Strain Fitness in Escherichia fergusonii Becca around EFB2_04320

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,544,620	+		EFB2_04318	0.86	+0.6
4,544,620	+		EFB2_04318	0.86	-1.9
4,544,621	-		EFB2_04318	0.86	+0.2
4,544,621	-		EFB2_04318	0.86	-1.2
4,544,621	-		EFB2_04318	0.86	+0.7
4,544,621	-		EFB2_04318	0.86	-0.2
4,544,621	-		EFB2_04318	0.86	+0.3
4,544,630	+		EFB2_04318	0.87	+0.7
4,544,631	-		EFB2_04318	0.87	-1.9
4,544,681	+				+0.1
4,544,682	-				+0.1
4,544,682	-				-1.2
4,544,730	-				-1.2
4,544,771	+				+2.1
4,544,771	+				-0.2
4,544,771	+				-0.4
4,544,771	+				-1.5
4,544,772	-				-0.2
4,544,772	-				-0.3
4,544,775	+				-0.9
4,544,775	+				+0.6
4,544,775	+				+0.2
4,544,775	+				+0.4
4,544,775	+				+0.6
4,544,776	-				+1.3
4,544,776	-				-2.0
4,544,776	-				+0.5
4,544,776	-				+0.6
4,544,776	-				+0.1
4,544,776	-				+1.3
4,544,786	+				+0.5
4,544,786	+				-0.2
4,544,786	+				-1.0
4,544,786	+				-0.7
4,544,787	-				-0.0
4,544,787	-				+0.5
4,544,790	+				-2.4
4,544,790	+				-1.2
4,544,790	+				+0.2
4,544,790	+				+0.4
4,544,790	+				-0.1
4,544,791	-				-0.9
4,544,791	-				+0.6
4,544,791	-				+0.5
4,544,791	-				+1.7
4,544,791	-				-1.9
4,544,797	+				+0.2
4,544,797	+				+1.0
4,544,798	-				+0.0
4,544,798	-				-0.1
4,544,799	+				-1.2
4,544,799	+				-1.8
4,544,799	+				-0.1
4,544,799	+				+1.1
4,544,799	+				+2.5
4,544,800	-				-0.5
4,544,800	-				-0.7
4,544,843	+				-0.4
4,544,843	+				-0.5
4,544,844	-				+0.2
4,544,844	-				+0.7
4,544,854	+				+0.7
4,544,855	-				+0.7
4,544,855	-				+2.8
4,544,855	-				-1.4
4,544,861	+				-1.0
4,544,861	+				+0.1
4,544,861	+				-0.9
4,544,861	+				+1.1
4,544,861	+				+0.8
4,544,861	+				-1.7
4,544,861	+				+0.1
4,544,862	-				+1.8
4,544,862	-				+0.8
4,544,862	-				-1.6
4,544,862	-				-1.5
4,544,862	-				+1.1
4,544,862	-				+1.8
4,544,862	-				-0.1
4,544,862	-				+1.6
4,544,862	-				+0.3
4,544,869	-				-1.6
4,544,884	+				-1.2
4,544,884	+				-0.7
4,544,884	+				+0.8
4,544,884	+				-2.2
4,544,884	+				+0.9
4,544,885	-				+0.4
4,544,885	-				+0.6
4,544,885	-				+0.8
4,544,885	-				+0.2
4,544,903	+				-0.3
4,544,903	+				+0.4
4,544,903	+				-1.8
4,544,904	-				-3.2
4,544,904	-				-0.1
4,544,904	-				+0.5
4,544,904	-				-0.9
4,544,904	-				-1.7
4,544,930	+		EFB2_04319	0.10	-0.4
4,544,930	+		EFB2_04319	0.10	+1.7
4,544,931	-		EFB2_04319	0.10	+0.2
4,544,934	+		EFB2_04319	0.11	+0.8
4,544,934	+		EFB2_04319	0.11	-0.3
4,544,934	+		EFB2_04319	0.11	-0.2
4,544,934	+		EFB2_04319	0.11	+0.8
4,544,934	+		EFB2_04319	0.11	-0.3
4,544,934	+		EFB2_04319	0.11	+1.5
4,544,934	+		EFB2_04319	0.11	+1.3
4,544,934	+		EFB2_04319	0.11	-1.4
4,544,934	+		EFB2_04319	0.11	+0.6
