Strain Fitness in Escherichia fergusonii Becca around EFB2_03701

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,869,546	+		EFB2_03699	0.85	+1.4
3,869,567	+		EFB2_03699	0.87	+0.6
3,869,568	-		EFB2_03699	0.87	-0.8
3,869,568	-		EFB2_03699	0.87	+1.9
3,869,568	-		EFB2_03699	0.87	+2.5
3,869,575	+		EFB2_03699	0.88	+0.9
3,869,575	+		EFB2_03699	0.88	-1.5
3,869,576	-		EFB2_03699	0.88	-2.2
3,869,576	-		EFB2_03699	0.88	+0.3
3,869,588	+		EFB2_03699	0.89	-3.4
3,869,588	+		EFB2_03699	0.89	-1.1
3,869,588	+		EFB2_03699	0.89	-0.9
3,869,588	+		EFB2_03699	0.89	+1.2
3,869,588	+		EFB2_03699	0.89	-0.1
3,869,588	+		EFB2_03699	0.89	+0.1
3,869,588	+		EFB2_03699	0.89	+2.0
3,869,588	+		EFB2_03699	0.89	-2.3
3,869,588	+		EFB2_03699	0.89	+0.3
3,869,588	+		EFB2_03699	0.89	+1.4
3,869,588	+		EFB2_03699	0.89	+0.2
3,869,588	+		EFB2_03699	0.89	-0.0
3,869,588	+		EFB2_03699	0.89	+0.2
3,869,588	+		EFB2_03699	0.89	-0.5
3,869,588	+		EFB2_03699	0.89	+2.6
3,869,588	+		EFB2_03699	0.89	+0.7
3,869,588	+		EFB2_03699	0.89	+0.8
3,869,588	+		EFB2_03699	0.89	-2.0
3,869,588	+		EFB2_03699	0.89	+3.2
3,869,588	+		EFB2_03699	0.89	+0.6
3,869,588	+		EFB2_03699	0.89	+0.7
3,869,588	+		EFB2_03699	0.89	-2.9
3,869,589	-		EFB2_03699	0.89	+1.3
3,869,589	-		EFB2_03699	0.89	-0.7
3,869,589	-		EFB2_03699	0.89	-2.1
3,869,589	-		EFB2_03699	0.89	-3.1
3,869,589	-		EFB2_03699	0.89	-0.1
3,869,589	-		EFB2_03699	0.89	+1.3
3,869,589	-		EFB2_03699	0.89	-3.0
3,869,589	-		EFB2_03699	0.89	-2.9
3,869,589	-		EFB2_03699	0.89	-0.3
3,869,592	+		EFB2_03699	0.89	+0.7
3,869,592	+		EFB2_03699	0.89	-1.4
3,869,592	+		EFB2_03699	0.89	-0.1
3,869,592	+		EFB2_03699	0.89	-0.1
3,869,592	+		EFB2_03699	0.89	-0.1
3,869,592	+		EFB2_03699	0.89	+0.3
3,869,592	+		EFB2_03699	0.89	-0.8
3,869,592	+		EFB2_03699	0.89	+0.6
3,869,593	-		EFB2_03699	0.89	-0.4
3,869,593	-		EFB2_03699	0.89	+1.7
3,869,593	-		EFB2_03699	0.89	-0.8
3,869,593	-		EFB2_03699	0.89	+0.3
3,869,593	-		EFB2_03699	0.89	-1.8
3,869,593	-		EFB2_03699	0.89	+2.2
3,869,593	-		EFB2_03699	0.89	+2.4
3,869,593	-		EFB2_03699	0.89	-1.6
3,869,619	+				-3.1
3,869,619	+				+0.7
3,869,619	+				+0.7
3,869,619	+				+1.0
3,869,619	+				+1.2
3,869,619	+				-0.4
3,869,620	-				-0.6
3,869,620	-				-2.2
3,869,656	+				+0.4
3,869,657	-				-0.4
3,869,657	-				+1.2
3,869,676	-				+1.2
3,869,727	+				-0.3
3,869,727	+				+1.4
3,869,728	-				-1.1
3,869,728	-				+1.3
3,869,728	-				+0.4
3,869,728	-				-1.7
3,869,762	-				-0.7
3,869,762	-				+1.0
3,869,774	+				-0.5
3,869,774	+				+0.6
3,869,774	+				-2.5
3,869,774	+				+1.1
3,869,774	+				-0.1
3,869,774	+				+0.4
3,869,774	+				+0.4
3,869,774	+				+0.7
3,869,774	+				+0.9
