Strain Fitness in Escherichia fergusonii Becca around EFB2_04305

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,526,749	+		EFB2_04304	0.54	+0.5
4,526,749	+		EFB2_04304	0.54	+0.8
4,526,791	+		EFB2_04304	0.56	-0.3
4,526,791	+		EFB2_04304	0.56	-0.6
4,526,791	+		EFB2_04304	0.56	+0.0
4,526,791	+		EFB2_04304	0.56	-0.3
4,526,791	+		EFB2_04304	0.56	+0.4
4,526,792	-		EFB2_04304	0.57	+0.4
4,526,792	-		EFB2_04304	0.57	-2.0
4,526,792	-		EFB2_04304	0.57	-0.3
4,526,792	-		EFB2_04304	0.57	+0.5
4,526,792	-		EFB2_04304	0.57	-1.0
4,526,792	-		EFB2_04304	0.57	-0.9
4,526,820	-		EFB2_04304	0.58	+0.3
4,526,896	+		EFB2_04304	0.63	+0.6
4,526,896	+		EFB2_04304	0.63	-0.7
4,526,896	+		EFB2_04304	0.63	-2.3
4,526,896	+		EFB2_04304	0.63	-1.5
4,526,896	+		EFB2_04304	0.63	-0.1
4,526,896	+		EFB2_04304	0.63	-2.3
4,526,896	+		EFB2_04304	0.63	-0.8
4,526,897	-		EFB2_04304	0.64	+0.6
4,526,897	-		EFB2_04304	0.64	+0.3
4,526,897	-		EFB2_04304	0.64	-0.1
4,526,897	-		EFB2_04304	0.64	+0.9
4,526,897	-		EFB2_04304	0.64	-0.8
4,526,897	-		EFB2_04304	0.64	+1.5
4,526,897	-		EFB2_04304	0.64	-1.3
4,526,897	-		EFB2_04304	0.64	-1.3
4,526,897	-		EFB2_04304	0.64	+1.1
4,526,897	-		EFB2_04304	0.64	+0.1
4,526,897	-		EFB2_04304	0.64	+1.1
4,526,897	-		EFB2_04304	0.64	+0.3
4,526,897	-		EFB2_04304	0.64	-2.6
4,526,897	-		EFB2_04304	0.64	-2.1
4,526,897	-		EFB2_04304	0.64	-1.2
4,526,897	-		EFB2_04304	0.64	+2.3
4,526,902	+		EFB2_04304	0.64	+0.7
4,526,902	+		EFB2_04304	0.64	-0.5
4,526,902	+		EFB2_04304	0.64	-0.9
4,526,902	+		EFB2_04304	0.64	-0.6
4,526,903	-		EFB2_04304	0.64	+0.9
4,526,903	-		EFB2_04304	0.64	-0.5
4,526,903	-		EFB2_04304	0.64	+0.5
4,526,903	-		EFB2_04304	0.64	-1.6
4,526,903	-		EFB2_04304	0.64	-0.0
4,526,903	-		EFB2_04304	0.64	+1.1
4,526,903	-		EFB2_04304	0.64	-1.0
4,526,903	-		EFB2_04304	0.64	-0.1
4,526,903	-		EFB2_04304	0.64	-0.3
4,527,047	+		EFB2_04304	0.74	-1.7
4,527,047	+		EFB2_04304	0.74	+1.1
4,527,047	+		EFB2_04304	0.74	+0.4
4,527,048	-		EFB2_04304	0.74	+0.5
4,527,048	-		EFB2_04304	0.74	+1.2
4,527,048	-		EFB2_04304	0.74	+1.1
4,527,094	+		EFB2_04304	0.77	+0.6
4,527,094	+		EFB2_04304	0.77	-2.0
4,527,094	+		EFB2_04304	0.77	-0.7
4,527,094	+		EFB2_04304	0.77	+0.4
4,527,095	-		EFB2_04304	0.77	+0.2
4,527,095	-		EFB2_04304	0.77	+0.1
4,527,095	-		EFB2_04304	0.77	+1.0
4,527,095	-		EFB2_04304	0.77	+0.3
4,527,095	-		EFB2_04304	0.77	+0.8
4,527,124	+		EFB2_04304	0.79	+0.1
4,527,124	+		EFB2_04304	0.79	-1.1
4,527,124	+		EFB2_04304	0.79	+0.2
4,527,124	+		EFB2_04304	0.79	-0.6
4,527,124	+		EFB2_04304	0.79	+1.2
4,527,124	+		EFB2_04304	0.79	+0.0
4,527,124	+		EFB2_04304	0.79	-2.5
4,527,124	+		EFB2_04304	0.79	-0.7
4,527,125	-		EFB2_04304	0.79	-1.2