4,544,934	+		EFB2_04319	0.11	+0.7
4,544,934	+		EFB2_04319	0.11	+2.3
4,544,934	+		EFB2_04319	0.11	-0.4
4,544,935	-		EFB2_04319	0.11	-1.5
4,544,935	-		EFB2_04319	0.11	+1.5
4,544,935	-		EFB2_04319	0.11	+0.3
4,544,935	-		EFB2_04319	0.11	-0.0
4,544,935	-		EFB2_04319	0.11	-0.7
4,544,935	-		EFB2_04319	0.11	-2.7
4,544,935	-		EFB2_04319	0.11	-3.6
4,544,935	-		EFB2_04319	0.11	-1.1
4,544,935	-		EFB2_04319	0.11	-0.9
4,544,935	-		EFB2_04319	0.11	+1.8
4,544,935	-		EFB2_04319	0.11	+0.9
4,544,935	-		EFB2_04319	0.11	-2.4
4,544,935	-		EFB2_04319	0.11	+1.9
4,544,935	-		EFB2_04319	0.11	+0.5
4,544,935	-		EFB2_04319	0.11	+0.2
4,544,935	-		EFB2_04319	0.11	+0.8
4,544,935	-		EFB2_04319	0.11	-2.0
4,544,936	-		EFB2_04319	0.11	-0.4
4,544,939	+		EFB2_04319	0.12	+0.5
4,544,939	+		EFB2_04319	0.12	+0.1
4,544,940	-		EFB2_04319	0.12	-2.5
4,544,940	-		EFB2_04319	0.12	+1.8
4,544,946	+		EFB2_04319	0.13	+0.6
4,544,946	+		EFB2_04319	0.13	+0.1
4,544,946	+		EFB2_04319	0.13	-1.1
4,544,947	-		EFB2_04319	0.13	+0.8
4,544,947	-		EFB2_04319	0.13	+0.1
4,544,947	-		EFB2_04319	0.13	-0.6
4,544,947	-		EFB2_04319	0.13	+1.0
4,544,990	+		EFB2_04319	0.19	+1.0
4,544,990	+		EFB2_04319	0.19	-1.5
4,544,990	+		EFB2_04319	0.19	+1.0
4,544,990	+		EFB2_04319	0.19	-0.4
4,544,990	+		EFB2_04319	0.19	-3.4
4,544,990	+		EFB2_04319	0.19	-0.4
4,544,991	-		EFB2_04319	0.19	+0.7
4,545,098	+		EFB2_04319	0.36	-1.4
4,545,098	+		EFB2_04319	0.36	-0.2
4,545,098	+		EFB2_04319	0.36	+0.6
4,545,098	+		EFB2_04319	0.36	-1.5
4,545,098	+		EFB2_04319	0.36	-0.0
4,545,098	+		EFB2_04319	0.36	-0.9
4,545,099	-		EFB2_04319	0.36	-0.7
4,545,099	-		EFB2_04319	0.36	-0.8
4,545,099	-		EFB2_04319	0.36	-0.3
4,545,099	-		EFB2_04319	0.36	-0.2
4,545,099	-		EFB2_04319	0.36	-1.1
4,545,099	-		EFB2_04319	0.36	+0.9
4,545,099	-		EFB2_04319	0.36	+2.7
4,545,099	-		EFB2_04319	0.36	+0.9
4,545,108	+		EFB2_04319	0.37	+0.4
4,545,158	+		EFB2_04319	0.45	+1.4
4,545,213	+		EFB2_04319	0.53	+0.8
4,545,213	+		EFB2_04319	0.53	+0.3
4,545,214	-		EFB2_04319	0.53	+0.6
4,545,214	-		EFB2_04319	0.53	+0.5
4,545,221	+		EFB2_04319	0.54	-2.0
4,545,221	+		EFB2_04319	0.54	-0.2
4,545,221	+		EFB2_04319	0.54	+2.1
4,545,221	+		EFB2_04319	0.54	+0.1
4,545,221	+		EFB2_04319	0.54	+0.7
4,545,221	+		EFB2_04319	0.54	-0.4
4,545,221	+		EFB2_04319	0.54	-2.4
4,545,221	+		EFB2_04319	0.54	+0.1
4,545,221	+		EFB2_04319	0.54	-0.6
4,545,221	+		EFB2_04319	0.54	+2.2
4,545,222	-		EFB2_04319	0.54	-0.1
4,545,222	-		EFB2_04319	0.54	-1.2
4,545,222	-		EFB2_04319	0.54	-1.9
4,545,222	-		EFB2_04319	0.54	+0.8
4,545,222	-		EFB2_04319	0.54	-2.6
4,545,222	-		EFB2_04319	0.54	+0.4
4,545,222	-		EFB2_04319	0.54	+1.1
4,545,222	-		EFB2_04319	0.54	-2.3
4,545,284	+		EFB2_04319	0.64	+0.6