3,869,774	+				-2.0
3,869,774	+				-0.7
3,869,775	-				-0.3
3,869,775	-				-1.0
3,869,775	-				+0.5
3,869,775	-				+1.0
3,869,775	-				-2.5
3,869,775	-				-2.9
3,869,775	-				-0.2
3,869,820	+				-1.6
3,869,820	+				-0.4
3,869,820	+				-2.1
3,869,821	-				+0.7
3,869,835	+				-2.0
3,869,835	+				+0.7
3,869,835	+				-0.7
3,869,835	+				+0.0
3,869,836	-				-0.3
3,869,836	-				+0.5
3,869,836	-				+1.1
3,869,839	+				-0.3
3,869,839	+				-1.2
3,869,845	+				+0.7
3,869,845	+				+0.4
3,869,845	+				+0.1
3,869,845	+				-1.0
3,869,846	-				+0.7
3,869,846	-				-0.4
3,869,846	-				+1.4
3,869,846	-				+1.4
3,869,859	+		EFB2_03700	0.12	+0.1
3,869,860	-		EFB2_03700	0.12	-1.1
3,869,889	+		EFB2_03700	0.17	+0.6
3,869,890	-		EFB2_03700	0.17	-2.2
3,869,894	+		EFB2_03700	0.17	-0.8
3,869,894	+		EFB2_03700	0.17	-2.3
3,869,894	+		EFB2_03700	0.17	+0.6
3,869,894	+		EFB2_03700	0.17	-1.7
3,869,894	+		EFB2_03700	0.17	+0.4
3,869,894	+		EFB2_03700	0.17	+0.1
3,869,894	+		EFB2_03700	0.17	-0.8
3,869,895	-		EFB2_03700	0.18	-1.1
3,869,895	-		EFB2_03700	0.18	+1.1
3,869,895	-		EFB2_03700	0.18	+0.1
3,869,895	-		EFB2_03700	0.18	+0.9
3,869,895	-		EFB2_03700	0.18	+0.2
3,869,895	-		EFB2_03700	0.18	-1.3
3,869,895	-		EFB2_03700	0.18	-0.5
3,869,895	-		EFB2_03700	0.18	-1.9
3,869,902	+		EFB2_03700	0.19	+0.8
3,869,929	+		EFB2_03700	0.23	-2.7
3,869,930	-		EFB2_03700	0.23	+0.9
3,869,930	-		EFB2_03700	0.23	-0.2
3,869,985	+		EFB2_03700	0.32	+0.0
3,869,985	+		EFB2_03700	0.32	-0.4
3,869,985	+		EFB2_03700	0.32	+0.7
3,869,986	-		EFB2_03700	0.32	-1.4
3,869,986	-		EFB2_03700	0.32	-0.6
3,869,986	-		EFB2_03700	0.32	-1.2
3,869,986	-		EFB2_03700	0.32	+1.1
3,869,999	+		EFB2_03700	0.34	+0.9
3,870,008	+		EFB2_03700	0.36	-1.6
3,870,023	+		EFB2_03700	0.38	+1.0
3,870,023	+		EFB2_03700	0.38	+0.6
3,870,023	+		EFB2_03700	0.38	-3.1
3,870,023	+		EFB2_03700	0.38	-1.5
3,870,023	+		EFB2_03700	0.38	+0.2
3,870,023	+		EFB2_03700	0.38	+0.5
3,870,023	+		EFB2_03700	0.38	-0.7
3,870,023	+		EFB2_03700	0.38	-0.1
3,870,023	+		EFB2_03700	0.38	-0.9
3,870,023	+		EFB2_03700	0.38	-2.2
3,870,023	+		EFB2_03700	0.38	+1.6
3,870,023	+		EFB2_03700	0.38	-0.1
3,870,023	+		EFB2_03700	0.38	-2.9
3,870,023	+		EFB2_03700	0.38	+0.3
3,870,023	+		EFB2_03700	0.38	-0.7
3,870,023	+		EFB2_03700	0.38	-1.0
3,870,023	+		EFB2_03700	0.38	+0.8
3,870,023	+		EFB2_03700	0.38	-1.3
3,870,023	+		EFB2_03700	0.38	-0.2
3,870,024	-		EFB2_03700	0.38	-0.6
3,870,024	-		EFB2_03700	0.38	-2.0
3,870,024	-		EFB2_03700	0.38	+0.3
3,870,024	-		EFB2_03700	0.38	-0.6
3,870,024	-		EFB2_03700	0.38	-0.1
3,870,024	-		EFB2_03700	0.38	-1.4
3,870,024	-		EFB2_03700	0.38	-1.5