4,527,125	-		EFB2_04304	0.79	+0.0
4,527,125	-		EFB2_04304	0.79	-0.7
4,527,125	-		EFB2_04304	0.79	+1.2
4,527,125	-		EFB2_04304	0.79	-1.9
4,527,125	-		EFB2_04304	0.79	-3.2
4,527,125	-		EFB2_04304	0.79	+0.5
4,527,125	-		EFB2_04304	0.79	-0.6
4,527,125	-		EFB2_04304	0.79	-1.1
4,527,125	-		EFB2_04304	0.79	+0.9
4,527,130	+		EFB2_04304	0.79	-2.6
4,527,130	+		EFB2_04304	0.79	-1.0
4,527,130	+		EFB2_04304	0.79	-0.9
4,527,130	+		EFB2_04304	0.79	-0.5
4,527,130	+		EFB2_04304	0.79	+0.6
4,527,130	+		EFB2_04304	0.79	-0.1
4,527,130	+		EFB2_04304	0.79	-1.8
4,527,130	+		EFB2_04304	0.79	-0.4
4,527,130	+		EFB2_04304	0.79	-3.7
4,527,130	+		EFB2_04304	0.79	+0.5
4,527,130	+		EFB2_04304	0.79	+0.1
4,527,130	+		EFB2_04304	0.79	-0.4
4,527,130	+		EFB2_04304	0.79	+0.9
4,527,131	-		EFB2_04304	0.79	+0.2
4,527,131	-		EFB2_04304	0.79	-0.7
4,527,131	-		EFB2_04304	0.79	-0.1
4,527,131	-		EFB2_04304	0.79	-1.4
4,527,131	-		EFB2_04304	0.79	+1.4
4,527,131	-		EFB2_04304	0.79	-0.9
4,527,131	-		EFB2_04304	0.79	-3.6
4,527,131	-		EFB2_04304	0.79	-0.4
4,527,131	-		EFB2_04304	0.79	+0.3
4,527,131	-		EFB2_04304	0.79	-0.8
4,527,131	-		EFB2_04304	0.79	-2.5
4,527,131	-		EFB2_04304	0.79	-1.5
4,527,131	-		EFB2_04304	0.79	-0.4
4,527,131	-		EFB2_04304	0.79	+2.8
4,527,131	-		EFB2_04304	0.79	+0.3
4,527,131	-		EFB2_04304	0.79	-0.2
4,527,131	-		EFB2_04304	0.79	+0.7
4,527,131	-		EFB2_04304	0.79	-0.5
4,527,131	-		EFB2_04304	0.79	-1.5
4,527,131	-		EFB2_04304	0.79	+0.7
4,527,131	-		EFB2_04304	0.79	+1.0
4,527,131	-		EFB2_04304	0.79	-3.2
4,527,136	-		EFB2_04304	0.79	+0.0
4,527,136	-		EFB2_04304	0.79	-0.0
4,527,150	+		EFB2_04304	0.80	-1.6
4,527,151	-		EFB2_04304	0.80	+0.9
4,527,151	-		EFB2_04304	0.80	-0.4
4,527,151	-		EFB2_04304	0.80	+0.3
4,527,151	-		EFB2_04304	0.80	+0.5
4,527,151	-		EFB2_04304	0.80	-1.0
4,527,151	-		EFB2_04304	0.80	-0.2
4,527,158	-		EFB2_04304	0.81	-1.4
4,527,176	+		EFB2_04304	0.82	+0.8
4,527,176	+		EFB2_04304	0.82	-0.4
4,527,177	-		EFB2_04304	0.82	+0.4
4,527,228	+		EFB2_04304	0.86	-0.9
4,527,228	+		EFB2_04304	0.86	-0.5
4,527,228	+		EFB2_04304	0.86	-1.9
4,527,229	-		EFB2_04304	0.86	-0.2
4,527,249	+		EFB2_04304	0.87	+1.1
4,527,249	+		EFB2_04304	0.87	-1.7
4,527,249	+		EFB2_04304	0.87	+0.5
4,527,249	+		EFB2_04304	0.87	+1.1
4,527,250	-		EFB2_04304	0.87	+0.4
4,527,270	-		EFB2_04304	0.88	-3.8
4,527,270	-		EFB2_04304	0.88	+0.0
4,527,271	+		EFB2_04304	0.88	-0.7
4,527,271	+		EFB2_04304	0.88	+0.0
4,527,271	+		EFB2_04304	0.88	+0.7
4,527,271	+		EFB2_04304	0.88	+1.9
4,527,271	+		EFB2_04304	0.88	-0.7
4,527,272	-		EFB2_04304	0.88	-0.9
4,527,272	-		EFB2_04304	0.88	-2.2
4,527,272	-		EFB2_04304	0.88	-3.8
4,527,272	-		EFB2_04304	0.88	-0.5
4,527,272	-		EFB2_04304	0.88	+0.8
