2_04379	0.77	+1.4
4,604,329	+		EFB2_04379	0.77	+0.2
4,604,329	+		EFB2_04379	0.77	-1.9
4,604,329	+		EFB2_04379	0.77	-2.2
4,604,329	+		EFB2_04379	0.77	+2.2
4,604,330	-		EFB2_04379	0.77	-2.0
4,604,330	-		EFB2_04379	0.77	-0.6
4,604,330	-		EFB2_04379	0.77	+0.0
4,604,330	-		EFB2_04379	0.77	-2.2
4,604,330	-		EFB2_04379	0.77	-1.6
4,604,330	-		EFB2_04379	0.77	-0.9
4,604,334	+		EFB2_04379	0.78	+1.1
4,604,334	+		EFB2_04379	0.78	-2.6
4,604,334	+		EFB2_04379	0.78	+0.1
4,604,334	+		EFB2_04379	0.78	-2.3
4,604,335	-		EFB2_04379	0.78	-1.3
4,604,443	+		EFB2_04379	0.84	+0.1
4,604,443	+		EFB2_04379	0.84	-1.7
4,604,443	+		EFB2_04379	0.84	+0.5
4,604,443	+		EFB2_04379	0.84	-2.9
4,604,443	+		EFB2_04379	0.84	-0.2
4,604,443	+		EFB2_04379	0.84	-2.1
4,604,443	+		EFB2_04379	0.84	-1.9
4,604,443	+		EFB2_04379	0.84	+0.3
4,604,443	+		EFB2_04379	0.84	-2.0
4,604,443	+		EFB2_04379	0.84	+0.8
4,604,444	-		EFB2_04379	0.84	+1.6
4,604,484	+		EFB2_04379	0.86	-2.0
4,604,484	+		EFB2_04379	0.86	-0.3
4,604,484	+		EFB2_04379	0.86	+0.2
4,604,484	+		EFB2_04379	0.86	+0.1
4,604,484	+		EFB2_04379	0.86	-0.9
4,604,484	+		EFB2_04379	0.86	-1.1
4,604,484	+		EFB2_04379	0.86	-1.2
4,604,484	+		EFB2_04379	0.86	-0.3
4,604,484	+		EFB2_04379	0.86	-1.1
4,604,484	+		EFB2_04379	0.86	-0.8
4,604,484	+		EFB2_04379	0.86	-0.9
4,604,484	+		EFB2_04379	0.86	-3.3
4,604,485	-		EFB2_04379	0.86	-3.1
4,604,485	-		EFB2_04379	0.86	-1.9
4,604,485	-		EFB2_04379	0.86	-0.3
4,604,485	-		EFB2_04379	0.86	-0.9
4,604,485	-		EFB2_04379	0.86	-4.3
4,604,485	-		EFB2_04379	0.86	-0.2
4,604,485	-		EFB2_04379	0.86	+0.3
4,604,485	-		EFB2_04379	0.86	-0.3
4,604,508	+		EFB2_04379	0.87	+0.1
4,604,508	+		EFB2_04379	0.87	+1.2
4,604,508	+		EFB2_04379	0.87	-0.6
4,604,508	+		EFB2_04379	0.87	-1.4
4,604,508	+		EFB2_04379	0.87	-0.5
4,604,508	+		EFB2_04379	0.87	-0.8
4,604,508	+		EFB2_04379	0.87	-2.4
4,604,509	-		EFB2_04379	0.87	-0.7
4,604,509	-		EFB2_04379	0.87	-3.6
4,604,509	-		EFB2_04379	0.87	-0.6
4,604,509	-		EFB2_04379	0.87	-0.1
4,604,509	-		EFB2_04379	0.87	-0.4
4,604,509	-		EFB2_04379	0.87	+0.3
4,604,626	+				-1.3
4,604,626	+				-0.4
4,604,626	+				-0.9
4,604,627	-				-0.5
4,604,627	-				-4.3
4,604,627	-				+0.3
4,604,643	+				-0.5
4,604,643	+				-1.5
4,604,643	+				-1.2
4,604,643	+				+2.5
4,604,643	+				-0.9
4,604,644	-				-0.8
4,604,644	-				+0.8
4,604,644	-				+1.0
4,604,644	-				-0.6
4,604,644	-				-0.7
4,604,644	-				-0.7
4,604,646	+				-1.5
4,604,646	+				-0.2
4,604,646	+				-2.0
4,604,646	+				-0.5
4,604,646	+				-2.3
4,604,646	+				-2.1
4,604,646	+				-0.7
4,604,647	-				-1.9
4,604,647	-				-2.5
4,604,647	-				-2.6
4,604,647	-				+2.1
4,604,661	+				-0.8
4,604,661	+				+1.3
4,604,661	+				+0.3
4,604,661	+				-0.3
4,604,662	-				-1.4
4,604,662	-				-1.0
4,604,662	-				+0.2
4,604,662	-				-0.6
4,604,662	-				-1.7
4,604,662	-				-0.7
4,604,662	-				+0.0
4,604,662	-				+0.3
4,604,662	-				-1.1
4,604,662	-				-0.2
4,604,671	+				-2.7
4,604,671	+				+0.0
4,604,672	-				-2.8
4,604,715	+				-0.4
4,604,715	+				-0.2
4,604,716	-				-2.1
4,604,771	+				-1.6
4,604,771	+				-0.2
4,604,772	-				+0.5
4,604,772	-				+0.8