3,870,024	-		EFB2_03700	0.38	-0.6
3,870,024	-		EFB2_03700	0.38	-3.1
3,870,024	-		EFB2_03700	0.38	+1.0
3,870,024	-		EFB2_03700	0.38	+0.4
3,870,024	-		EFB2_03700	0.38	-1.5
3,870,024	-		EFB2_03700	0.38	-0.2
3,870,024	-		EFB2_03700	0.38	-0.9
3,870,024	-		EFB2_03700	0.38	-0.6
3,870,024	-		EFB2_03700	0.38	-0.5
3,870,024	-		EFB2_03700	0.38	-0.9
3,870,024	-		EFB2_03700	0.38	-2.0
3,870,024	-		EFB2_03700	0.38	+0.8
3,870,024	-		EFB2_03700	0.38	-0.4
3,870,024	-		EFB2_03700	0.38	-2.2
3,870,025	+		EFB2_03700	0.38	-0.5
3,870,025	+		EFB2_03700	0.38	+0.4
3,870,025	+		EFB2_03700	0.38	-3.3
3,870,026	-		EFB2_03700	0.39	-0.7
3,870,027	+		EFB2_03700	0.39	+0.9
3,870,027	+		EFB2_03700	0.39	+0.2
3,870,027	+		EFB2_03700	0.39	-2.4
3,870,027	+		EFB2_03700	0.39	-0.3
3,870,028	-		EFB2_03700	0.39	-0.6
3,870,028	-		EFB2_03700	0.39	+0.8
3,870,028	-		EFB2_03700	0.39	+1.8
3,870,028	-		EFB2_03700	0.39	+0.7
3,870,028	-		EFB2_03700	0.39	-2.3
3,870,028	-		EFB2_03700	0.39	+0.1
3,870,028	-		EFB2_03700	0.39	+1.3
3,870,057	+		EFB2_03700	0.44	+0.5
3,870,057	+		EFB2_03700	0.44	-1.6
3,870,057	+		EFB2_03700	0.44	+0.7
3,870,057	+		EFB2_03700	0.44	-1.7
3,870,058	-		EFB2_03700	0.44	-1.0
3,870,074	+		EFB2_03700	0.46	-0.5
3,870,074	+		EFB2_03700	0.46	-0.7
3,870,074	+		EFB2_03700	0.46	-2.5
3,870,075	-		EFB2_03700	0.47	-2.1
3,870,075	-		EFB2_03700	0.47	+0.1
3,870,075	-		EFB2_03700	0.47	+0.1
3,870,075	-		EFB2_03700	0.47	+1.2
3,870,099	+		EFB2_03700	0.50	+0.6
3,870,099	+		EFB2_03700	0.50	-2.1
3,870,099	+		EFB2_03700	0.50	-1.8
3,870,099	+		EFB2_03700	0.50	+0.5
3,870,100	-		EFB2_03700	0.51	+1.0
3,870,100	-		EFB2_03700	0.51	+0.6
3,870,119	-		EFB2_03700	0.54	-0.7
3,870,176	+		EFB2_03700	0.63	+1.2
3,870,176	+		EFB2_03700	0.63	-1.0
3,870,176	+		EFB2_03700	0.63	+0.2
3,870,176	+		EFB2_03700	0.63	+0.7
3,870,177	-		EFB2_03700	0.63	-1.6
3,870,177	-		EFB2_03700	0.63	+0.1
3,870,177	-		EFB2_03700	0.63	-3.4
3,870,177	-		EFB2_03700	0.63	+0.4
3,870,177	-		EFB2_03700	0.63	+0.8
3,870,177	-		EFB2_03700	0.63	+0.6
3,870,177	-		EFB2_03700	0.63	+0.6
3,870,229	+		EFB2_03700	0.71	-2.5
3,870,230	-		EFB2_03700	0.71	-1.0
3,870,232	+		EFB2_03700	0.72	-3.4
3,870,233	-		EFB2_03700	0.72	-3.1
3,870,233	-		EFB2_03700	0.72	-0.6
3,870,257	-		EFB2_03700	0.76	-0.8
3,870,266	-		EFB2_03700	0.77	+2.4
3,870,348	+				-0.5
3,870,369	-				-0.2
3,870,369	-				+0.5
3,870,369	-				-1.5
3,870,371	+				-1.6
3,870,371	+				+0.9
3,870,371	+				-0.3
3,870,371	+				-1.4
3,870,371	+				-1.3
3,870,371	+				-2.8
3,870,371	+				+0.8
3,870,372	-				+2.0
3,870,372	-				+0.2
3,870,372	-				+1.2
3,870,372	-				-2.5
3,870,404	+				+1.1
3,870,405	-				+1.7
3,870,405	-				+1.6