4,545,284	+		EFB2_04319	0.64	+0.7
4,545,284	+		EFB2_04319	0.64	-0.9
4,545,285	-		EFB2_04319	0.64	+0.6
4,545,285	-		EFB2_04319	0.64	+0.9
4,545,325	+		EFB2_04319	0.70	-0.5
4,545,326	-		EFB2_04319	0.70	+0.6
4,545,326	-		EFB2_04319	0.70	+0.1
4,545,326	-		EFB2_04319	0.70	+1.1
4,545,386	+		EFB2_04319	0.79	+2.6
4,545,386	+		EFB2_04319	0.79	-3.0
4,545,387	-		EFB2_04319	0.79	+1.0
4,545,432	+		EFB2_04319	0.86	+0.8
4,545,432	+		EFB2_04319	0.86	-2.5
4,545,432	+		EFB2_04319	0.86	-0.0
4,545,432	+		EFB2_04319	0.86	-0.2
4,545,432	+		EFB2_04319	0.86	-0.8
4,545,432	+		EFB2_04319	0.86	+1.2
4,545,432	+		EFB2_04319	0.86	-0.1
4,545,432	+		EFB2_04319	0.86	+1.3
4,545,432	+		EFB2_04319	0.86	+0.1
4,545,432	+		EFB2_04319	0.86	-0.2
4,545,432	+		EFB2_04319	0.86	+0.5
4,545,432	+		EFB2_04319	0.86	-2.0
4,545,432	+		EFB2_04319	0.86	-0.6
4,545,432	+		EFB2_04319	0.86	+1.0
4,545,432	+		EFB2_04319	0.86	-0.3
4,545,432	+		EFB2_04319	0.86	+0.7
4,545,432	+		EFB2_04319	0.86	+1.0
4,545,432	+		EFB2_04319	0.86	-0.7
4,545,432	+		EFB2_04319	0.86	-2.0
4,545,432	+		EFB2_04319	0.86	-0.7
4,545,432	+		EFB2_04319	0.86	+0.7
4,545,432	+		EFB2_04319	0.86	+0.1
4,545,432	+		EFB2_04319	0.86	-0.0
4,545,432	+		EFB2_04319	0.86	+0.6
4,545,432	+		EFB2_04319	0.86	+0.1
4,545,432	+		EFB2_04319	0.86	-0.5
4,545,432	+		EFB2_04319	0.86	-0.3
4,545,432	+		EFB2_04319	0.86	-1.6
4,545,432	+		EFB2_04319	0.86	+0.1
4,545,432	+		EFB2_04319	0.86	-1.0
4,545,432	+		EFB2_04319	0.86	-0.4
4,545,432	+		EFB2_04319	0.86	-1.8
4,545,433	-		EFB2_04319	0.86	+0.5
4,545,433	-		EFB2_04319	0.86	-0.5
4,545,433	-		EFB2_04319	0.86	+0.7
4,545,433	-		EFB2_04319	0.86	-1.2
4,545,433	-		EFB2_04319	0.86	-1.3
4,545,433	-		EFB2_04319	0.86	+1.5
4,545,433	-		EFB2_04319	0.86	-0.9
4,545,433	-		EFB2_04319	0.86	+0.8
4,545,433	-		EFB2_04319	0.86	+0.9
4,545,433	-		EFB2_04319	0.86	-0.1
4,545,433	-		EFB2_04319	0.86	+0.0
4,545,433	-		EFB2_04319	0.86	-1.2
4,545,433	-		EFB2_04319	0.86	-1.0
4,545,433	-		EFB2_04319	0.86	+0.1
4,545,433	-		EFB2_04319	0.86	+0.3
4,545,433	-		EFB2_04319	0.86	-3.4
4,545,433	-		EFB2_04319	0.86	+0.6
4,545,433	-		EFB2_04319	0.86	-0.0
4,545,433	-		EFB2_04319	0.86	-0.5
4,545,433	-		EFB2_04319	0.86	+0.5
4,545,433	-		EFB2_04319	0.86	+1.3
4,545,433	-		EFB2_04319	0.86	+0.8
4,545,433	-		EFB2_04319	0.86	+0.5
4,545,434	+		EFB2_04319	0.86	+0.6
4,545,435	-		EFB2_04319	0.86	+0.5
4,545,443	+		EFB2_04319	0.88	-1.3
4,545,443	+		EFB2_04319	0.88	+0.2
4,545,444	-		EFB2_04319	0.88	-1.2
4,545,444	-		EFB2_04319	0.88	+1.4
4,545,444	-		EFB2_04319	0.88	-0.4
4,545,493	+				-0.3
4,545,493	+				-1.0
4,545,493	+				-1.0
4,545,493	+				+0.1
4,545,493	+				+0.1
4,545,493	+				+0.2
4,545,493	+				+0.4
4,545,493	+				+2.1