4,527,272	-		EFB2_04304	0.88	+0.2
4,527,361	-				-1.1
4,527,370	+				-0.7
4,527,400	+				-0.0
4,527,400	+				-3.2
4,527,400	+				+0.1
4,527,400	+				-0.3
4,527,401	-				-0.1
4,527,401	-				-3.0
4,527,401	-				+2.3
4,527,401	-				-2.0
4,527,401	-				+0.5
4,527,401	-				-2.9
4,527,467	+				-0.1
4,527,467	+				-0.3
4,527,467	+				+0.8
4,527,468	-				-0.2
4,527,481	+				+0.4
4,527,481	+				-0.7
4,527,481	+				-4.0
4,527,481	+				+0.3
4,527,481	+				+2.0
4,527,481	+				+0.2
4,527,481	+				-0.4
4,527,481	+				-2.3
4,527,482	-				+0.8
4,527,482	-				-0.3
4,527,482	-				-3.6
4,527,482	-				-2.2
4,527,498	+				-1.9
4,527,498	+				+0.7
4,527,498	+				-1.4
4,527,498	+				+1.0
4,527,499	-				-0.2
4,527,573	+				-1.3
4,527,573	+				-0.7
4,527,573	+				+0.6
4,527,573	+				-1.0
4,527,573	+				+0.8
4,527,573	+				+0.2
4,527,574	-				+0.9
4,527,574	-				+0.8
4,527,574	-				-2.9
4,527,645	+				-2.5
4,527,645	+				-0.5
4,527,646	-				-1.4
4,527,662	-				+0.5
4,527,684	+				-0.3
4,527,684	+				-1.0
4,527,684	+				-0.5
4,527,684	+				+0.6
4,527,684	+				+0.1
4,527,685	-				-0.1
4,527,685	-				-0.0
4,527,685	-				+0.3
4,527,685	-				-3.3
4,527,712	+				-1.2
4,527,712	+				+1.5
4,527,713	-				-0.4
4,527,713	-				+0.5
4,527,851	+		EFB2_04305	0.20	-1.2
4,527,851	+		EFB2_04305	0.20	-0.2
4,527,851	+		EFB2_04305	0.20	+1.5
4,527,851	+		EFB2_04305	0.20	+0.7
4,527,851	+		EFB2_04305	0.20	-1.8
4,527,852	-		EFB2_04305	0.20	-2.4
4,527,852	-		EFB2_04305	0.20	-0.2
4,527,852	-		EFB2_04305	0.20	-0.1
4,527,852	-		EFB2_04305	0.20	+0.3
4,527,853	+		EFB2_04305	0.20	-0.9
4,527,853	+		EFB2_04305	0.20	+1.6
4,527,853	+		EFB2_04305	0.20	-3.3
4,527,853	+		EFB2_04305	0.20	-0.4
4,527,853	+		EFB2_04305	0.20	+0.5
4,527,853	+		EFB2_04305	0.20	+0.7
4,527,853	+		EFB2_04305	0.20	+0.8
4,527,853	+		EFB2_04305	0.20	-0.2
4,527,853	+		EFB2_04305	0.20	+0.9
4,527,853	+		EFB2_04305	0.20	+0.4
4,527,853	+		EFB2_04305	0.20	+2.5
4,527,853	+		EFB2_04305	0.20	+1.7
4,527,853	+		EFB2_04305	0.20	+3.1
4,527,853	+		EFB2_04305	0.20	+1.0
4,527,853	+		EFB2_04305	0.20	+0.8
4,527,853	+		EFB2_04305	0.20	-1.4
4,527,853	+		EFB2_04305	0.20	+0.2
4,527,853	+		EFB2_04305	0.20	-1.6
4,527,853	+		EFB2_04305	0.20	+0.8
4,527,853	+		EFB2_04305	0.20	+0.9
4,527,853	+		EFB2_04305	0.20	-0.3
4,527,853	+		EFB2_04305	0.20	+3.4
4,527,853	+		EFB2_04305	0.20	+1.1
4,527,853	+		EFB2_04305	0.20	+0.9
4,527,853	+		EFB2_04305	0.20	+0.8
4,527,853	+		EFB2_04305	0.20	-0.6
4,527,853	+		EFB2_04305	0.20	+1.3
4,527,853	+		EFB2_04305	0.20	+0.1
4,527,854	-		EFB2_04305	0.21	+0.5
4,527,854	-		EFB2_04305	0.21	-0.1
4,527,854	-		EFB2_04305	0.21	-0.1
4,527,854	-		EFB2_04305	0.21	-1.2
4,527,854	-		EFB2_04305	0.21	-0.1
4,527,854	-		EFB2_04305	0.21	+2.6