3,870,405	-				-0.5
3,870,408	+				-0.8
3,870,461	+				+0.3
3,870,461	+				+0.9
3,870,461	+				-3.1
3,870,461	+				+1.0
3,870,461	+				-1.4
3,870,461	+				-2.7
3,870,461	+				+0.9
3,870,462	-				+1.9
3,870,462	-				-1.7
3,870,462	-				+2.0
3,870,462	-				-2.8
3,870,462	-				+0.6
3,870,462	-				+0.7
3,870,462	-				-2.2
3,870,462	-				-1.1
3,870,462	-				+1.6
3,870,462	-				-0.4
3,870,462	-				+0.6
3,870,462	-				-1.9
3,870,462	-				-0.3
3,870,462	-				+0.5
3,870,499	+				-0.4
3,870,499	+				+0.3
3,870,500	-				+0.8
3,870,504	+				-0.1
3,870,504	+				-2.3
3,870,504	+				-1.4
3,870,504	+				+1.2
3,870,504	+				+0.7
3,870,504	+				+1.1
3,870,504	+				-1.2
3,870,505	-				+0.9
3,870,505	-				+0.9
3,870,505	-				-1.9
3,870,505	-				+1.1
3,870,538	-				+0.1
3,870,538	-				+0.2
3,870,564	+				+0.4
3,870,564	+				+1.7
3,870,564	+				-1.4
3,870,565	-				+3.1
3,870,565	-				+0.4
3,870,565	-				+0.0
3,870,565	-				+0.7
3,870,565	-				+1.1
3,870,566	+				+1.5
3,870,566	+				-3.5
3,870,566	+				+1.9
3,870,566	+				-3.0
3,870,566	+				-0.0
3,870,566	+				+1.0
3,870,566	+				+2.1
3,870,566	+				+1.3
3,870,566	+				+1.4
3,870,566	+				+0.8
3,870,566	+				+0.4
3,870,566	+				+0.4
3,870,566	+				+0.0
3,870,566	+				-0.3
3,870,566	+				+1.1
3,870,566	+				+0.7
3,870,566	+				-1.3
3,870,566	+				-0.8
3,870,567	-				-1.6
3,870,567	-				+0.9
3,870,567	-				-0.8
3,870,567	-				-1.0
3,870,567	-				-0.4
3,870,567	-				-0.5
3,870,567	-				+1.4
3,870,567	-				+0.7
3,870,567	-				+1.2
3,870,567	-				-0.8
3,870,567	-				+1.2
3,870,567	-				-2.1
3,870,567	-				-2.0
3,870,567	-				+0.1
3,870,604	+				-1.4
3,870,615	-				+0.9
3,870,711	+		EFB2_03701	0.14	+2.4
3,870,712	-		EFB2_03701	0.14	-0.5
3,870,752	+		EFB2_03701	0.18	+1.1
3,870,752	+		EFB2_03701	0.18	-2.3
3,870,753	-		EFB2_03701	0.18	+0.8
3,870,753	-		EFB2_03701	0.18	+0.9
3,870,811	+		EFB2_03701	0.22	-0.6
3,870,829	+		EFB2_03701	0.24	-0.3
3,870,829	+		EFB2_03701	0.24	-1.5
3,870,830	-		EFB2_03701	0.24	+2.0
3,870,830	-		EFB2_03701	0.24	-2.7
3,870,849	+		EFB2_03701	0.25	+0.5
3,870,890	-		EFB2_03701	0.28	+1.1
3,870,942	+		EFB2_03701	0.32	-2.4
3,870,942	+		EFB2_03701	0.32	+0.6
3,870,942	+		EFB2_03701	0.32	-0.2
3,870,943	-		EFB2_03701	0.32	-0.7
3,870,946	+		EFB2_03701	0.33	+0.9
3,870,947	-		EFB2_03701	0.33	-1.7
3,870,970	+		EFB2_03701	0.35	-0.1
3,870,971	-		EFB2_03701	0.35	+1.1
3,870,997	+		EFB2_03701	0.37	-2.3
3,870,997	+		EFB2_03701	0.37	-1.3
3,870,998	-		EFB2_03701	0.37	-0.7
3,870,998	-		EFB2_03701	0.37	+0.4
3,870,998	-		EFB2_03701	0.37	-0.8
3,871,000	+		EFB2_03701	0.37	+1.6
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