4,545,493	+				+0.0
4,545,493	+				+0.8
4,545,493	+				-0.7
4,545,493	+				+0.1
4,545,493	+				+1.3
4,545,493	+				-0.9
4,545,494	-				-0.4
4,545,494	-				+0.2
4,545,494	-				-0.5
4,545,494	-				-0.3
4,545,494	-				+0.9
4,545,494	-				-0.9
4,545,494	-				+1.7
4,545,494	-				-2.5
4,545,494	-				-0.0
4,545,494	-				-0.1
4,545,494	-				-0.9
4,545,494	-				-0.3
4,545,494	-				-0.6
4,545,494	-				+0.2
4,545,494	-				+0.5
4,545,494	-				-0.9
4,545,494	-				-0.5
4,545,494	-				-0.3
4,545,496	+				-0.9
4,545,496	+				-0.3
4,545,496	+				+1.7
4,545,496	+				+1.6
4,545,496	+				-0.2
4,545,496	+				+0.5
4,545,496	+				+0.4
4,545,497	-				+0.2
4,545,497	-				-1.4
4,545,497	-				+0.8
4,545,497	-				+1.3
4,545,497	-				+0.2
4,545,497	-				-1.7
4,545,528	-				-0.6
4,545,528	-				-0.1
4,545,561	+				+2.2
4,545,561	+				+1.2
4,545,561	+				+2.6
4,545,561	+				+0.0
4,545,562	-				-1.1
4,545,562	-				+1.3
4,545,562	-				+0.5
4,545,562	-				+2.1
4,545,570	+				+0.6
4,545,571	-				-0.5
4,545,599	-				-0.5
4,545,605	-				-0.7
4,545,715	+		EFB2_04320	0.10	+1.2
4,545,715	+		EFB2_04320	0.10	+0.6
4,545,715	+		EFB2_04320	0.10	+0.0
4,545,715	+		EFB2_04320	0.10	-0.3
4,545,715	+		EFB2_04320	0.10	+0.8
4,545,715	+		EFB2_04320	0.10	+2.5
4,545,715	+		EFB2_04320	0.10	+0.8
4,545,715	+		EFB2_04320	0.10	+1.2
4,545,715	+		EFB2_04320	0.10	-1.7
4,545,715	+		EFB2_04320	0.10	-0.5
4,545,715	+		EFB2_04320	0.10	+1.7
4,545,715	+		EFB2_04320	0.10	-0.3
4,545,715	+		EFB2_04320	0.10	+2.2
4,545,715	+		EFB2_04320	0.10	+0.9
4,545,715	+		EFB2_04320	0.10	+0.0
4,545,715	+		EFB2_04320	0.10	+0.0
4,545,715	+		EFB2_04320	0.10	+0.6
4,545,715	+		EFB2_04320	0.10	-0.9
4,545,715	+		EFB2_04320	0.10	+0.6
4,545,715	+		EFB2_04320	0.10	+0.5
4,545,715	+		EFB2_04320	0.10	+1.0
4,545,715	+		EFB2_04320	0.10	-0.4
4,545,716	-		EFB2_04320	0.10	-1.0
4,545,716	-		EFB2_04320	0.10	-0.2
4,545,716	-		EFB2_04320	0.10	-0.1
4,545,716	-		EFB2_04320	0.10	-0.7
4,545,716	-		EFB2_04320	0.10	-1.9
4,545,716	-		EFB2_04320	0.10	-0.1
4,545,716	-		EFB2_04320	0.10	+0.5
4,545,716	-		EFB2_04320	0.10	+0.3
4,545,716	-		EFB2_04320	0.10	-0.9
4,545,716	-		EFB2_04320	0.10	+1.1
4,545,716	-		EFB2_04320	0.10	+0.5
4,545,716	-		EFB2_04320	0.10	-1.0
4,545,716	-		EFB2_04320	0.10	+0.4
4,545,716	-		EFB2_04320	0.10	-1.0
4,545,716	-		EFB2_04320	0.10	-0.0
4,545,716	-		EFB2_04320	0.10	-1.0
4,545,716	-		EFB2_04320	0.10	+0.7
4,545,716	-		EFB2_04320	0.10	+0.1
4,545,716	-		EFB2_04320	0.10	-0.0
4,545,716	-		EFB2_04320	0.10	-1.8
4,545,716	-		EFB2_04320	0.10	-1.9
4,545,716	-		EFB2_04320	0.10	-1.8
4,545,716	-		EFB2_04320	0.10	-3.1
4,545,719	+		EFB2_04320	0.11	-0.6
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