4,527,854	-		EFB2_04305	0.21	+0.4
4,527,854	-		EFB2_04305	0.21	-0.1
4,527,854	-		EFB2_04305	0.21	+0.3
4,527,854	-		EFB2_04305	0.21	+1.5
4,527,854	-		EFB2_04305	0.21	+0.9
4,527,854	-		EFB2_04305	0.21	-0.9
4,527,854	-		EFB2_04305	0.21	+0.2
4,527,854	-		EFB2_04305	0.21	+0.1
4,527,854	-		EFB2_04305	0.21	-3.3
4,527,854	-		EFB2_04305	0.21	+0.3
4,527,854	-		EFB2_04305	0.21	-0.1
4,527,854	-		EFB2_04305	0.21	-1.2
4,527,854	-		EFB2_04305	0.21	+2.2
4,527,854	-		EFB2_04305	0.21	+0.2
4,527,857	+		EFB2_04305	0.21	+1.5
4,527,857	+		EFB2_04305	0.21	+0.4
4,527,857	+		EFB2_04305	0.21	-0.4
4,527,857	+		EFB2_04305	0.21	-0.3
4,527,857	+		EFB2_04305	0.21	+0.2
4,527,857	+		EFB2_04305	0.21	+0.2
4,527,857	+		EFB2_04305	0.21	+0.0
4,527,857	+		EFB2_04305	0.21	+0.2
4,527,857	+		EFB2_04305	0.21	+0.8
4,527,858	-		EFB2_04305	0.21	+1.1
4,527,858	-		EFB2_04305	0.21	+0.2
4,527,858	-		EFB2_04305	0.21	+0.0
4,527,858	-		EFB2_04305	0.21	-2.6
4,527,858	-		EFB2_04305	0.21	+2.0
4,527,858	-		EFB2_04305	0.21	-2.6
4,527,858	-		EFB2_04305	0.21	+0.9
4,527,858	-		EFB2_04305	0.21	-1.0
4,527,858	-		EFB2_04305	0.21	+0.3
4,527,858	-		EFB2_04305	0.21	+1.0
4,527,858	-		EFB2_04305	0.21	-0.5
4,527,858	-		EFB2_04305	0.21	+0.2
4,527,858	-		EFB2_04305	0.21	-0.8
4,527,864	+		EFB2_04305	0.22	+0.5
4,527,865	-		EFB2_04305	0.22	+0.1
4,527,865	-		EFB2_04305	0.22	+0.0
4,527,890	+		EFB2_04305	0.24	-1.6
4,527,890	+		EFB2_04305	0.24	-0.7
4,527,891	-		EFB2_04305	0.24	+0.0
4,527,891	-		EFB2_04305	0.24	-0.5
4,527,920	+		EFB2_04305	0.27	-2.2
4,527,920	+		EFB2_04305	0.27	-0.9
4,527,920	+		EFB2_04305	0.27	-0.2
4,527,920	+		EFB2_04305	0.27	-0.2
4,527,920	+		EFB2_04305	0.27	-1.1
4,527,920	+		EFB2_04305	0.27	-2.3
4,527,921	-		EFB2_04305	0.28	+0.0
4,527,921	-		EFB2_04305	0.28	-0.7
4,527,921	-		EFB2_04305	0.28	-0.9
4,527,964	+		EFB2_04305	0.32	+0.4
4,527,965	-		EFB2_04305	0.32	-1.6
4,528,004	+		EFB2_04305	0.36	-1.0
4,528,005	-		EFB2_04305	0.36	-0.9
4,528,031	+		EFB2_04305	0.39	+0.9
4,528,031	+		EFB2_04305	0.39	-2.9
4,528,031	+		EFB2_04305	0.39	+0.3
4,528,031	+		EFB2_04305	0.39	+1.8
4,528,032	-		EFB2_04305	0.39	+0.2
4,528,032	-		EFB2_04305	0.39	-0.1
4,528,032	-		EFB2_04305	0.39	-1.2
4,528,073	+		EFB2_04305	0.43	-1.1
4,528,074	-		EFB2_04305	0.44	-0.3
4,528,089	+		EFB2_04305	0.45	+1.0
4,528,090	-		EFB2_04305	0.45	-1.8
4,528,112	+		EFB2_04305	0.48	+0.1
4,528,163	+		EFB2_04305	0.53	-0.5
4,528,163	+		EFB2_04305	0.53	-2.0
4,528,163	+		EFB2_04305	0.53	-0.2
4,528,163	+		EFB2_04305	0.53	+2.4
4,528,163	+		EFB2_04305	0.53	-0.0
4,528,163	+		EFB2_04305	0.53	+0.5
4,528,163	+		EFB2_04305	0.53	-1.6
4,528,163	+		EFB2_04305	0.53	+1.0
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