4,604,773	+				-3.5
4,604,800	+				-0.8
4,604,801	-				-1.6
4,604,801	-				-1.5
4,604,810	+		EFB2_04380	0.11	-2.3
4,604,810	+		EFB2_04380	0.11	-0.7
4,604,810	+		EFB2_04380	0.11	+1.3
4,604,810	+		EFB2_04380	0.11	-0.1
4,604,810	+		EFB2_04380	0.11	-0.4
4,604,810	+		EFB2_04380	0.11	-2.5
4,604,810	+		EFB2_04380	0.11	+0.4
4,604,810	+		EFB2_04380	0.11	-0.3
4,604,811	-		EFB2_04380	0.11	-0.4
4,604,811	-		EFB2_04380	0.11	+0.2
4,604,811	-		EFB2_04380	0.11	-1.4
4,604,811	-		EFB2_04380	0.11	-0.9
4,604,811	-		EFB2_04380	0.11	-0.8
4,604,811	-		EFB2_04380	0.11	-0.2
4,604,811	-		EFB2_04380	0.11	+0.4
4,604,811	-		EFB2_04380	0.11	-0.9
4,604,811	-		EFB2_04380	0.11	+1.4
4,604,811	-		EFB2_04380	0.11	-1.5
4,604,811	-		EFB2_04380	0.11	+1.2
4,604,811	-		EFB2_04380	0.11	-2.1
4,604,822	+		EFB2_04380	0.12	-0.8
4,604,822	+		EFB2_04380	0.12	+0.4
4,604,822	+		EFB2_04380	0.12	-1.9
4,604,822	+		EFB2_04380	0.12	-0.5
4,604,823	-		EFB2_04380	0.12	-0.7
4,604,823	-		EFB2_04380	0.12	-0.4
4,604,823	-		EFB2_04380	0.12	+1.0
4,604,823	-		EFB2_04380	0.12	-0.1
4,604,833	+		EFB2_04380	0.14	-0.6
4,604,833	+		EFB2_04380	0.14	-0.9
4,604,833	+		EFB2_04380	0.14	-2.2
4,604,833	+		EFB2_04380	0.14	-3.3
4,604,833	+		EFB2_04380	0.14	-1.6
4,604,833	+		EFB2_04380	0.14	+0.4
4,604,833	+		EFB2_04380	0.14	-2.2
4,604,833	+		EFB2_04380	0.14	-1.9
4,604,833	+		EFB2_04380	0.14	-2.9
4,604,833	+		EFB2_04380	0.14	-2.9
4,604,833	+		EFB2_04380	0.14	+1.0
4,604,834	-		EFB2_04380	0.14	-1.2
4,604,834	-		EFB2_04380	0.14	-3.4
4,604,834	-		EFB2_04380	0.14	-3.7
4,604,834	-		EFB2_04380	0.14	-2.6
4,604,834	-		EFB2_04380	0.14	+0.2
4,604,834	-		EFB2_04380	0.14	+1.3
4,604,834	-		EFB2_04380	0.14	-1.6
4,604,834	-		EFB2_04380	0.14	-0.0
4,604,834	-		EFB2_04380	0.14	-2.7
4,604,834	-		EFB2_04380	0.14	-0.7
4,604,841	+		EFB2_04380	0.15	-0.9
4,604,841	+		EFB2_04380	0.15	-0.6
4,604,858	+		EFB2_04380	0.17	+0.2
4,604,858	+		EFB2_04380	0.17	+0.0
4,604,858	+		EFB2_04380	0.17	+1.0
4,604,858	+		EFB2_04380	0.17	-0.8
4,604,859	-		EFB2_04380	0.17	-0.7
4,604,859	-		EFB2_04380	0.17	+0.1
4,604,859	-		EFB2_04380	0.17	+1.8
4,604,859	-		EFB2_04380	0.17	-1.8
4,604,859	-		EFB2_04380	0.17	+0.7
4,604,859	-		EFB2_04380	0.17	+1.1
4,604,859	-		EFB2_04380	0.17	+1.0
4,604,859	-		EFB2_04380	0.17	-2.1
4,604,892	-		EFB2_04380	0.22	-1.5
4,604,892	-		EFB2_04380	0.22	-0.7
4,604,892	-		EFB2_04380	0.22	-0.0
4,604,965	+		EFB2_04380	0.32	-0.5
4,604,965	+		EFB2_04380	0.32	+2.3
4,604,965	+		EFB2_04380	0.32	-0.1
4,604,966	-		EFB2_04380	0.32	-3.1
4,604,966	-		EFB2_04380	0.32	+0.1
4,604,966	-		EFB2_04380	0.32	+0.1
4,604,966	-		EFB2_04380	0.32	-1.5
4,604,966	-		EFB2_04380	0.32	-2.9
4,604,966	-		EFB2_04380	0.32	+0.7
4,604,966	-		EFB2_04380	0.32	+0.2
4,604,984	+		EFB2_04380	0.34	+3.1
4,604,984	+		EFB2_04380	0.34	+1.0
4,604,984	+		EFB2_04380	0.34	-1.0
4,604,984	+		EFB2_04380	0.34	-3.5
4,604,984	+		EFB2_04380	0.34	-1.4
4,604,985	-		EFB2_04380	0.34	-0.5
4,604,985	-		EFB2_04380	0.34	-2.1
4,604,985	-		EFB2_04380	0.34	-0.9
4,604,985	-		EFB2_04380	0.34	-0.1
4,604,985	-		EFB2_04380	0.34	-0.5
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